Wall clock time and date at job start Tue Mar 31 2020 06:20:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09001 * 110.27292 * 2 1 4 4 C 1.54945 * 110.31256 * 122.08293 * 2 1 3 5 5 C 1.55304 * 100.94417 * 155.45998 * 4 2 1 6 6 H 1.09003 * 110.84871 * 84.05907 * 5 4 2 7 7 C 1.50700 * 110.85081 * 207.68009 * 5 4 2 8 8 O 1.20826 * 119.99936 * 354.28158 * 7 5 4 9 9 O 1.34232 * 120.00039 * 174.29131 * 7 5 4 10 10 C 1.45192 * 116.99905 * 180.02562 * 9 7 5 11 11 C 1.50705 * 109.47296 * 179.97438 * 10 9 7 12 12 C 1.38630 * 119.74648 * 269.72487 * 11 10 9 13 13 C 1.37626 * 120.24321 * 179.71596 * 12 11 10 14 14 C 1.40707 * 119.74812 * 0.57451 * 13 12 11 15 15 C 1.41393 * 120.24730 * 179.67982 * 14 13 12 16 16 H 1.07995 * 119.99839 * 24.39417 * 15 14 13 17 17 C 1.39950 * 119.99975 * 204.39795 * 15 14 13 18 18 N 1.30823 * 120.00055 * 17.85621 * 17 15 14 19 19 Si 1.86800 * 119.99711 * 197.86080 * 17 15 14 20 20 H 1.48494 * 109.47189 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47322 * 119.99778 * 19 17 15 22 22 H 1.48498 * 109.47081 * 239.99764 * 19 17 15 23 23 C 1.40720 * 119.50993 * 359.69832 * 14 13 12 24 24 C 1.37620 * 119.74506 * 0.02562 * 23 14 13 25 25 C 1.54384 * 102.25488 * 325.87103 * 5 4 2 26 26 O 1.43240 * 107.58604 * 21.35373 * 25 5 4 27 27 H 1.08996 * 109.47131 * 297.91131 * 1 2 3 28 28 H 1.08995 * 109.47121 * 57.91843 * 1 2 3 29 29 H 1.09004 * 109.46857 * 177.91584 * 1 2 3 30 30 H 1.08999 * 111.12360 * 37.54275 * 4 2 1 31 31 H 1.08996 * 111.16654 * 273.39829 * 4 2 1 32 32 H 1.09001 * 109.47248 * 299.99454 * 10 9 7 33 33 H 1.09001 * 109.47912 * 59.99314 * 10 9 7 34 34 H 1.08002 * 119.88065 * 359.97438 * 12 11 10 35 35 H 1.08007 * 120.12478 * 180.28061 * 13 12 11 36 36 H 0.97003 * 119.99876 * 179.97438 * 18 17 15 37 37 H 1.07998 * 120.13017 * 180.02562 * 23 14 13 38 38 H 1.07996 * 119.87501 * 180.02562 * 24 23 14 39 39 H 1.08998 * 109.83142 * 140.86180 * 25 5 4 40 40 H 1.08997 * 109.83053 * 261.84160 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9076 1.0225 0.0000 4 6 2.0678 -0.7718 1.2312 5 6 3.4710 -1.1995 0.7211 6 1 4.1973 -0.4000 0.8675 7 6 3.9239 -2.4679 1.3973 8 8 3.2626 -2.9470 2.2878 9 8 5.0620 -3.0652 1.0104 10 6 5.4362 -4.2837 1.7056 11 6 6.7308 -4.8077 1.1395 12 6 6.7065 -5.7000 0.0788 13 6 7.8828 -6.1805 -0.4499 14 6 9.1128 -5.7722 0.0980 15 6 10.3274 -6.2645 -0.4326 16 1 10.3680 -6.6153 -1.4531 17 6 11.4771 -6.2972 0.3648 18 7 11.3731 -6.2134 1.6662 19 14 13.1600 -6.4602 -0.4291 20 1 13.0062 -6.5369 -1.9041 21 1 13.9895 -5.2795 -0.0782 22 1 13.8224 -7.6945 0.0638 23 6 9.1251 -4.8704 1.1783 24 6 7.9368 -4.3984 1.6873 25 6 3.2140 -1.4399 -0.7821 26 8 2.0306 -0.7165 -1.1399 27 1 -0.3633 0.4810 0.9081 28 1 -0.3633 0.5458 -0.8707 29 1 -0.3633 -1.0270 -0.0374 30 1 1.4481 -1.6411 1.4513 31 1 2.1479 -0.1193 2.1005 32 1 5.5629 -4.0720 2.7673 33 1 4.6539 -5.0315 1.5751 34 1 5.7612 -6.0161 -0.3369 35 1 7.8618 -6.8722 -1.2793 36 1 12.1699 -6.2364 2.2189 37 1 10.0634 -4.5500 1.6063 38 1 7.9438 -3.7060 2.5160 39 1 4.0602 -1.0759 -1.3647 40 1 3.0668 -2.5040 -0.9665 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000784147462.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:19 Heat of formation + Delta-G solvation = -141.011526 kcal Electronic energy + Delta-G solvation = -22103.389545 eV Core-core repulsion = 18653.711683 eV Total energy + Delta-G solvation = -3449.677863 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.86169 -40.23159 -39.43312 -37.56039 -35.70373 -33.60725 -32.97714 -32.42172 -31.24463 -29.03139 -27.13916 -25.92223 -24.53405 -22.96943 -22.22173 -21.89001 -21.40292 -19.28606 -18.75087 -18.21331 -17.77303 -17.25857 -16.97957 -16.46090 -15.94679 -15.66780 -15.53756 -15.24746 -14.75785 -14.43407 -14.16519 -13.93810 -13.85384 -13.49167 -13.40337 -13.24699 -13.08373 -12.89712 -12.80280 -12.44033 -12.37127 -12.19638 -12.13689 -11.88625 -11.71756 -11.64659 -11.44361 -11.30425 -11.05165 -10.54692 -9.45450 -9.35478 -8.70695 -6.40887 0.70366 1.05808 1.09705 1.37997 1.41532 1.53936 1.83480 2.18887 2.66342 2.77807 3.14734 3.59463 3.72916 3.77967 3.91618 4.02770 4.06302 4.08772 4.18605 4.40625 4.46136 4.49903 4.53783 4.62998 4.69283 4.77329 4.86484 4.93767 4.99217 5.10826 5.14291 5.28747 5.30655 5.37601 5.44638 5.63580 5.86639 5.96225 6.04424 6.12458 6.30532 6.62920 6.65307 6.87277 6.95578 8.26392 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.036060 B = 0.002732 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 776.287773 B =10246.795539 C =10501.617273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.072 3.928 3 H 0.096 0.904 4 C -0.131 4.131 5 C -0.117 4.117 6 H 0.148 0.852 7 C 0.468 3.532 8 O -0.536 6.536 9 O -0.356 6.356 10 C 0.141 3.859 11 C -0.231 4.231 12 C -0.065 4.065 13 C -0.245 4.245 14 C 0.088 3.912 15 C -0.492 4.492 16 H 0.079 0.921 17 C 0.035 3.965 18 N -0.818 5.818 19 Si 0.985 3.015 20 H -0.257 1.257 21 H -0.263 1.263 22 H -0.265 1.265 23 C -0.194 4.194 24 C -0.079 4.079 25 C 0.068 3.932 26 O -0.395 6.395 27 H 0.091 0.909 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.077 0.923 31 H 0.111 0.889 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.117 0.883 35 H 0.102 0.898 36 H 0.291 0.709 37 H 0.105 0.895 38 H 0.107 0.893 39 H 0.096 0.904 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.191 11.785 -0.989 17.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.015 3.985 3 H 0.113 0.887 4 C -0.169 4.169 5 C -0.136 4.136 6 H 0.165 0.835 7 C 0.312 3.688 8 O -0.426 6.426 9 O -0.273 6.273 10 C 0.068 3.932 11 C -0.232 4.232 12 C -0.083 4.083 13 C -0.265 4.265 14 C 0.085 3.915 15 C -0.521 4.521 16 H 0.097 0.903 17 C -0.181 4.181 18 N -0.443 5.443 19 Si 0.805 3.195 20 H -0.181 1.181 21 H -0.188 1.188 22 H -0.190 1.190 23 C -0.213 4.213 24 C -0.098 4.098 25 C -0.009 4.009 26 O -0.315 6.315 27 H 0.110 0.890 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.095 0.905 31 H 0.130 0.870 32 H 0.087 0.913 33 H 0.089 0.911 34 H 0.135 0.865 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.114 0.886 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.325 11.585 -0.697 17.671 hybrid contribution 1.041 -0.629 0.263 1.244 sum -12.284 10.956 -0.434 16.466 Atomic orbital electron populations 1.21910 0.92396 1.02742 1.03712 1.23237 0.96107 0.96084 0.83062 0.88660 1.23339 0.92197 1.01624 0.99717 1.22763 1.01039 0.93380 0.96460 0.83473 1.23815 0.78287 0.85861 0.80851 1.90628 1.55532 1.65486 1.30957 1.86678 1.39833 1.40119 1.60647 1.21561 0.94114 0.82755 0.94740 1.18956 0.92560 1.07374 1.04293 1.20700 0.97142 0.95891 0.94580 1.21164 0.92571 1.07054 1.05689 1.18051 0.93193 0.89080 0.91153 1.19948 0.94271 1.38123 0.99716 0.90251 1.26831 1.05161 0.91344 0.94777 1.69872 1.33348 1.34873 1.06243 0.85121 0.75753 0.78986 0.79655 1.18062 1.18762 1.18978 1.21279 0.96894 1.01515 1.01652 1.20772 0.92364 0.98195 0.98461 1.22982 0.88886 0.97084 0.91902 1.88432 1.42491 1.65328 1.35231 0.89044 0.91317 0.92882 0.90460 0.87024 0.91333 0.91075 0.86505 0.87944 0.89845 0.87738 0.87492 0.88594 0.91983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.62 71.98 0.69 -1.27 16 2 C 0.07 1.13 4.07 31.26 0.13 1.26 16 3 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 4 C -0.13 -2.27 5.65 32.05 0.18 -2.09 16 5 C -0.12 -2.41 3.50 -10.28 -0.04 -2.45 16 6 H 0.15 2.31 8.14 -2.39 -0.02 2.29 16 7 C 0.47 13.59 7.13 71.24 0.51 14.10 16 8 O -0.54 -17.96 15.51 21.96 0.34 -17.61 16 9 O -0.36 -11.98 10.19 -51.44 -0.52 -12.50 16 10 C 0.14 5.06 5.58 71.24 0.40 5.46 16 11 C -0.23 -9.86 5.54 -19.67 -0.11 -9.97 16 12 C -0.06 -2.83 9.67 22.22 0.21 -2.62 16 13 C -0.25 -11.94 9.80 22.73 0.22 -11.72 16 14 C 0.09 4.70 5.58 -21.29 -0.12 4.58 16 15 C -0.49 -26.09 9.05 23.46 0.21 -25.87 16 16 H 0.08 4.05 7.91 -2.91 -0.02 4.03 16 17 C 0.03 1.72 5.14 85.26 0.44 2.16 16 18 N -0.82 -41.90 10.95 21.83 0.24 -41.67 16 19 Si 0.98 37.15 29.60 68.60 2.03 39.18 16 20 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 21 H -0.26 -9.52 7.11 99.48 0.71 -8.82 16 22 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 23 C -0.19 -10.13 8.70 22.73 0.20 -9.93 16 24 C -0.08 -3.67 9.67 22.22 0.21 -3.45 16 25 C 0.07 1.46 7.38 72.45 0.53 2.00 16 26 O -0.39 -8.67 11.05 -148.98 -1.65 -10.31 16 27 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.08 1.62 7.39 -2.39 -0.02 1.61 16 31 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.07 2.38 8.07 -2.39 -0.02 2.37 16 33 H 0.07 2.43 8.07 -2.39 -0.02 2.41 16 34 H 0.12 4.36 8.06 -2.91 -0.02 4.34 16 35 H 0.10 4.68 8.06 -2.91 -0.02 4.66 16 36 H 0.29 13.33 8.30 -92.71 -0.77 12.56 16 37 H 0.10 5.67 6.16 -2.91 -0.02 5.66 16 38 H 0.11 4.42 8.06 -2.91 -0.02 4.39 16 39 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 40 H 0.06 1.49 7.81 -2.39 -0.02 1.47 16 Total: -1.00 -61.79 339.55 5.15 -56.64 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: 1.03 Total: 26.10 kcal Atomic # 6 Polarization: -43.51 SS G_CDS: 3.68 Total: -39.83 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.24 Total: -41.67 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -1.83 Total: -40.43 kcal Atomic # 14 Polarization: 37.15 SS G_CDS: 2.03 Total: 39.18 kcal Total: -61.79 5.15 -56.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000784147462.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.372 kcal (2) G-P(sol) polarization free energy of solvation -61.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds