Wall clock time and date at job start Tue Mar 31 2020 06:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99895 * 2 1 4 4 H 1.48498 * 109.46966 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47104 * 299.99766 * 3 2 1 6 6 H 1.48494 * 109.47261 * 60.00145 * 3 2 1 7 7 C 1.37873 * 119.99719 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99709 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00396 * 359.97438 * 7 2 1 10 10 N 1.46495 * 109.47368 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00471 * 180.02562 * 10 9 7 12 12 O 1.21589 * 119.99581 * 359.97438 * 11 10 9 13 13 N 1.34769 * 120.00429 * 180.02562 * 11 10 9 14 14 C 1.46504 * 120.00276 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47252 * 179.97438 * 14 13 11 16 16 H 1.09001 * 109.68862 * 304.44341 * 15 14 13 17 17 C 1.53397 * 109.69677 * 64.99794 * 15 14 13 18 18 O 1.42826 * 108.37988 * 184.41216 * 17 15 14 19 19 C 1.35839 * 117.84969 * 310.72448 * 18 17 15 20 20 C 1.39144 * 118.50403 * 197.23107 * 19 18 17 21 21 C 1.37978 * 120.21198 * 180.17317 * 20 19 18 22 22 C 1.38283 * 119.95896 * 0.27646 * 21 20 19 23 23 C 1.38112 * 119.98712 * 359.89995 * 22 21 20 24 24 C 1.38370 * 121.79838 * 17.73461 * 19 18 17 25 25 C 1.50774 * 121.40092 * 359.17797 * 24 19 18 26 26 H 0.97004 * 119.99786 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.46830 * 60.00329 * 9 7 2 28 28 H 1.08993 * 109.47100 * 300.00735 * 9 7 2 29 29 H 0.97004 * 120.00239 * 0.02562 * 10 9 7 30 30 H 0.97004 * 120.00281 * 359.97438 * 13 11 10 31 31 H 1.08999 * 109.47013 * 59.98966 * 14 13 11 32 32 H 1.09004 * 109.46803 * 299.99788 * 14 13 11 33 33 H 1.08995 * 109.68373 * 64.68913 * 17 15 14 34 34 H 1.09000 * 109.68447 * 304.13130 * 17 15 14 35 35 H 1.08002 * 119.89570 * 0.45761 * 20 19 18 36 36 H 1.08003 * 120.01566 * 180.29488 * 21 20 19 37 37 H 1.08001 * 120.01065 * 179.88116 * 22 21 20 38 38 H 1.07997 * 119.84218 * 179.97438 * 23 22 21 39 39 H 1.09002 * 109.43667 * 138.28543 * 25 24 19 40 40 H 1.09002 * 109.43509 * 258.15749 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 7 2.2029 -3.6126 -0.0005 11 6 1.7537 -4.8834 -0.0011 12 8 0.5583 -5.1055 -0.0011 13 7 2.6295 -5.9077 -0.0005 14 6 2.1412 -7.2890 -0.0017 15 6 3.3312 -8.2507 -0.0014 16 1 3.9822 -8.0295 -0.8472 17 6 4.1161 -8.1016 1.3081 18 8 5.2748 -8.9335 1.2358 19 6 5.1062 -10.2241 0.8471 20 6 6.1234 -11.1358 1.1122 21 6 5.9906 -12.4548 0.7296 22 6 4.8461 -12.8723 0.0755 23 6 3.8359 -11.9694 -0.1925 24 6 3.9624 -10.6446 0.1916 25 6 2.8337 -9.6912 -0.1090 26 1 -0.4850 0.8401 -0.0004 27 1 0.6240 -2.5567 -0.8904 28 1 0.6246 -2.5570 0.8896 29 1 3.1566 -3.4355 -0.0002 30 1 3.5832 -5.7306 -0.0002 31 1 1.5365 -7.4598 -0.8923 32 1 1.5347 -7.4607 0.8876 33 1 3.4931 -8.4120 2.1469 34 1 4.4179 -7.0624 1.4390 35 1 7.0177 -10.8109 1.6231 36 1 6.7801 -13.1608 0.9412 37 1 4.7421 -13.9041 -0.2260 38 1 2.9432 -12.2979 -0.7038 39 1 2.4584 -9.8791 -1.1149 40 1 2.0299 -9.8422 0.6116 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787349093.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:33 Heat of formation + Delta-G solvation = -80.317940 kcal Electronic energy + Delta-G solvation = -21932.299647 eV Core-core repulsion = 18517.546407 eV Total energy + Delta-G solvation = -3414.753240 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.77937 -40.80786 -38.53176 -37.10386 -36.05585 -34.68910 -34.15019 -31.76610 -31.18952 -29.30065 -27.03984 -26.73385 -24.61163 -23.68530 -22.91073 -21.91032 -20.87369 -19.74368 -18.80565 -18.11882 -17.60641 -17.25077 -16.84004 -16.64654 -16.31027 -15.94623 -15.61248 -15.37926 -14.94874 -14.87316 -14.50892 -14.39224 -14.08081 -14.01691 -14.01153 -13.47789 -13.22730 -12.85930 -12.74589 -12.50414 -12.33248 -12.21163 -11.93341 -11.74942 -11.43923 -11.36920 -11.25205 -10.81078 -10.28630 -9.71706 -9.58974 -9.10688 -8.27903 -6.43959 0.38541 0.48974 1.44173 1.45488 1.58631 1.86522 2.24180 2.32410 2.39971 2.82690 3.07249 3.44147 3.52143 3.56255 3.72649 3.90196 4.06713 4.19724 4.29554 4.42520 4.49782 4.53047 4.59658 4.67048 4.71409 4.83139 4.97756 5.06438 5.09959 5.15207 5.28467 5.37545 5.49023 5.51096 5.54607 5.62423 5.68001 5.86181 5.89217 6.24428 6.48084 6.68187 7.25180 7.30658 7.72257 8.84617 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.041543 B = 0.002441 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 673.832127 B =11468.600744 C =12008.669326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.986 3.014 4 H -0.254 1.254 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.285 3.715 10 N -0.724 5.724 11 C 0.692 3.308 12 O -0.648 6.648 13 N -0.734 5.734 14 C 0.152 3.848 15 C -0.120 4.120 16 H 0.094 0.906 17 C 0.063 3.937 18 O -0.328 6.328 19 C 0.105 3.895 20 C -0.166 4.166 21 C -0.092 4.092 22 C -0.156 4.156 23 C -0.092 4.092 24 C -0.168 4.168 25 C -0.070 4.070 26 H 0.269 0.731 27 H -0.014 1.014 28 H -0.014 1.014 29 H 0.405 0.595 30 H 0.410 0.590 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.118 0.882 35 H 0.133 0.867 36 H 0.151 0.849 37 H 0.147 0.853 38 H 0.143 0.857 39 H 0.099 0.901 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.056 -25.321 0.704 28.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.197 4.197 3 Si 0.809 3.191 4 H -0.177 1.177 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.591 4.591 8 H 0.102 0.898 9 C 0.161 3.839 10 N -0.377 5.377 11 C 0.392 3.608 12 O -0.531 6.531 13 N -0.392 5.392 14 C 0.028 3.972 15 C -0.139 4.139 16 H 0.112 0.888 17 C -0.012 4.012 18 O -0.242 6.242 19 C 0.060 3.940 20 C -0.184 4.184 21 C -0.110 4.110 22 C -0.174 4.174 23 C -0.110 4.110 24 C -0.169 4.169 25 C -0.107 4.107 26 H 0.077 0.923 27 H 0.004 0.996 28 H 0.004 0.996 29 H 0.240 0.760 30 H 0.246 0.754 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.136 0.864 35 H 0.151 0.849 36 H 0.169 0.831 37 H 0.164 0.836 38 H 0.161 0.839 39 H 0.117 0.883 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 12.987 -25.300 0.761 28.449 hybrid contribution 0.384 1.189 -0.010 1.249 sum 13.371 -24.112 0.751 27.581 Atomic orbital electron populations 1.70149 1.08237 1.28476 1.50063 1.26065 0.95801 1.03874 0.93958 0.85095 0.79040 0.77311 0.77648 1.17693 1.20493 1.20467 1.21633 0.94315 0.90481 1.52680 0.89835 1.18410 0.88111 0.83342 0.93998 1.45308 1.10923 1.03877 1.77630 1.16284 0.85083 0.81572 0.77910 1.90847 1.16714 1.84957 1.60561 1.44931 1.09034 1.04638 1.80595 1.21077 0.95507 0.78245 1.02391 1.21843 0.97037 0.95519 0.99548 0.88756 1.23149 0.85991 0.95101 0.96930 1.85994 1.35319 1.19488 1.83424 1.19049 0.95247 0.84032 0.95676 1.20870 0.99608 0.92976 1.04955 1.21271 0.98523 0.94626 0.96548 1.21386 0.94047 1.00898 1.01051 1.21223 0.99823 0.91519 0.98445 1.19987 0.96560 0.96709 1.03621 1.20418 0.95740 0.90267 1.04282 0.92259 0.99638 0.99584 0.75986 0.75374 0.91666 0.91913 0.91253 0.86444 0.84869 0.83132 0.83553 0.83943 0.88251 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.28 13.29 21.45 0.28 -56.00 16 2 C 0.00 0.14 5.46 84.65 0.46 0.60 16 3 Si 0.99 42.37 29.54 68.60 2.03 44.40 16 4 H -0.25 -10.05 7.11 99.48 0.71 -9.35 16 5 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 6 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.55 -30.15 9.28 25.60 0.24 -29.91 16 8 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 9 C 0.28 15.80 5.43 85.63 0.46 16.26 16 10 N -0.72 -30.93 5.55 -482.31 -2.68 -33.61 16 11 C 0.69 28.29 8.57 179.06 1.53 29.82 16 12 O -0.65 -33.12 16.34 -4.00 -0.07 -33.19 16 13 N -0.73 -20.04 5.26 -478.53 -2.52 -22.56 16 14 C 0.15 3.49 5.06 86.38 0.44 3.93 16 15 C -0.12 -2.06 2.43 -10.73 -0.03 -2.09 16 16 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 17 C 0.06 1.13 6.24 72.12 0.45 1.58 16 18 O -0.33 -6.99 10.27 -91.74 -0.94 -7.93 16 19 C 0.10 2.12 6.47 22.52 0.15 2.27 16 20 C -0.17 -2.91 9.94 22.43 0.22 -2.69 16 21 C -0.09 -1.24 10.04 22.22 0.22 -1.02 16 22 C -0.16 -2.00 10.04 22.25 0.22 -1.77 16 23 C -0.09 -1.34 9.67 22.30 0.22 -1.12 16 24 C -0.17 -2.97 5.75 -19.75 -0.11 -3.08 16 25 C -0.07 -1.08 5.20 29.80 0.15 -0.92 16 26 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 27 H -0.01 -0.90 8.14 -2.38 -0.02 -0.92 16 28 H -0.01 -0.86 8.14 -2.39 -0.02 -0.88 16 29 H 0.40 14.15 8.34 -92.70 -0.77 13.38 16 30 H 0.41 8.42 7.69 -92.70 -0.71 7.70 16 31 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.12 1.86 7.14 -2.39 -0.02 1.85 16 35 H 0.13 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.15 1.21 8.06 -2.91 -0.02 1.19 16 37 H 0.15 1.12 8.06 -2.91 -0.02 1.10 16 38 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 39 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.09 1.27 8.08 -2.39 -0.02 1.25 16 Total: -1.00 -75.10 337.51 0.32 -74.78 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: -0.42 Total: 22.25 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: 4.63 Total: 11.84 kcal Atomic # 7 Polarization: -107.26 SS G_CDS: -4.91 Total: -112.16 kcal Atomic # 8 Polarization: -40.11 SS G_CDS: -1.01 Total: -41.11 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -75.10 0.32 -74.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787349093.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.537 kcal (2) G-P(sol) polarization free energy of solvation -75.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds