Wall clock time and date at job start Tue Mar 31 2020 06:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.99077 * 2 1 4 4 C 1.54104 * 109.87310 * 238.92246 * 2 1 3 5 5 C 1.54814 * 104.18352 * 238.54351 * 4 2 1 6 6 H 1.09001 * 110.90605 * 97.35549 * 5 4 2 7 7 C 1.50701 * 110.90810 * 220.92059 * 5 4 2 8 8 O 1.20828 * 119.99914 * 0.02562 * 7 5 4 9 9 O 1.34232 * 119.99887 * 179.97438 * 7 5 4 10 10 C 1.45200 * 116.99838 * 180.02562 * 9 7 5 11 11 C 1.50703 * 109.47243 * 180.02562 * 10 9 7 12 12 C 1.38632 * 119.74440 * 90.00031 * 11 10 9 13 13 C 1.37622 * 120.24535 * 180.02562 * 12 11 10 14 14 C 1.40715 * 119.74414 * 359.97053 * 13 12 11 15 15 C 1.41399 * 120.24380 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00017 * 336.16702 * 15 14 13 17 17 C 1.39946 * 119.99963 * 156.16512 * 15 14 13 18 18 N 1.30832 * 120.00122 * 341.48270 * 17 15 14 19 19 Si 1.86797 * 120.00107 * 161.48024 * 17 15 14 20 20 H 1.48497 * 109.47049 * 359.97438 * 19 17 15 21 21 H 1.48500 * 109.47403 * 120.00072 * 19 17 15 22 22 H 1.48503 * 109.47061 * 240.00307 * 19 17 15 23 23 C 1.40712 * 119.51173 * 0.26184 * 14 13 12 24 24 C 1.37622 * 119.74370 * 359.50755 * 23 14 13 25 25 C 1.54989 * 102.09428 * 339.12208 * 5 4 2 26 26 O 1.43736 * 109.87889 * 121.09001 * 2 1 3 27 27 H 1.09001 * 109.47517 * 181.08186 * 1 2 3 28 28 H 1.09006 * 109.47062 * 301.07950 * 1 2 3 29 29 H 1.09001 * 109.47364 * 61.07672 * 1 2 3 30 30 H 1.09002 * 110.48791 * 119.87188 * 4 2 1 31 31 H 1.08995 * 110.49350 * 357.22288 * 4 2 1 32 32 H 1.09001 * 109.47308 * 60.00349 * 10 9 7 33 33 H 1.09002 * 109.47034 * 300.00300 * 10 9 7 34 34 H 1.08003 * 119.88128 * 359.97438 * 12 11 10 35 35 H 1.08003 * 120.12590 * 180.02562 * 13 12 11 36 36 H 0.96994 * 119.99932 * 179.97438 * 18 17 15 37 37 H 1.08002 * 120.13118 * 179.72521 * 23 14 13 38 38 H 1.08001 * 119.87634 * 180.23420 * 24 23 14 39 39 H 1.09005 * 110.61967 * 155.52256 * 25 5 4 40 40 H 1.08999 * 110.61777 * 278.52158 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0243 0.0000 4 6 2.0539 -0.7481 -1.2413 5 6 2.9194 -1.8914 -0.6578 6 1 2.3540 -2.8221 -0.6107 7 6 4.1826 -2.0725 -1.4596 8 8 4.3979 -1.3656 -2.4156 9 8 5.0689 -3.0185 -1.1111 10 6 6.2633 -3.1358 -1.9283 11 6 7.1337 -4.2420 -1.3900 12 6 6.9666 -5.5371 -1.8558 13 6 7.7554 -6.5553 -1.3709 14 6 8.7347 -6.2776 -0.3994 15 6 9.5506 -7.3158 0.1064 16 1 9.2081 -8.3393 0.0677 17 6 10.8019 -7.0170 0.6573 18 7 11.3774 -5.8726 0.3912 19 14 11.6504 -8.2521 1.7726 20 1 10.7966 -9.4588 1.9149 21 1 12.9573 -8.6367 1.1816 22 1 11.8715 -7.6425 3.1086 23 6 8.8920 -4.9602 0.0695 24 6 8.0952 -3.9570 -0.4330 25 6 3.2379 -1.3643 0.7644 26 8 2.0188 -0.6980 1.1576 27 1 -0.3634 -1.0275 0.0194 28 1 -0.3633 0.5305 0.8802 29 1 -0.3634 0.4970 -0.8995 30 1 2.6618 -0.0858 -1.8575 31 1 1.2245 -1.1547 -1.8200 32 1 6.8140 -2.1954 -1.9041 33 1 5.9796 -3.3643 -2.9557 34 1 6.2140 -5.7479 -2.6012 35 1 7.6238 -7.5634 -1.7354 36 1 12.2445 -5.6654 0.7733 37 1 9.6375 -4.7367 0.8183 38 1 8.2166 -2.9444 -0.0774 39 1 3.4584 -2.1910 1.4398 40 1 4.0685 -0.6590 0.7354 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784147455.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:11 Heat of formation + Delta-G solvation = -140.521634 kcal Electronic energy + Delta-G solvation = -22103.755591 eV Core-core repulsion = 18654.098972 eV Total energy + Delta-G solvation = -3449.656620 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.86427 -40.24661 -39.42921 -37.55909 -35.70180 -33.58269 -32.95168 -32.40049 -31.23951 -29.02515 -27.02675 -25.92462 -24.59664 -22.97047 -22.40152 -21.86170 -21.25328 -19.28674 -19.04114 -18.01341 -17.64779 -17.17982 -16.67219 -16.41061 -16.36287 -15.76271 -15.53435 -15.34346 -14.65664 -14.37840 -14.11792 -13.93350 -13.87336 -13.44337 -13.41888 -13.25922 -13.08291 -12.97752 -12.80024 -12.46397 -12.38656 -12.18780 -11.91707 -11.84500 -11.70658 -11.59614 -11.42629 -11.30135 -11.04356 -10.78142 -9.45121 -9.35461 -8.71136 -6.40493 0.70782 1.05972 1.10208 1.37926 1.41672 1.53984 1.83237 2.18837 2.66700 2.85636 3.23609 3.63666 3.65527 3.81037 3.93139 4.04955 4.07756 4.09269 4.11276 4.41134 4.46597 4.51966 4.54232 4.58615 4.67901 4.80779 4.90868 4.92558 4.99599 5.09502 5.11015 5.29126 5.31141 5.37908 5.45739 5.63849 5.82315 5.87179 6.04687 6.12952 6.30804 6.63201 6.66246 6.87435 6.95966 8.26093 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031337 B = 0.002792 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 893.302557 B =10025.865472 C =10411.891390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.066 3.934 3 H 0.075 0.925 4 C -0.137 4.137 5 C -0.117 4.117 6 H 0.140 0.860 7 C 0.468 3.532 8 O -0.536 6.536 9 O -0.356 6.356 10 C 0.140 3.860 11 C -0.231 4.231 12 C -0.064 4.064 13 C -0.246 4.246 14 C 0.088 3.912 15 C -0.492 4.492 16 H 0.080 0.920 17 C 0.035 3.965 18 N -0.817 5.817 19 Si 0.984 3.016 20 H -0.257 1.257 21 H -0.265 1.265 22 H -0.264 1.264 23 C -0.195 4.195 24 C -0.079 4.079 25 C 0.064 3.936 26 O -0.382 6.382 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.118 0.882 35 H 0.103 0.897 36 H 0.291 0.709 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.115 0.885 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.244 8.436 0.130 17.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.009 3.991 3 H 0.093 0.907 4 C -0.175 4.175 5 C -0.136 4.136 6 H 0.157 0.843 7 C 0.313 3.687 8 O -0.426 6.426 9 O -0.272 6.272 10 C 0.068 3.932 11 C -0.232 4.232 12 C -0.083 4.083 13 C -0.266 4.266 14 C 0.085 3.915 15 C -0.520 4.520 16 H 0.098 0.902 17 C -0.181 4.181 18 N -0.443 5.443 19 Si 0.804 3.196 20 H -0.180 1.180 21 H -0.190 1.190 22 H -0.188 1.188 23 C -0.214 4.214 24 C -0.098 4.098 25 C -0.013 4.013 26 O -0.302 6.302 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.124 0.876 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.136 0.864 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.133 0.867 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -15.025 8.769 0.067 17.397 hybrid contribution 1.075 -0.438 -0.029 1.161 sum -13.950 8.331 0.038 16.249 Atomic orbital electron populations 1.21948 0.91758 1.03339 1.03436 1.22963 0.96705 0.95873 0.83600 0.90676 1.23080 0.99881 0.95932 0.98578 1.22717 0.91113 1.03795 0.95964 0.84250 1.23788 0.85161 0.76735 0.83055 1.90616 1.77296 1.45467 1.29229 1.86680 1.31341 1.52775 1.56419 1.21569 0.81669 0.97225 0.92717 1.18958 1.02654 0.94139 1.07478 1.20706 0.97279 0.92102 0.98167 1.21167 1.03828 0.98490 1.03068 1.18051 0.90963 0.93397 0.89064 1.19951 1.01199 0.95195 1.35704 0.90227 1.26831 0.97565 0.98013 0.95669 1.69876 1.15204 1.24252 1.34930 0.85131 0.78042 0.78502 0.77909 1.18032 1.18955 1.18810 1.21267 1.02610 0.93696 1.03835 1.20768 0.95228 0.97881 0.95901 1.23455 0.87866 0.97179 0.92790 1.88914 1.39449 1.67700 1.34094 0.91630 0.91733 0.89343 0.89733 0.87618 0.91431 0.90882 0.86386 0.87916 0.89842 0.87829 0.87561 0.86650 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.36 71.98 0.67 -1.15 16 2 C 0.07 1.11 4.06 30.97 0.13 1.23 16 3 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 4 C -0.14 -2.42 6.06 31.59 0.19 -2.23 16 5 C -0.12 -2.45 3.63 -10.24 -0.04 -2.49 16 6 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 7 C 0.47 13.49 7.28 71.24 0.52 14.00 16 8 O -0.54 -17.68 15.20 21.96 0.33 -17.35 16 9 O -0.36 -11.86 10.20 -51.43 -0.52 -12.39 16 10 C 0.14 5.01 5.58 71.24 0.40 5.40 16 11 C -0.23 -9.83 5.54 -19.68 -0.11 -9.94 16 12 C -0.06 -2.78 9.67 22.22 0.21 -2.57 16 13 C -0.25 -11.91 9.80 22.73 0.22 -11.69 16 14 C 0.09 4.69 5.58 -21.29 -0.12 4.57 16 15 C -0.49 -26.04 9.05 23.46 0.21 -25.83 16 16 H 0.08 4.05 7.91 -2.91 -0.02 4.03 16 17 C 0.04 1.74 5.13 85.26 0.44 2.18 16 18 N -0.82 -41.88 10.98 21.83 0.24 -41.64 16 19 Si 0.98 37.14 29.60 68.60 2.03 39.17 16 20 H -0.26 -9.49 7.11 99.48 0.71 -8.79 16 21 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 22 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 23 C -0.19 -10.15 8.70 22.73 0.20 -9.96 16 24 C -0.08 -3.66 9.67 22.22 0.21 -3.44 16 25 C 0.06 1.35 7.16 72.66 0.52 1.87 16 26 O -0.38 -8.26 11.19 -148.98 -1.67 -9.93 16 27 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 29 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 30 H 0.08 1.73 6.86 -2.39 -0.02 1.71 16 31 H 0.11 1.46 7.70 -2.39 -0.02 1.44 16 32 H 0.07 2.34 8.07 -2.39 -0.02 2.32 16 33 H 0.07 2.45 8.07 -2.39 -0.02 2.43 16 34 H 0.12 4.34 8.06 -2.91 -0.02 4.31 16 35 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 36 H 0.29 13.34 8.30 -92.71 -0.77 12.57 16 37 H 0.10 5.63 6.16 -2.91 -0.02 5.61 16 38 H 0.11 4.39 8.06 -2.91 -0.02 4.37 16 39 H 0.12 2.29 8.14 -2.38 -0.02 2.27 16 40 H 0.06 1.36 8.04 -2.39 -0.02 1.34 16 Total: -1.00 -60.78 338.88 5.11 -55.67 By element: Atomic # 1 Polarization: 25.45 SS G_CDS: 1.03 Total: 26.49 kcal Atomic # 6 Polarization: -43.68 SS G_CDS: 3.66 Total: -40.02 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.24 Total: -41.64 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: -1.86 Total: -39.67 kcal Atomic # 14 Polarization: 37.14 SS G_CDS: 2.03 Total: 39.17 kcal Total: -60.78 5.11 -55.67 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784147455.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.849 kcal (2) G-P(sol) polarization free energy of solvation -60.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds