Wall clock time and date at job start Tue Mar 31 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.99077 * 2 1 4 4 C 1.54104 * 109.87310 * 238.92246 * 2 1 3 5 5 C 1.54814 * 104.18352 * 238.54351 * 4 2 1 6 6 H 1.09001 * 110.90605 * 97.35549 * 5 4 2 7 7 C 1.50701 * 110.90810 * 220.92059 * 5 4 2 8 8 O 1.20828 * 119.99914 * 0.02562 * 7 5 4 9 9 O 1.34232 * 119.99887 * 179.97438 * 7 5 4 10 10 C 1.45200 * 116.99838 * 180.02562 * 9 7 5 11 11 C 1.50703 * 109.47243 * 180.02562 * 10 9 7 12 12 C 1.38632 * 119.74440 * 90.00031 * 11 10 9 13 13 C 1.37622 * 120.24535 * 180.02562 * 12 11 10 14 14 C 1.40715 * 119.74414 * 359.97053 * 13 12 11 15 15 C 1.41399 * 120.24380 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00017 * 336.16702 * 15 14 13 17 17 C 1.39946 * 119.99963 * 156.16512 * 15 14 13 18 18 N 1.30832 * 120.00122 * 341.48270 * 17 15 14 19 19 Si 1.86797 * 120.00107 * 161.48024 * 17 15 14 20 20 H 1.48497 * 109.47049 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47403 * 120.00072 * 19 17 15 22 22 H 1.48503 * 109.47061 * 240.00307 * 19 17 15 23 23 C 1.40712 * 119.51173 * 0.26184 * 14 13 12 24 24 C 1.37622 * 119.74370 * 359.50755 * 23 14 13 25 25 C 1.54989 * 102.09428 * 339.12208 * 5 4 2 26 26 O 1.43736 * 109.87889 * 121.09001 * 2 1 3 27 27 H 1.09001 * 109.47517 * 181.08186 * 1 2 3 28 28 H 1.09006 * 109.47062 * 301.07950 * 1 2 3 29 29 H 1.09001 * 109.47364 * 61.07672 * 1 2 3 30 30 H 1.09002 * 110.48791 * 119.87188 * 4 2 1 31 31 H 1.08995 * 110.49350 * 357.22288 * 4 2 1 32 32 H 1.09001 * 109.47308 * 60.00349 * 10 9 7 33 33 H 1.09002 * 109.47034 * 300.00300 * 10 9 7 34 34 H 1.08003 * 119.88128 * 359.97438 * 12 11 10 35 35 H 1.08003 * 120.12590 * 180.02562 * 13 12 11 36 36 H 0.96994 * 119.99932 * 179.97438 * 18 17 15 37 37 H 1.08002 * 120.13118 * 179.72521 * 23 14 13 38 38 H 1.08001 * 119.87634 * 180.23420 * 24 23 14 39 39 H 1.09005 * 110.61967 * 155.52256 * 25 5 4 40 40 H 1.08999 * 110.61777 * 278.52158 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 6 2.0539 -0.7481 -1.2413 5 6 2.9194 -1.8914 -0.6578 6 1 2.3540 -2.8221 -0.6107 7 6 4.1826 -2.0725 -1.4596 8 8 4.3979 -1.3656 -2.4156 9 8 5.0689 -3.0185 -1.1111 10 6 6.2633 -3.1358 -1.9283 11 6 7.1337 -4.2420 -1.3900 12 6 6.9666 -5.5371 -1.8558 13 6 7.7554 -6.5553 -1.3709 14 6 8.7347 -6.2776 -0.3994 15 6 9.5506 -7.3158 0.1064 16 1 9.2081 -8.3393 0.0677 17 6 10.8019 -7.0170 0.6573 18 7 11.3774 -5.8726 0.3912 19 14 11.6504 -8.2521 1.7726 20 1 10.7966 -9.4588 1.9149 21 1 12.9573 -8.6367 1.1816 22 1 11.8715 -7.6425 3.1086 23 6 8.8920 -4.9602 0.0695 24 6 8.0952 -3.9570 -0.4330 25 6 3.2379 -1.3643 0.7644 26 8 2.0188 -0.6980 1.1576 27 1 -0.3634 -1.0275 0.0194 28 1 -0.3633 0.5305 0.8802 29 1 -0.3634 0.4970 -0.8995 30 1 2.6618 -0.0858 -1.8575 31 1 1.2245 -1.1547 -1.8200 32 1 6.8140 -2.1954 -1.9041 33 1 5.9796 -3.3643 -2.9557 34 1 6.2140 -5.7479 -2.6012 35 1 7.6238 -7.5634 -1.7354 36 1 12.2445 -5.6654 0.7733 37 1 9.6375 -4.7367 0.8183 38 1 8.2166 -2.9444 -0.0774 39 1 3.4584 -2.1910 1.4398 40 1 4.0685 -0.6590 0.7354 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784147455.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:11 Heat of formation + Delta-G solvation = -127.038032 kcal Electronic energy + Delta-G solvation = -22103.170899 eV Core-core repulsion = 18654.098972 eV Total energy + Delta-G solvation = -3449.071927 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.69668 -39.19807 -37.69289 -36.15187 -33.90840 -32.66971 -32.07191 -30.75607 -29.40056 -27.36489 -26.22178 -24.45417 -23.28817 -21.55868 -21.12073 -20.20155 -20.07914 -17.90560 -17.42311 -16.77234 -16.44628 -15.72269 -15.53592 -15.36656 -15.12253 -14.24829 -13.99850 -13.77936 -13.58341 -13.07464 -12.72299 -12.71478 -12.47242 -12.32418 -12.25654 -12.06604 -11.62855 -11.47458 -11.34392 -11.19580 -11.11753 -11.02718 -10.67332 -10.62228 -10.26092 -10.21435 -9.96215 -9.72085 -9.50416 -9.24224 -7.59695 -7.49499 -6.90809 -4.49091 2.28472 2.37227 2.88731 2.97806 3.01445 3.06524 3.24620 3.69298 3.83542 4.12410 4.45703 4.47533 4.69041 4.80633 4.89050 5.00560 5.17558 5.37860 5.40838 5.50883 5.57267 5.62078 5.65925 5.67325 5.71887 5.75742 5.89695 6.04128 6.21661 6.27935 6.61738 6.75983 6.84486 6.94632 7.15018 7.23197 7.48461 7.70483 7.93111 7.94725 7.97836 8.16106 8.50926 8.75641 8.83691 10.03362 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031337 B = 0.002792 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.302557 B =10025.865472 C =10411.891390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.070 3.930 3 H 0.071 0.929 4 C -0.143 4.143 5 C -0.121 4.121 6 H 0.121 0.879 7 C 0.466 3.534 8 O -0.516 6.516 9 O -0.347 6.347 10 C 0.135 3.865 11 C -0.238 4.238 12 C -0.063 4.063 13 C -0.231 4.231 14 C 0.119 3.881 15 C -0.455 4.455 16 H 0.081 0.919 17 C 0.075 3.925 18 N -0.784 5.784 19 Si 0.910 3.090 20 H -0.259 1.259 21 H -0.273 1.273 22 H -0.270 1.270 23 C -0.171 4.171 24 C -0.074 4.074 25 C 0.064 3.936 26 O -0.369 6.369 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.283 0.717 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.110 0.890 40 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.722 8.127 0.174 15.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.013 3.987 3 H 0.089 0.911 4 C -0.180 4.180 5 C -0.141 4.141 6 H 0.139 0.861 7 C 0.308 3.692 8 O -0.406 6.406 9 O -0.263 6.263 10 C 0.064 3.936 11 C -0.239 4.239 12 C -0.081 4.081 13 C -0.251 4.251 14 C 0.116 3.884 15 C -0.484 4.484 16 H 0.099 0.901 17 C -0.144 4.144 18 N -0.409 5.409 19 Si 0.734 3.266 20 H -0.182 1.182 21 H -0.199 1.199 22 H -0.195 1.195 23 C -0.191 4.191 24 C -0.093 4.093 25 C -0.013 4.013 26 O -0.288 6.288 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.137 0.863 38 H 0.107 0.893 39 H 0.129 0.871 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -13.482 8.443 0.120 15.908 hybrid contribution 0.729 -0.483 0.042 0.875 sum -12.753 7.961 0.162 15.035 Atomic orbital electron populations 1.21940 0.93470 1.02975 1.02423 1.22788 0.95343 0.95994 0.84585 0.91063 1.23069 0.99808 0.96735 0.98398 1.22597 0.92807 1.02260 0.96401 0.86086 1.23153 0.84926 0.77930 0.83158 1.90619 1.76846 1.44952 1.28141 1.86718 1.31409 1.51670 1.56497 1.21761 0.81303 0.98216 0.92363 1.18640 1.03056 0.93261 1.08948 1.20382 0.97268 0.92438 0.98029 1.20949 1.03657 0.97386 1.03060 1.17695 0.89835 0.92841 0.88022 1.19716 0.99963 0.95193 1.33498 0.90083 1.25988 0.97419 0.96062 0.94924 1.69835 1.14479 1.22530 1.34036 0.86235 0.79195 0.81177 0.80033 1.18245 1.19864 1.19536 1.21294 1.01754 0.92966 1.03042 1.20527 0.95465 0.97508 0.95809 1.23455 0.87883 0.97067 0.92859 1.88916 1.39487 1.67453 1.32989 0.91724 0.91831 0.91178 0.88544 0.89532 0.91944 0.92033 0.89329 0.88693 0.90638 0.86265 0.89332 0.87146 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.36 37.16 0.35 -0.78 16 2 C 0.07 0.67 4.06 -26.15 -0.11 0.56 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 4 C -0.14 -1.43 6.06 -25.20 -0.15 -1.58 16 5 C -0.12 -1.41 3.63 -89.76 -0.33 -1.73 16 6 H 0.12 1.24 8.14 -51.93 -0.42 0.82 16 7 C 0.47 7.14 7.28 36.01 0.26 7.40 16 8 O -0.52 -8.95 15.20 -18.75 -0.29 -9.23 16 9 O -0.35 -6.10 10.20 -39.26 -0.40 -6.50 16 10 C 0.14 2.53 5.58 36.01 0.20 2.74 16 11 C -0.24 -5.18 5.54 -104.33 -0.58 -5.75 16 12 C -0.06 -1.39 9.67 -39.66 -0.38 -1.77 16 13 C -0.23 -5.55 9.80 -38.87 -0.38 -5.93 16 14 C 0.12 3.09 5.58 -106.82 -0.60 2.49 16 15 C -0.46 -11.69 9.05 -37.74 -0.34 -12.03 16 16 H 0.08 2.00 7.91 -52.49 -0.42 1.58 16 17 C 0.08 1.82 5.13 -17.34 -0.09 1.74 16 18 N -0.78 -19.60 10.98 55.55 0.61 -18.99 16 19 Si 0.91 17.97 29.60 -169.99 -5.03 12.94 16 20 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 21 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 22 H -0.27 -5.26 7.11 56.52 0.40 -4.85 16 23 C -0.17 -4.34 8.70 -38.87 -0.34 -4.68 16 24 C -0.07 -1.71 9.67 -39.66 -0.38 -2.10 16 25 C 0.06 0.73 7.16 38.21 0.27 1.00 16 26 O -0.37 -4.32 11.19 -35.23 -0.39 -4.72 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.10 1.07 6.86 -51.93 -0.36 0.72 16 31 H 0.09 0.73 7.70 -51.93 -0.40 0.33 16 32 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 33 H 0.06 1.10 8.07 -51.93 -0.42 0.68 16 34 H 0.09 1.73 8.06 -52.48 -0.42 1.31 16 35 H 0.09 2.13 8.06 -52.48 -0.42 1.71 16 36 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 37 H 0.12 3.10 6.16 -52.49 -0.32 2.78 16 38 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 39 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 40 H 0.07 0.77 8.04 -51.93 -0.42 0.35 16 LS Contribution 338.88 15.07 5.11 5.11 Total: -1.00 -28.09 338.88 -8.67 -36.76 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -5.69 Total: 5.07 kcal Atomic # 6 Polarization: -17.83 SS G_CDS: -2.59 Total: -20.42 kcal Atomic # 7 Polarization: -19.60 SS G_CDS: 0.61 Total: -18.99 kcal Atomic # 8 Polarization: -19.38 SS G_CDS: -1.08 Total: -20.46 kcal Atomic # 14 Polarization: 17.97 SS G_CDS: -5.03 Total: 12.94 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -28.09 -8.67 -36.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784147455.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.277 kcal (2) G-P(sol) polarization free energy of solvation -28.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds