Wall clock time and date at job start Tue Mar 31 2020 06:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99895 * 2 1 4 4 H 1.48498 * 109.46966 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47104 * 299.99766 * 3 2 1 6 6 H 1.48494 * 109.47261 * 60.00145 * 3 2 1 7 7 C 1.37873 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99709 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00396 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47368 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00471 * 180.02562 * 10 9 7 12 12 O 1.21589 * 119.99581 * 359.97438 * 11 10 9 13 13 N 1.34769 * 120.00429 * 180.02562 * 11 10 9 14 14 C 1.46504 * 120.00276 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47252 * 179.97438 * 14 13 11 16 16 H 1.09001 * 109.68862 * 304.44341 * 15 14 13 17 17 C 1.53397 * 109.69677 * 64.99794 * 15 14 13 18 18 O 1.42826 * 108.37988 * 184.41216 * 17 15 14 19 19 C 1.35839 * 117.84969 * 310.72448 * 18 17 15 20 20 C 1.39144 * 118.50403 * 197.23107 * 19 18 17 21 21 C 1.37978 * 120.21198 * 180.17317 * 20 19 18 22 22 C 1.38283 * 119.95896 * 0.27646 * 21 20 19 23 23 C 1.38112 * 119.98712 * 359.89995 * 22 21 20 24 24 C 1.38370 * 121.79838 * 17.73461 * 19 18 17 25 25 C 1.50774 * 121.40092 * 359.17797 * 24 19 18 26 26 H 0.97004 * 119.99786 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.46830 * 60.00329 * 9 7 2 28 28 H 1.08993 * 109.47100 * 300.00735 * 9 7 2 29 29 H 0.97004 * 120.00239 * 0.02562 * 10 9 7 30 30 H 0.97004 * 120.00281 * 359.97438 * 13 11 10 31 31 H 1.08999 * 109.47013 * 59.98966 * 14 13 11 32 32 H 1.09004 * 109.46803 * 299.99788 * 14 13 11 33 33 H 1.08995 * 109.68373 * 64.68913 * 17 15 14 34 34 H 1.09000 * 109.68447 * 304.13130 * 17 15 14 35 35 H 1.08002 * 119.89570 * 0.45761 * 20 19 18 36 36 H 1.08003 * 120.01566 * 180.29488 * 21 20 19 37 37 H 1.08001 * 120.01065 * 179.88116 * 22 21 20 38 38 H 1.07997 * 119.84218 * 179.97438 * 23 22 21 39 39 H 1.09002 * 109.43667 * 138.28543 * 25 24 19 40 40 H 1.09002 * 109.43509 * 258.15749 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6126 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5583 -5.1055 -0.0011 13 7 2.6295 -5.9077 -0.0005 14 6 2.1412 -7.2890 -0.0017 15 6 3.3312 -8.2507 -0.0014 16 1 3.9822 -8.0295 -0.8472 17 6 4.1161 -8.1016 1.3081 18 8 5.2748 -8.9335 1.2358 19 6 5.1062 -10.2241 0.8471 20 6 6.1234 -11.1358 1.1122 21 6 5.9906 -12.4548 0.7296 22 6 4.8461 -12.8723 0.0755 23 6 3.8359 -11.9694 -0.1925 24 6 3.9624 -10.6446 0.1916 25 6 2.8337 -9.6912 -0.1090 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5567 -0.8904 28 1 0.6246 -2.5570 0.8896 29 1 3.1566 -3.4355 -0.0002 30 1 3.5832 -5.7306 -0.0002 31 1 1.5365 -7.4598 -0.8923 32 1 1.5347 -7.4607 0.8876 33 1 3.4931 -8.4120 2.1469 34 1 4.4179 -7.0624 1.4390 35 1 7.0177 -10.8109 1.6231 36 1 6.7801 -13.1608 0.9412 37 1 4.7421 -13.9041 -0.2260 38 1 2.9432 -12.2979 -0.7038 39 1 2.4584 -9.8791 -1.1149 40 1 2.0299 -9.8422 0.6116 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787349093.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:33 Heat of formation + Delta-G solvation = -56.841335 kcal Electronic energy + Delta-G solvation = -21931.281625 eV Core-core repulsion = 18517.546407 eV Total energy + Delta-G solvation = -3413.735218 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.03799 -39.23702 -37.81566 -36.03844 -34.14330 -33.46156 -32.28228 -30.87577 -30.54252 -27.45286 -26.13179 -25.74285 -23.11399 -22.67475 -21.95575 -20.40541 -19.93665 -18.18401 -18.04349 -16.77494 -16.43838 -15.98566 -15.55134 -15.46522 -15.02636 -14.67369 -14.58210 -14.24224 -14.04066 -13.61084 -13.52486 -13.30512 -13.07578 -12.79989 -12.48018 -11.98045 -11.87204 -11.72669 -11.66277 -11.18740 -11.02517 -10.92054 -10.90452 -10.63571 -10.30558 -9.45378 -9.35261 -9.08874 -8.83034 -8.69809 -8.42720 -7.77495 -6.15504 -4.21970 1.01394 1.14186 3.02383 3.24179 3.25732 3.32200 3.36142 3.46628 3.92124 4.26600 4.30998 4.32441 4.39139 4.56888 4.73329 4.82510 4.94066 5.07386 5.11133 5.17446 5.20730 5.22754 5.31766 5.37582 5.52507 5.61400 5.72350 5.79459 5.93409 6.00353 6.17051 6.23308 6.48664 6.78041 7.08850 7.18588 7.50365 7.54408 7.56793 7.89126 8.03377 8.76210 8.92511 9.31708 9.47417 10.94779 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.041543 B = 0.002441 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.832127 B =11468.600744 C =12008.669326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.266 3.734 10 N -0.729 5.729 11 C 0.693 3.307 12 O -0.600 6.600 13 N -0.760 5.760 14 C 0.151 3.849 15 C -0.137 4.137 16 H 0.092 0.908 17 C 0.066 3.934 18 O -0.315 6.315 19 C 0.132 3.868 20 C -0.150 4.150 21 C -0.090 4.090 22 C -0.155 4.155 23 C -0.084 4.084 24 C -0.157 4.157 25 C -0.071 4.071 26 H 0.265 0.735 27 H 0.025 0.975 28 H 0.025 0.975 29 H 0.386 0.614 30 H 0.391 0.609 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.111 0.889 35 H 0.129 0.871 36 H 0.127 0.873 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.088 0.912 40 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.849 -24.434 0.953 27.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.732 3.268 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.381 5.381 11 C 0.392 3.608 12 O -0.479 6.479 13 N -0.419 5.419 14 C 0.026 3.974 15 C -0.156 4.156 16 H 0.110 0.890 17 C -0.009 4.009 18 O -0.228 6.228 19 C 0.087 3.913 20 C -0.169 4.169 21 C -0.108 4.108 22 C -0.173 4.173 23 C -0.103 4.103 24 C -0.157 4.157 25 C -0.109 4.109 26 H 0.075 0.925 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.219 0.781 30 H 0.224 0.776 31 H 0.088 0.912 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.129 0.871 35 H 0.147 0.853 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.106 0.894 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.694 -24.353 1.010 26.617 hybrid contribution 1.071 1.075 -0.090 1.520 sum 11.765 -23.278 0.920 26.099 Atomic orbital electron populations 1.69991 1.06086 1.27153 1.49048 1.24953 0.94926 0.99434 0.94789 0.86354 0.79797 0.82966 0.77729 1.19669 1.20819 1.20811 1.21264 0.93303 0.90422 1.52968 0.91893 1.18988 0.87785 0.81082 0.97622 1.45728 1.10818 1.04424 1.77143 1.16134 0.85162 0.81055 0.78402 1.90878 1.14224 1.84246 1.58591 1.45183 1.08843 1.05085 1.82741 1.20955 0.94297 0.79368 1.02793 1.22018 0.98444 0.95725 0.99437 0.89017 1.23097 0.86060 0.94829 0.96943 1.86017 1.34830 1.18964 1.83018 1.18751 0.94183 0.83987 0.94382 1.20625 0.99505 0.92280 1.04493 1.20931 0.97744 0.94854 0.97306 1.21020 0.94524 0.99791 1.01943 1.20923 0.98862 0.91895 0.98574 1.19837 0.96658 0.95906 1.03344 1.20404 0.95817 0.91205 1.03427 0.92519 0.95732 0.95727 0.78145 0.77557 0.91193 0.91482 0.91289 0.87088 0.85286 0.85535 0.85942 0.85745 0.89397 0.89871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.90 29.54 -169.99 -5.02 15.88 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 7 C -0.54 -14.73 9.28 -34.44 -0.32 -15.05 16 8 H 0.06 1.60 7.60 -52.48 -0.40 1.21 16 9 C 0.27 7.14 5.43 -5.20 -0.03 7.11 16 10 N -0.73 -15.49 5.55 -66.42 -0.37 -15.85 16 11 C 0.69 14.06 8.57 -86.92 -0.74 13.31 16 12 O -0.60 -14.89 16.34 5.29 0.09 -14.80 16 13 N -0.76 -10.73 5.26 -65.22 -0.34 -11.07 16 14 C 0.15 1.79 5.06 -4.04 -0.02 1.77 16 15 C -0.14 -1.26 2.43 -90.53 -0.22 -1.48 16 16 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 17 C 0.07 0.62 6.24 37.36 0.23 0.85 16 18 O -0.31 -3.46 10.27 -19.23 -0.20 -3.65 16 19 C 0.13 1.39 6.47 -39.20 -0.25 1.14 16 20 C -0.15 -1.40 9.94 -39.34 -0.39 -1.79 16 21 C -0.09 -0.70 10.04 -39.66 -0.40 -1.10 16 22 C -0.15 -1.18 10.04 -39.61 -0.40 -1.58 16 23 C -0.08 -0.70 9.67 -39.53 -0.38 -1.08 16 24 C -0.16 -1.49 5.75 -104.44 -0.60 -2.09 16 25 C -0.07 -0.60 5.20 -27.96 -0.15 -0.74 16 26 H 0.27 7.32 8.31 -40.82 -0.34 6.98 16 27 H 0.02 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.39 6.97 8.34 -40.82 -0.34 6.63 16 30 H 0.39 4.38 7.69 -40.82 -0.31 4.07 16 31 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.11 0.96 7.14 -51.93 -0.37 0.59 16 35 H 0.13 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 37 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 38 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.66 8.08 -51.93 -0.42 0.24 16 LS Contribution 337.51 15.07 5.09 5.09 Total: -1.00 -33.79 337.51 -9.42 -43.21 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.63 Total: 5.75 kcal Atomic # 6 Polarization: 4.68 SS G_CDS: -3.77 Total: 0.91 kcal Atomic # 7 Polarization: -52.40 SS G_CDS: 0.02 Total: -52.38 kcal Atomic # 8 Polarization: -18.34 SS G_CDS: -0.11 Total: -18.46 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -33.79 -9.42 -43.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787349093.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.633 kcal (2) G-P(sol) polarization free energy of solvation -33.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds