Wall clock time and date at job start Tue Mar 31 2020 06:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 110.33485 * 2 1 4 4 C 1.54481 * 110.37219 * 122.25203 * 2 1 3 5 5 C 1.54512 * 104.06633 * 142.91905 * 4 2 1 6 6 H 1.08999 * 110.51067 * 241.22562 * 5 4 2 7 7 C 1.50697 * 110.50965 * 118.64614 * 5 4 2 8 8 O 1.20822 * 120.00133 * 359.97438 * 7 5 4 9 9 O 1.34234 * 119.99746 * 180.02562 * 7 5 4 10 10 C 1.45193 * 116.99797 * 179.97438 * 9 7 5 11 11 C 1.50698 * 109.47180 * 179.97438 * 10 9 7 12 12 C 1.38636 * 119.75252 * 90.00131 * 11 10 9 13 13 C 1.37611 * 120.25448 * 179.97438 * 12 11 10 14 14 C 1.40719 * 119.74369 * 359.97438 * 13 12 11 15 15 C 1.41392 * 120.24595 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99580 * 25.14957 * 15 14 13 17 17 C 1.39945 * 120.00395 * 205.13922 * 15 14 13 18 18 N 1.30823 * 119.99974 * 17.43692 * 17 15 14 19 19 Si 1.86803 * 120.00106 * 197.43490 * 17 15 14 20 20 H 1.48506 * 109.46768 * 265.18076 * 19 17 15 21 21 H 1.48503 * 109.47148 * 145.18591 * 19 17 15 22 22 H 1.48494 * 109.47408 * 25.18381 * 19 17 15 23 23 C 1.40715 * 119.51201 * 0.27880 * 14 13 12 24 24 C 1.37619 * 119.74233 * 359.44299 * 23 14 13 25 25 C 1.54488 * 104.05933 * 0.02562 * 5 4 2 26 26 O 1.44424 * 104.80497 * 336.02012 * 25 5 4 27 27 H 1.09001 * 109.47226 * 297.74946 * 1 2 3 28 28 H 1.09007 * 109.46573 * 57.74645 * 1 2 3 29 29 H 1.08995 * 109.47286 * 177.74478 * 1 2 3 30 30 H 1.08998 * 110.51018 * 24.27620 * 4 2 1 31 31 H 1.08994 * 110.63170 * 261.62636 * 4 2 1 32 32 H 1.09006 * 109.47354 * 60.00124 * 10 9 7 33 33 H 1.08997 * 109.47417 * 299.99924 * 10 9 7 34 34 H 1.08010 * 119.87036 * 359.97438 * 12 11 10 35 35 H 1.08002 * 120.13388 * 179.97438 * 13 12 11 36 36 H 0.96991 * 120.00555 * 179.97438 * 18 17 15 37 37 H 1.07994 * 120.13332 * 179.72615 * 23 14 13 38 38 H 1.08003 * 119.88191 * 180.27755 * 24 23 14 39 39 H 1.08999 * 110.37188 * 94.85149 * 25 5 4 40 40 H 1.09000 * 110.36835 * 217.19102 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9088 1.0221 0.0000 4 6 2.0678 -0.7728 1.2247 5 6 3.3194 -1.5028 0.6882 6 1 3.1996 -2.5825 0.7779 7 6 4.5527 -1.0466 1.4242 8 8 4.4626 -0.2172 2.2981 9 8 5.7516 -1.5612 1.1083 10 6 6.8959 -1.0750 1.8581 11 6 8.1454 -1.7608 1.3688 12 6 8.8771 -1.2005 0.3331 13 6 10.0199 -1.8178 -0.1215 14 6 10.4453 -3.0219 0.4695 15 6 11.6176 -3.6654 0.0104 16 1 12.3942 -3.0917 -0.4737 17 6 11.7719 -5.0455 0.1835 18 7 10.7303 -5.7923 0.4459 19 14 13.4650 -5.8214 0.0396 20 1 13.6620 -6.3270 -1.3428 21 1 13.5759 -6.9490 0.9996 22 1 14.5031 -4.8052 0.3477 23 6 9.6919 -3.5842 1.5165 24 6 8.5554 -2.9465 1.9588 25 6 3.3901 -1.0841 -0.7972 26 8 2.0355 -0.7225 -1.1436 27 1 -0.3634 0.4785 0.9095 28 1 -0.3633 0.5485 -0.8692 29 1 -0.3633 -1.0268 -0.0404 30 1 1.3283 -1.4917 1.5775 31 1 2.3407 -0.0839 2.0240 32 1 6.7546 -1.2906 2.9172 33 1 6.9926 0.0014 1.7163 34 1 8.5488 -0.2760 -0.1188 35 1 10.5882 -1.3798 -0.9288 36 1 10.8370 -6.7488 0.5655 37 1 10.0067 -4.5103 1.9743 38 1 7.9779 -3.3738 2.7652 39 1 4.0543 -0.2284 -0.9190 40 1 3.7288 -1.9188 -1.4109 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784147456.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:13 Heat of formation + Delta-G solvation = -140.148234 kcal Electronic energy + Delta-G solvation = -22157.372998 eV Core-core repulsion = 18707.732570 eV Total energy + Delta-G solvation = -3449.640428 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.89966 -40.20443 -39.42000 -37.56018 -35.69744 -33.55224 -32.95922 -32.40908 -31.24366 -29.02166 -27.08279 -25.90071 -24.51758 -22.96549 -22.50944 -21.86534 -21.18394 -19.28219 -19.05827 -18.00228 -17.61679 -17.20285 -16.68607 -16.43998 -16.38311 -15.82566 -15.57763 -15.37957 -14.55511 -14.30418 -14.09295 -13.93196 -13.84275 -13.55746 -13.43699 -13.18632 -12.99706 -12.85008 -12.71295 -12.63869 -12.44280 -12.11984 -11.95739 -11.85816 -11.72856 -11.59546 -11.40858 -11.30036 -11.04680 -10.87948 -9.45061 -9.34177 -8.69493 -6.40829 0.71185 1.06140 1.10032 1.37874 1.41888 1.53486 1.84425 2.19068 2.68292 2.86891 3.27530 3.61868 3.63891 3.79701 3.91760 4.05819 4.08075 4.12263 4.14677 4.39367 4.46118 4.51096 4.53460 4.59066 4.68239 4.81631 4.88749 4.92639 4.99594 5.06998 5.11038 5.28005 5.29023 5.37936 5.46256 5.63979 5.75257 5.86933 6.04550 6.12726 6.30939 6.63252 6.66110 6.87549 6.95894 8.27227 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033840 B = 0.002788 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.228300 B =10041.557890 C =10246.202265 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.062 3.938 3 H 0.068 0.932 4 C -0.140 4.140 5 C -0.118 4.118 6 H 0.138 0.862 7 C 0.466 3.534 8 O -0.535 6.535 9 O -0.358 6.358 10 C 0.140 3.860 11 C -0.231 4.231 12 C -0.065 4.065 13 C -0.245 4.245 14 C 0.088 3.912 15 C -0.493 4.493 16 H 0.080 0.920 17 C 0.035 3.965 18 N -0.818 5.818 19 Si 0.984 3.016 20 H -0.262 1.262 21 H -0.265 1.265 22 H -0.258 1.258 23 C -0.193 4.193 24 C -0.080 4.080 25 C 0.062 3.938 26 O -0.380 6.380 27 H 0.088 0.912 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.106 0.894 31 H 0.091 0.909 32 H 0.069 0.931 33 H 0.074 0.926 34 H 0.118 0.882 35 H 0.103 0.897 36 H 0.291 0.709 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.059 0.941 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.764 5.805 0.459 15.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.005 3.995 3 H 0.086 0.914 4 C -0.178 4.178 5 C -0.137 4.137 6 H 0.156 0.844 7 C 0.310 3.690 8 O -0.425 6.425 9 O -0.274 6.274 10 C 0.068 3.932 11 C -0.232 4.232 12 C -0.083 4.083 13 C -0.264 4.264 14 C 0.085 3.915 15 C -0.521 4.521 16 H 0.098 0.902 17 C -0.181 4.181 18 N -0.443 5.443 19 Si 0.804 3.196 20 H -0.186 1.186 21 H -0.190 1.190 22 H -0.182 1.182 23 C -0.213 4.213 24 C -0.099 4.099 25 C -0.015 4.015 26 O -0.299 6.299 27 H 0.107 0.893 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.125 0.875 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.136 0.864 35 H 0.121 0.879 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.077 0.923 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -14.944 5.765 0.561 16.027 hybrid contribution 1.133 -0.397 0.250 1.226 sum -13.811 5.368 0.812 14.840 Atomic orbital electron populations 1.21809 0.91006 1.03542 1.03536 1.23209 0.97036 0.95317 0.83925 0.91373 1.23125 0.94805 1.00602 0.99239 1.22567 0.89655 1.05005 0.96482 0.84421 1.23891 0.85600 0.78316 0.81178 1.90595 1.87099 1.32647 1.32161 1.86695 1.16322 1.63665 1.60720 1.21603 0.80169 0.97361 0.94115 1.18984 0.98553 1.00324 1.05319 1.20708 0.94396 0.98392 0.94800 1.21183 1.00428 1.00555 1.04251 1.18047 0.92276 0.91512 0.89660 1.19930 1.03356 0.93688 1.35175 0.90213 1.26822 1.02251 0.97586 0.91463 1.69865 1.32769 1.07679 1.34024 0.85165 0.76990 0.78136 0.79290 1.18625 1.18966 1.18175 1.21267 0.98552 1.01675 0.99797 1.20779 0.96132 0.94212 0.98739 1.23297 0.84839 1.01220 0.92137 1.89152 1.26713 1.74834 1.39222 0.89287 0.91593 0.91309 0.87521 0.89073 0.91239 0.90803 0.86421 0.87917 0.89859 0.87788 0.87555 0.92257 0.86462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.52 71.98 0.69 -1.16 16 2 C 0.06 1.13 3.92 31.10 0.12 1.25 16 3 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 4 C -0.14 -2.59 6.21 31.61 0.20 -2.39 16 5 C -0.12 -2.58 3.63 -10.52 -0.04 -2.62 16 6 H 0.14 2.56 8.14 -2.39 -0.02 2.54 16 7 C 0.47 13.73 7.13 71.23 0.51 14.24 16 8 O -0.53 -17.72 15.03 21.97 0.33 -17.39 16 9 O -0.36 -12.25 10.20 -51.46 -0.53 -12.78 16 10 C 0.14 4.98 5.58 71.24 0.40 5.38 16 11 C -0.23 -9.81 5.54 -19.67 -0.11 -9.92 16 12 C -0.06 -2.80 9.67 22.22 0.21 -2.59 16 13 C -0.24 -11.85 9.80 22.73 0.22 -11.63 16 14 C 0.09 4.68 5.57 -21.29 -0.12 4.56 16 15 C -0.49 -26.09 9.05 23.46 0.21 -25.88 16 16 H 0.08 4.05 7.90 -2.91 -0.02 4.02 16 17 C 0.03 1.71 5.15 85.26 0.44 2.15 16 18 N -0.82 -41.97 10.96 21.83 0.24 -41.73 16 19 Si 0.98 37.12 29.59 68.60 2.03 39.15 16 20 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 21 H -0.27 -9.52 7.11 99.48 0.71 -8.82 16 22 H -0.26 -9.57 7.11 99.48 0.71 -8.86 16 23 C -0.19 -10.10 8.69 22.73 0.20 -9.90 16 24 C -0.08 -3.70 9.67 22.22 0.21 -3.48 16 25 C 0.06 1.36 7.17 72.49 0.52 1.88 16 26 O -0.38 -8.54 11.35 -148.98 -1.69 -10.23 16 27 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.11 1.52 7.87 -2.39 -0.02 1.50 16 31 H 0.09 1.92 6.50 -2.39 -0.02 1.90 16 32 H 0.07 2.37 8.07 -2.38 -0.02 2.36 16 33 H 0.07 2.45 8.07 -2.39 -0.02 2.43 16 34 H 0.12 4.33 8.06 -2.91 -0.02 4.31 16 35 H 0.10 4.66 8.06 -2.91 -0.02 4.64 16 36 H 0.29 13.38 8.30 -92.71 -0.77 12.61 16 37 H 0.10 5.65 6.17 -2.91 -0.02 5.63 16 38 H 0.11 4.40 8.06 -2.91 -0.02 4.37 16 39 H 0.06 1.36 7.86 -2.39 -0.02 1.35 16 40 H 0.12 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -60.88 338.54 5.08 -55.80 By element: Atomic # 1 Polarization: 26.24 SS G_CDS: 1.03 Total: 27.27 kcal Atomic # 6 Polarization: -43.76 SS G_CDS: 3.66 Total: -40.09 kcal Atomic # 7 Polarization: -41.97 SS G_CDS: 0.24 Total: -41.73 kcal Atomic # 8 Polarization: -38.52 SS G_CDS: -1.89 Total: -40.40 kcal Atomic # 14 Polarization: 37.12 SS G_CDS: 2.03 Total: 39.15 kcal Total: -60.88 5.08 -55.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784147456.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.346 kcal (2) G-P(sol) polarization free energy of solvation -60.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds