Wall clock time and date at job start Tue Mar 31 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.33485 * 2 1 4 4 C 1.54481 * 110.37219 * 122.25203 * 2 1 3 5 5 C 1.54512 * 104.06633 * 142.91905 * 4 2 1 6 6 H 1.08999 * 110.51067 * 241.22562 * 5 4 2 7 7 C 1.50697 * 110.50965 * 118.64614 * 5 4 2 8 8 O 1.20822 * 120.00133 * 359.97438 * 7 5 4 9 9 O 1.34234 * 119.99746 * 180.02562 * 7 5 4 10 10 C 1.45193 * 116.99797 * 179.97438 * 9 7 5 11 11 C 1.50698 * 109.47180 * 179.97438 * 10 9 7 12 12 C 1.38636 * 119.75252 * 90.00131 * 11 10 9 13 13 C 1.37611 * 120.25448 * 179.97438 * 12 11 10 14 14 C 1.40719 * 119.74369 * 359.97438 * 13 12 11 15 15 C 1.41392 * 120.24595 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99580 * 25.14957 * 15 14 13 17 17 C 1.39945 * 120.00395 * 205.13922 * 15 14 13 18 18 N 1.30823 * 119.99974 * 17.43692 * 17 15 14 19 19 Si 1.86803 * 120.00106 * 197.43490 * 17 15 14 20 20 H 1.48506 * 109.46768 * 265.18076 * 19 17 15 21 21 H 1.48503 * 109.47148 * 145.18591 * 19 17 15 22 22 H 1.48494 * 109.47408 * 25.18381 * 19 17 15 23 23 C 1.40715 * 119.51201 * 0.27880 * 14 13 12 24 24 C 1.37619 * 119.74233 * 359.44299 * 23 14 13 25 25 C 1.54488 * 104.05933 * 0.02562 * 5 4 2 26 26 O 1.44424 * 104.80497 * 336.02012 * 25 5 4 27 27 H 1.09001 * 109.47226 * 297.74946 * 1 2 3 28 28 H 1.09007 * 109.46573 * 57.74645 * 1 2 3 29 29 H 1.08995 * 109.47286 * 177.74478 * 1 2 3 30 30 H 1.08998 * 110.51018 * 24.27620 * 4 2 1 31 31 H 1.08994 * 110.63170 * 261.62636 * 4 2 1 32 32 H 1.09006 * 109.47354 * 60.00124 * 10 9 7 33 33 H 1.08997 * 109.47417 * 299.99924 * 10 9 7 34 34 H 1.08010 * 119.87036 * 359.97438 * 12 11 10 35 35 H 1.08002 * 120.13388 * 179.97438 * 13 12 11 36 36 H 0.96991 * 120.00555 * 179.97438 * 18 17 15 37 37 H 1.07994 * 120.13332 * 179.72615 * 23 14 13 38 38 H 1.08003 * 119.88191 * 180.27755 * 24 23 14 39 39 H 1.08999 * 110.37188 * 94.85149 * 25 5 4 40 40 H 1.09000 * 110.36835 * 217.19102 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0678 -0.7728 1.2247 5 6 3.3194 -1.5028 0.6882 6 1 3.1996 -2.5825 0.7779 7 6 4.5527 -1.0466 1.4242 8 8 4.4626 -0.2172 2.2981 9 8 5.7516 -1.5612 1.1083 10 6 6.8959 -1.0750 1.8581 11 6 8.1454 -1.7608 1.3688 12 6 8.8771 -1.2005 0.3331 13 6 10.0199 -1.8178 -0.1215 14 6 10.4453 -3.0219 0.4695 15 6 11.6176 -3.6654 0.0104 16 1 12.3942 -3.0917 -0.4737 17 6 11.7719 -5.0455 0.1835 18 7 10.7303 -5.7923 0.4459 19 14 13.4650 -5.8214 0.0396 20 1 13.6620 -6.3270 -1.3428 21 1 13.5759 -6.9490 0.9996 22 1 14.5031 -4.8052 0.3477 23 6 9.6919 -3.5842 1.5165 24 6 8.5554 -2.9465 1.9588 25 6 3.3901 -1.0841 -0.7972 26 8 2.0355 -0.7225 -1.1436 27 1 -0.3634 0.4785 0.9095 28 1 -0.3633 0.5485 -0.8692 29 1 -0.3633 -1.0268 -0.0404 30 1 1.3283 -1.4917 1.5775 31 1 2.3407 -0.0839 2.0240 32 1 6.7546 -1.2906 2.9172 33 1 6.9926 0.0014 1.7163 34 1 8.5488 -0.2760 -0.1188 35 1 10.5882 -1.3798 -0.9288 36 1 10.8370 -6.7488 0.5655 37 1 10.0067 -4.5103 1.9743 38 1 7.9779 -3.3738 2.7652 39 1 4.0543 -0.2284 -0.9190 40 1 3.7288 -1.9188 -1.4109 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000784147456.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:14 Heat of formation + Delta-G solvation = -126.574285 kcal Electronic energy + Delta-G solvation = -22156.784387 eV Core-core repulsion = 18707.732570 eV Total energy + Delta-G solvation = -3449.051817 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.71102 -39.12011 -37.68754 -36.14154 -33.90222 -32.59399 -32.07941 -30.75123 -29.40381 -27.35914 -26.24317 -24.38905 -23.21607 -21.64228 -21.12123 -20.13260 -20.04745 -17.89741 -17.42110 -16.74147 -16.36240 -15.81593 -15.55181 -15.35860 -15.11537 -14.35587 -13.94693 -13.75482 -13.41205 -13.10580 -12.74211 -12.50870 -12.42542 -12.26129 -12.24858 -12.05874 -11.78502 -11.52590 -11.22286 -11.17955 -11.03666 -10.98777 -10.85025 -10.48395 -10.28326 -10.19520 -10.01076 -9.73310 -9.50361 -9.24912 -7.59594 -7.48091 -6.89026 -4.49307 2.30616 2.38735 2.90042 2.97743 3.00983 3.05993 3.27295 3.71624 3.83816 4.18874 4.45815 4.48242 4.72475 4.86098 4.93905 5.03450 5.20623 5.39215 5.42722 5.56833 5.57359 5.61473 5.66396 5.67007 5.75366 5.79013 5.88104 6.03175 6.21301 6.27764 6.58158 6.77719 6.84486 6.94919 7.14921 7.23264 7.48626 7.70318 7.92883 7.95970 7.97948 8.16313 8.51011 8.75769 8.83689 10.04772 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033840 B = 0.002788 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.228300 B =10041.557890 C =10246.202265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.068 3.932 3 H 0.071 0.929 4 C -0.146 4.146 5 C -0.121 4.121 6 H 0.120 0.880 7 C 0.464 3.536 8 O -0.517 6.517 9 O -0.346 6.346 10 C 0.135 3.865 11 C -0.237 4.237 12 C -0.063 4.063 13 C -0.230 4.230 14 C 0.119 3.881 15 C -0.456 4.456 16 H 0.080 0.920 17 C 0.075 3.925 18 N -0.785 5.785 19 Si 0.910 3.090 20 H -0.269 1.269 21 H -0.274 1.274 22 H -0.259 1.259 23 C -0.170 4.170 24 C -0.075 4.075 25 C 0.063 3.937 26 O -0.368 6.368 27 H 0.071 0.929 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.101 0.899 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.283 0.717 37 H 0.120 0.880 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.529 5.562 0.448 14.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.010 3.990 3 H 0.089 0.911 4 C -0.183 4.183 5 C -0.141 4.141 6 H 0.138 0.862 7 C 0.307 3.693 8 O -0.407 6.407 9 O -0.262 6.262 10 C 0.064 3.936 11 C -0.239 4.239 12 C -0.082 4.082 13 C -0.249 4.249 14 C 0.116 3.884 15 C -0.484 4.484 16 H 0.099 0.901 17 C -0.144 4.144 18 N -0.409 5.409 19 Si 0.734 3.266 20 H -0.194 1.194 21 H -0.199 1.199 22 H -0.183 1.183 23 C -0.189 4.189 24 C -0.094 4.094 25 C -0.015 4.015 26 O -0.287 6.287 27 H 0.090 0.910 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.120 0.880 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.107 0.893 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.138 0.862 38 H 0.107 0.893 39 H 0.084 0.916 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -13.683 5.506 0.551 14.760 hybrid contribution 0.917 -0.438 0.227 1.041 sum -12.767 5.068 0.778 13.758 Atomic orbital electron populations 1.21795 0.92905 1.03045 1.02510 1.23036 0.95508 0.95710 0.84710 0.91104 1.23110 0.95186 1.00472 0.99549 1.22428 0.91061 1.03833 0.96756 0.86179 1.23265 0.85694 0.78977 0.81399 1.90598 1.87007 1.31850 1.31212 1.86737 1.15648 1.63165 1.60626 1.21768 0.80876 0.97147 0.93855 1.18667 0.97566 1.01207 1.06415 1.20387 0.95257 0.97573 0.94955 1.20970 0.99480 1.00689 1.03775 1.17689 0.91479 0.90330 0.88914 1.19680 1.02854 0.92505 1.33393 0.90147 1.25976 0.98418 0.97655 0.92381 1.69820 1.30734 1.07040 1.33353 0.86271 0.82244 0.79137 0.78977 1.19430 1.19911 1.18310 1.21291 0.97157 1.01482 0.99002 1.20538 0.96745 0.93785 0.98329 1.23287 0.84806 1.01144 0.92220 1.89152 1.26749 1.74563 1.38255 0.91012 0.91792 0.91629 0.89637 0.88037 0.91986 0.92057 0.89320 0.88679 0.90615 0.86240 0.89346 0.91565 0.87269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.52 37.16 0.35 -0.77 16 2 C 0.07 0.69 3.92 -25.96 -0.10 0.58 16 3 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.15 -1.51 6.21 -25.16 -0.16 -1.67 16 5 C -0.12 -1.46 3.63 -90.20 -0.33 -1.78 16 6 H 0.12 1.28 8.14 -51.93 -0.42 0.85 16 7 C 0.46 7.25 7.13 36.00 0.26 7.50 16 8 O -0.52 -9.00 15.03 -18.75 -0.28 -9.28 16 9 O -0.35 -6.22 10.20 -39.27 -0.40 -6.63 16 10 C 0.14 2.54 5.58 36.00 0.20 2.74 16 11 C -0.24 -5.17 5.54 -104.33 -0.58 -5.74 16 12 C -0.06 -1.40 9.67 -39.66 -0.38 -1.78 16 13 C -0.23 -5.51 9.80 -38.87 -0.38 -5.89 16 14 C 0.12 3.08 5.57 -106.82 -0.60 2.49 16 15 C -0.46 -11.70 9.05 -37.74 -0.34 -12.05 16 16 H 0.08 1.97 7.90 -52.48 -0.41 1.56 16 17 C 0.07 1.81 5.15 -17.34 -0.09 1.72 16 18 N -0.78 -19.67 10.96 55.55 0.61 -19.06 16 19 Si 0.91 17.98 29.59 -169.99 -5.03 12.95 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 21 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 22 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 23 C -0.17 -4.32 8.69 -38.87 -0.34 -4.65 16 24 C -0.08 -1.74 9.67 -39.66 -0.38 -2.12 16 25 C 0.06 0.74 7.17 37.94 0.27 1.01 16 26 O -0.37 -4.47 11.35 -35.23 -0.40 -4.87 16 27 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.48 8.14 -51.92 -0.42 0.05 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.08 0.74 7.87 -51.93 -0.41 0.33 16 31 H 0.10 1.17 6.50 -51.93 -0.34 0.83 16 32 H 0.06 1.12 8.07 -51.93 -0.42 0.70 16 33 H 0.06 1.09 8.07 -51.93 -0.42 0.67 16 34 H 0.09 1.73 8.06 -52.48 -0.42 1.30 16 35 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 36 H 0.28 6.41 8.30 -40.82 -0.34 6.07 16 37 H 0.12 3.11 6.17 -52.49 -0.32 2.79 16 38 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 39 H 0.07 0.80 7.86 -51.93 -0.41 0.39 16 40 H 0.11 1.18 8.14 -51.93 -0.42 0.76 16 LS Contribution 338.54 15.07 5.10 5.10 Total: -1.00 -28.15 338.54 -8.67 -36.81 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.67 Total: 5.39 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: -2.59 Total: -20.41 kcal Atomic # 7 Polarization: -19.67 SS G_CDS: 0.61 Total: -19.06 kcal Atomic # 8 Polarization: -19.69 SS G_CDS: -1.08 Total: -20.78 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.15 -8.67 -36.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784147456.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.760 kcal (2) G-P(sol) polarization free energy of solvation -28.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds