Wall clock time and date at job start Tue Mar 31 2020 06:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99855 * 2 1 4 4 H 1.48497 * 109.46885 * 239.99830 * 3 2 1 5 5 H 1.48499 * 109.47098 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47034 * 120.00184 * 3 2 1 7 7 C 1.37872 * 120.00059 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00103 * 179.97438 * 7 2 1 9 9 C 1.50704 * 120.00079 * 359.97438 * 7 2 1 10 10 N 1.46498 * 109.47148 * 179.97438 * 9 7 2 11 11 C 1.34773 * 119.99950 * 179.97438 * 10 9 7 12 12 O 1.21588 * 119.99884 * 0.02562 * 11 10 9 13 13 N 1.34778 * 119.99798 * 180.02562 * 11 10 9 14 14 C 1.46502 * 119.99746 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47315 * 180.02562 * 14 13 11 16 16 H 1.09001 * 109.69129 * 55.55656 * 15 14 13 17 17 C 1.53404 * 109.69653 * 295.00054 * 15 14 13 18 18 O 1.42827 * 108.38650 * 175.58436 * 17 15 14 19 19 C 1.35842 * 117.86244 * 49.21820 * 18 17 15 20 20 C 1.39145 * 118.50249 * 162.86408 * 19 18 17 21 21 C 1.37969 * 120.21528 * 179.55886 * 20 19 18 22 22 C 1.38292 * 119.95295 * 359.97438 * 21 20 19 23 23 C 1.38097 * 119.99007 * 0.08516 * 22 21 20 24 24 C 1.38375 * 121.80026 * 342.58047 * 19 18 17 25 25 C 1.50770 * 121.39923 * 0.82696 * 24 19 18 26 26 H 0.96999 * 119.99863 * 0.02562 * 1 2 3 27 27 H 1.09006 * 109.46496 * 60.00284 * 9 7 2 28 28 H 1.08990 * 109.47127 * 300.00382 * 9 7 2 29 29 H 0.97002 * 120.00002 * 0.02562 * 10 9 7 30 30 H 0.96998 * 120.00241 * 0.02562 * 13 11 10 31 31 H 1.09000 * 109.47532 * 60.00107 * 14 13 11 32 32 H 1.09004 * 109.47455 * 299.99966 * 14 13 11 33 33 H 1.09001 * 109.67873 * 55.86468 * 17 15 14 34 34 H 1.09001 * 109.68134 * 295.31167 * 17 15 14 35 35 H 1.08000 * 119.89106 * 359.51954 * 20 19 18 36 36 H 1.07995 * 120.02551 * 180.02562 * 21 20 19 37 37 H 1.08005 * 120.00109 * 180.10432 * 22 21 20 38 38 H 1.08003 * 119.84699 * 179.97438 * 23 22 21 39 39 H 1.09002 * 109.43273 * 101.99323 * 25 24 19 40 40 H 1.08991 * 109.43878 * 221.87157 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1030 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 7 2.2031 -3.6126 -0.0018 11 6 1.7538 -4.8833 -0.0015 12 8 0.5584 -5.1055 -0.0006 13 7 2.6297 -5.9077 -0.0021 14 6 2.1414 -7.2889 -0.0023 15 6 3.3314 -8.2506 -0.0024 16 1 3.9818 -8.0302 0.8440 17 6 4.1172 -8.1007 -1.3113 18 8 5.2760 -8.9326 -1.2388 19 6 5.1076 -10.2232 -0.8501 20 6 6.1259 -11.1342 -1.1133 21 6 5.9960 -12.4520 -0.7258 22 6 4.8507 -12.8700 -0.0731 23 6 3.8375 -11.9689 0.1888 24 6 3.9612 -10.6454 -0.2002 25 6 2.8292 -9.6938 0.0936 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5566 -0.8904 28 1 0.6248 -2.5571 0.8896 29 1 3.1568 -3.4354 -0.0021 30 1 3.5834 -5.7304 -0.0024 31 1 1.5355 -7.4600 -0.8921 32 1 1.5361 -7.4605 0.8878 33 1 4.4191 -7.0614 -1.4412 34 1 3.4948 -8.4104 -2.1507 35 1 7.0206 -10.8088 -1.6233 36 1 6.7884 -13.1564 -0.9314 37 1 4.7489 -13.9010 0.2321 38 1 2.9439 -12.2980 0.6984 39 1 2.0283 -9.8487 -0.6294 40 1 2.4508 -9.8797 1.0987 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787349091.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:31 Heat of formation + Delta-G solvation = -80.183300 kcal Electronic energy + Delta-G solvation = -21931.515758 eV Core-core repulsion = 18516.768356 eV Total energy + Delta-G solvation = -3414.747402 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.77408 -40.80757 -38.53060 -37.09670 -36.05319 -34.68364 -34.14634 -31.76504 -31.18795 -29.29717 -27.03811 -26.72596 -24.60881 -23.68362 -22.90694 -21.91040 -20.88179 -19.74369 -18.80123 -18.11161 -17.60014 -17.24954 -16.83676 -16.64527 -16.31475 -15.94822 -15.60775 -15.37739 -14.95056 -14.87302 -14.50744 -14.39553 -14.07626 -14.01663 -13.99682 -13.47218 -13.22074 -12.90413 -12.67144 -12.50386 -12.34207 -12.22506 -11.92921 -11.74903 -11.48897 -11.36872 -11.25190 -10.78492 -10.28505 -9.71829 -9.58941 -9.10614 -8.27303 -6.43689 0.38560 0.49067 1.44142 1.48490 1.56416 1.86485 2.24192 2.32459 2.40373 2.82686 3.07523 3.43987 3.52193 3.56699 3.72596 3.90300 4.06573 4.19197 4.29421 4.42546 4.49839 4.52995 4.59937 4.66621 4.71576 4.83067 4.97695 5.06538 5.09932 5.15293 5.28597 5.37543 5.48835 5.51009 5.54581 5.62449 5.68102 5.86219 5.89227 6.24519 6.48152 6.67900 7.25304 7.30778 7.72278 8.84719 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.041513 B = 0.002441 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.329712 B =11468.006473 C =12008.520915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.263 1.263 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.285 3.715 10 N -0.724 5.724 11 C 0.692 3.308 12 O -0.648 6.648 13 N -0.734 5.734 14 C 0.152 3.848 15 C -0.120 4.120 16 H 0.095 0.905 17 C 0.063 3.937 18 O -0.328 6.328 19 C 0.105 3.895 20 C -0.166 4.166 21 C -0.092 4.092 22 C -0.156 4.156 23 C -0.092 4.092 24 C -0.168 4.168 25 C -0.070 4.070 26 H 0.269 0.731 27 H -0.014 1.014 28 H -0.014 1.014 29 H 0.405 0.595 30 H 0.410 0.590 31 H 0.063 0.937 32 H 0.065 0.935 33 H 0.117 0.883 34 H 0.069 0.931 35 H 0.133 0.867 36 H 0.151 0.849 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.089 0.911 40 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.040 -25.289 -0.714 28.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.809 3.191 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.187 1.187 7 C -0.593 4.593 8 H 0.102 0.898 9 C 0.162 3.838 10 N -0.377 5.377 11 C 0.391 3.609 12 O -0.531 6.531 13 N -0.392 5.392 14 C 0.028 3.972 15 C -0.139 4.139 16 H 0.113 0.887 17 C -0.012 4.012 18 O -0.242 6.242 19 C 0.060 3.940 20 C -0.184 4.184 21 C -0.110 4.110 22 C -0.174 4.174 23 C -0.110 4.110 24 C -0.169 4.169 25 C -0.107 4.107 26 H 0.077 0.923 27 H 0.004 0.996 28 H 0.003 0.997 29 H 0.240 0.760 30 H 0.246 0.754 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.135 0.865 34 H 0.088 0.912 35 H 0.151 0.849 36 H 0.169 0.831 37 H 0.164 0.836 38 H 0.161 0.839 39 H 0.107 0.893 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 12.963 -25.264 -0.770 28.406 hybrid contribution 0.411 1.177 0.010 1.247 sum 13.373 -24.086 -0.760 27.561 Atomic orbital electron populations 1.70137 1.08233 1.28609 1.49908 1.26065 0.95797 1.03863 0.93919 0.85197 0.77880 0.76596 0.79459 1.18676 1.21125 1.18711 1.21577 0.94310 0.90507 1.52942 0.89838 1.18401 0.88099 0.83319 0.93981 1.45308 1.10924 1.03882 1.77624 1.16285 0.85085 0.81572 0.77910 1.90846 1.16712 1.84956 1.60561 1.44933 1.09030 1.04642 1.80601 1.21081 0.95525 0.78243 1.02390 1.21915 0.96992 0.95475 0.99548 0.88690 1.23158 0.86004 0.95087 0.96966 1.85994 1.35326 1.19485 1.83419 1.19052 0.95224 0.84022 0.95690 1.20867 0.99610 0.92990 1.04948 1.21270 0.98534 0.94635 0.96523 1.21384 0.94027 1.00901 1.01077 1.21220 0.99828 0.91548 0.98414 1.19990 0.96482 0.96728 1.03696 1.20477 0.95677 0.90242 1.04304 0.92250 0.99601 0.99651 0.75985 0.75377 0.91911 0.91669 0.86472 0.91246 0.84873 0.83135 0.83557 0.83948 0.89308 0.88336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.30 13.29 21.45 0.28 -56.01 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.99 42.32 29.54 68.60 2.03 44.35 16 4 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 5 H -0.29 -12.19 7.11 99.48 0.71 -11.48 16 6 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 7 C -0.56 -30.29 9.28 25.60 0.24 -30.05 16 8 H 0.08 4.09 7.60 -2.91 -0.02 4.07 16 9 C 0.29 15.84 5.43 85.63 0.46 16.30 16 10 N -0.72 -30.95 5.55 -482.30 -2.68 -33.63 16 11 C 0.69 28.31 8.57 179.06 1.53 29.84 16 12 O -0.65 -33.13 16.34 -3.99 -0.07 -33.20 16 13 N -0.73 -20.05 5.26 -478.52 -2.52 -22.57 16 14 C 0.15 3.49 5.06 86.38 0.44 3.92 16 15 C -0.12 -2.06 2.46 -10.62 -0.03 -2.08 16 16 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 17 C 0.06 1.12 6.23 72.12 0.45 1.57 16 18 O -0.33 -6.99 10.27 -91.77 -0.94 -7.93 16 19 C 0.10 2.12 6.47 22.52 0.15 2.27 16 20 C -0.17 -2.91 9.94 22.42 0.22 -2.69 16 21 C -0.09 -1.24 10.04 22.22 0.22 -1.02 16 22 C -0.16 -2.00 10.04 22.25 0.22 -1.78 16 23 C -0.09 -1.34 9.67 22.30 0.22 -1.12 16 24 C -0.17 -2.97 5.75 -19.75 -0.11 -3.08 16 25 C -0.07 -1.08 5.19 29.91 0.16 -0.92 16 26 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 27 H -0.01 -0.87 8.14 -2.38 -0.02 -0.89 16 28 H -0.01 -0.90 8.14 -2.39 -0.02 -0.92 16 29 H 0.40 14.15 8.34 -92.71 -0.77 13.37 16 30 H 0.41 8.42 7.69 -92.71 -0.71 7.71 16 31 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.12 1.86 7.14 -2.39 -0.02 1.84 16 34 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 37 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 38 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 39 H 0.09 1.28 8.10 -2.39 -0.02 1.27 16 40 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -75.05 337.54 0.32 -74.74 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: -0.42 Total: 22.46 kcal Atomic # 6 Polarization: 7.16 SS G_CDS: 4.63 Total: 11.79 kcal Atomic # 7 Polarization: -107.30 SS G_CDS: -4.91 Total: -112.21 kcal Atomic # 8 Polarization: -40.12 SS G_CDS: -1.01 Total: -41.13 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -75.05 0.32 -74.74 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787349091.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.445 kcal (2) G-P(sol) polarization free energy of solvation -75.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds