Wall clock time and date at job start Tue Mar 31 2020 06:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99855 * 2 1 4 4 H 1.48497 * 109.46885 * 239.99830 * 3 2 1 5 5 H 1.48499 * 109.47098 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47034 * 120.00184 * 3 2 1 7 7 C 1.37872 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00103 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00079 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99950 * 179.97438 * 10 9 7 12 12 O 1.21588 * 119.99884 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99798 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99746 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47315 * 180.02562 * 14 13 11 16 16 H 1.09001 * 109.69129 * 55.55656 * 15 14 13 17 17 C 1.53404 * 109.69653 * 295.00054 * 15 14 13 18 18 O 1.42827 * 108.38650 * 175.58436 * 17 15 14 19 19 C 1.35842 * 117.86244 * 49.21820 * 18 17 15 20 20 C 1.39145 * 118.50249 * 162.86408 * 19 18 17 21 21 C 1.37969 * 120.21528 * 179.55886 * 20 19 18 22 22 C 1.38292 * 119.95295 * 359.97438 * 21 20 19 23 23 C 1.38097 * 119.99007 * 0.08516 * 22 21 20 24 24 C 1.38375 * 121.80026 * 342.58047 * 19 18 17 25 25 C 1.50770 * 121.39923 * 0.82696 * 24 19 18 26 26 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46496 * 60.00284 * 9 7 2 28 28 H 1.08990 * 109.47127 * 300.00382 * 9 7 2 29 29 H 0.97002 * 120.00002 * 0.02562 * 10 9 7 30 30 H 0.96998 * 120.00241 * 0.02562 * 13 11 10 31 31 H 1.09000 * 109.47532 * 60.00107 * 14 13 11 32 32 H 1.09004 * 109.47455 * 299.99966 * 14 13 11 33 33 H 1.09001 * 109.67873 * 55.86468 * 17 15 14 34 34 H 1.09001 * 109.68134 * 295.31167 * 17 15 14 35 35 H 1.08000 * 119.89106 * 359.51954 * 20 19 18 36 36 H 1.07995 * 120.02551 * 180.02562 * 21 20 19 37 37 H 1.08005 * 120.00109 * 180.10432 * 22 21 20 38 38 H 1.08003 * 119.84699 * 179.97438 * 23 22 21 39 39 H 1.09002 * 109.43273 * 101.99323 * 25 24 19 40 40 H 1.08991 * 109.43878 * 221.87157 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 1.7538 -4.8833 -0.0015 12 8 0.5584 -5.1055 -0.0006 13 7 2.6297 -5.9077 -0.0021 14 6 2.1414 -7.2889 -0.0023 15 6 3.3314 -8.2506 -0.0024 16 1 3.9818 -8.0302 0.8440 17 6 4.1172 -8.1007 -1.3113 18 8 5.2760 -8.9326 -1.2388 19 6 5.1076 -10.2232 -0.8501 20 6 6.1259 -11.1342 -1.1133 21 6 5.9960 -12.4520 -0.7258 22 6 4.8507 -12.8700 -0.0731 23 6 3.8375 -11.9689 0.1888 24 6 3.9612 -10.6454 -0.2002 25 6 2.8292 -9.6938 0.0936 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5566 -0.8904 28 1 0.6248 -2.5571 0.8896 29 1 3.1568 -3.4354 -0.0021 30 1 3.5834 -5.7304 -0.0024 31 1 1.5355 -7.4600 -0.8921 32 1 1.5361 -7.4605 0.8878 33 1 4.4191 -7.0614 -1.4412 34 1 3.4948 -8.4104 -2.1507 35 1 7.0206 -10.8088 -1.6233 36 1 6.7884 -13.1564 -0.9314 37 1 4.7489 -13.9010 0.2321 38 1 2.9439 -12.2980 0.6984 39 1 2.0283 -9.8487 -0.6294 40 1 2.4508 -9.8797 1.0987 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787349091.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:31 Heat of formation + Delta-G solvation = -56.737361 kcal Electronic energy + Delta-G solvation = -21930.499066 eV Core-core repulsion = 18516.768356 eV Total energy + Delta-G solvation = -3413.730710 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.03268 -39.23594 -37.81452 -36.02863 -34.14039 -33.45706 -32.27979 -30.87381 -30.54046 -27.45021 -26.12272 -25.74273 -23.11191 -22.67176 -21.95137 -20.40733 -19.94284 -18.18038 -18.04206 -16.77151 -16.43286 -15.98012 -15.55050 -15.45984 -15.02649 -14.67572 -14.58092 -14.23874 -14.03923 -13.61586 -13.52906 -13.30376 -13.07821 -12.79610 -12.47332 -11.96227 -11.87140 -11.72473 -11.66842 -11.18012 -11.02975 -10.96024 -10.86576 -10.63487 -10.30164 -9.45217 -9.38210 -9.08984 -8.82793 -8.68806 -8.42626 -7.77384 -6.14898 -4.21642 1.01431 1.14297 3.02480 3.25681 3.26248 3.31478 3.34950 3.46610 3.92203 4.26869 4.30621 4.32802 4.39214 4.57245 4.73277 4.82366 4.93631 5.07356 5.11197 5.17464 5.21034 5.22871 5.31595 5.37336 5.52753 5.61420 5.72365 5.79391 5.93579 6.00375 6.17035 6.23358 6.48691 6.78123 7.08932 7.18669 7.50306 7.54046 7.57033 7.89413 8.03685 8.76004 8.92614 9.31788 9.47585 10.95266 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.041513 B = 0.002441 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.329712 B =11468.006473 C =12008.520915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.905 3.095 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.729 5.729 11 C 0.693 3.307 12 O -0.600 6.600 13 N -0.760 5.760 14 C 0.151 3.849 15 C -0.137 4.137 16 H 0.092 0.908 17 C 0.065 3.935 18 O -0.315 6.315 19 C 0.132 3.868 20 C -0.151 4.151 21 C -0.090 4.090 22 C -0.155 4.155 23 C -0.084 4.084 24 C -0.157 4.157 25 C -0.071 4.071 26 H 0.266 0.734 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.386 0.614 30 H 0.391 0.609 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.111 0.889 34 H 0.069 0.931 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.084 0.916 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.829 -24.412 -0.962 27.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.732 3.268 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.201 1.201 7 C -0.581 4.581 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.381 5.381 11 C 0.392 3.608 12 O -0.479 6.479 13 N -0.419 5.419 14 C 0.026 3.974 15 C -0.156 4.156 16 H 0.110 0.890 17 C -0.010 4.010 18 O -0.228 6.228 19 C 0.087 3.913 20 C -0.169 4.169 21 C -0.108 4.108 22 C -0.173 4.173 23 C -0.103 4.103 24 C -0.158 4.158 25 C -0.108 4.108 26 H 0.076 0.924 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.218 0.782 30 H 0.224 0.776 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.129 0.871 34 H 0.087 0.913 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.102 0.898 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 10.666 -24.326 -1.017 26.581 hybrid contribution 1.097 1.068 0.090 1.534 sum 11.762 -23.258 -0.927 26.079 Atomic orbital electron populations 1.69970 1.06083 1.27382 1.48851 1.24948 0.94927 0.99404 0.94768 0.86466 0.79391 0.82315 0.78660 1.20086 1.21082 1.20097 1.21190 0.93229 0.90451 1.53239 0.91998 1.18979 0.87770 0.81047 0.97611 1.45728 1.10817 1.04429 1.77138 1.16135 0.85162 0.81054 0.78402 1.90878 1.14222 1.84244 1.58591 1.45184 1.08840 1.05089 1.82748 1.20958 0.94313 0.79367 1.02792 1.22088 0.98397 0.95681 0.99437 0.88953 1.23107 0.86073 0.94818 0.96977 1.86017 1.34836 1.18960 1.83013 1.18755 0.94162 0.83978 0.94395 1.20622 0.99508 0.92294 1.04485 1.20930 0.97747 0.94867 0.97286 1.21019 0.94501 0.99798 1.01966 1.20920 0.98863 0.91922 0.98547 1.19841 0.96583 0.95927 1.03418 1.20463 0.95750 0.91188 1.03449 0.92404 0.95734 0.95740 0.78150 0.77560 0.91486 0.91191 0.87110 0.91285 0.85288 0.85536 0.85944 0.85748 0.89779 0.89469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.19 13.29 55.43 0.74 -25.46 16 2 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 7 C -0.54 -14.78 9.28 -34.44 -0.32 -15.10 16 8 H 0.06 1.57 7.60 -52.48 -0.40 1.17 16 9 C 0.27 7.16 5.43 -5.19 -0.03 7.13 16 10 N -0.73 -15.49 5.55 -66.41 -0.37 -15.86 16 11 C 0.69 14.06 8.57 -86.92 -0.74 13.32 16 12 O -0.60 -14.89 16.34 5.29 0.09 -14.80 16 13 N -0.76 -10.74 5.26 -65.22 -0.34 -11.08 16 14 C 0.15 1.79 5.06 -4.04 -0.02 1.77 16 15 C -0.14 -1.26 2.46 -90.35 -0.22 -1.48 16 16 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 17 C 0.07 0.61 6.23 37.37 0.23 0.85 16 18 O -0.31 -3.46 10.27 -19.24 -0.20 -3.65 16 19 C 0.13 1.40 6.47 -39.19 -0.25 1.14 16 20 C -0.15 -1.40 9.94 -39.34 -0.39 -1.79 16 21 C -0.09 -0.70 10.04 -39.66 -0.40 -1.10 16 22 C -0.15 -1.18 10.04 -39.61 -0.40 -1.58 16 23 C -0.08 -0.70 9.67 -39.53 -0.38 -1.08 16 24 C -0.16 -1.49 5.75 -104.44 -0.60 -2.09 16 25 C -0.07 -0.60 5.19 -27.79 -0.14 -0.74 16 26 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 27 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 28 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.39 6.97 8.34 -40.82 -0.34 6.63 16 30 H 0.39 4.38 7.69 -40.82 -0.31 4.07 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.11 0.96 7.14 -51.93 -0.37 0.59 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.13 0.68 8.06 -52.49 -0.42 0.25 16 37 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 38 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 39 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 337.54 15.07 5.09 5.09 Total: -1.00 -33.75 337.54 -9.42 -43.17 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.63 Total: 5.82 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -3.77 Total: 0.90 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: 0.02 Total: -52.39 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: -0.11 Total: -18.46 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.75 -9.42 -43.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787349091.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.567 kcal (2) G-P(sol) polarization free energy of solvation -33.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds