Wall clock time and date at job start Tue Mar 31 2020 06:57:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86799 * 120.00013 * 2 1 4 4 H 1.48493 * 109.47388 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46859 * 300.00192 * 3 2 1 6 6 H 1.48503 * 109.47214 * 59.99966 * 3 2 1 7 7 C 1.37875 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00229 * 180.02562 * 7 2 1 9 9 C 1.50698 * 120.00127 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47323 * 180.02562 * 9 7 2 11 11 C 1.34779 * 120.00427 * 179.97438 * 10 9 7 12 12 O 1.21586 * 119.99742 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00239 * 180.02562 * 11 10 9 14 14 C 1.46497 * 119.99829 * 180.02562 * 13 11 10 15 15 C 1.52995 * 109.47097 * 179.97438 * 14 13 11 16 16 H 1.09005 * 109.34145 * 305.32900 * 15 14 13 17 17 O 1.42734 * 109.33817 * 65.00059 * 15 14 13 18 18 C 1.43217 * 113.13256 * 171.80978 * 17 15 14 19 19 C 1.52968 * 108.46505 * 289.29138 * 18 17 15 20 20 C 1.50746 * 109.76209 * 49.21392 * 19 18 17 21 21 C 1.38596 * 118.76209 * 163.35675 * 20 19 18 22 22 C 1.38071 * 120.27243 * 180.14520 * 21 20 19 23 23 C 1.38257 * 119.86193 * 359.43093 * 22 21 20 24 24 C 1.38047 * 119.89929 * 0.35069 * 23 22 21 25 25 C 1.37907 * 121.35096 * 343.07732 * 20 19 18 26 26 H 0.96995 * 120.00408 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46848 * 60.00463 * 9 7 2 28 28 H 1.09003 * 109.47335 * 300.00278 * 9 7 2 29 29 H 0.97006 * 119.99911 * 0.02562 * 10 9 7 30 30 H 0.96999 * 120.00110 * 0.02562 * 13 11 10 31 31 H 1.09000 * 109.47418 * 60.00061 * 14 13 11 32 32 H 1.08995 * 109.47137 * 300.00032 * 14 13 11 33 33 H 1.09000 * 109.63720 * 169.59963 * 18 17 15 34 34 H 1.09001 * 109.80687 * 49.08756 * 18 17 15 35 35 H 1.09000 * 109.42553 * 289.12324 * 19 18 17 36 36 H 1.08998 * 109.37587 * 169.27414 * 19 18 17 37 37 H 1.08000 * 119.86426 * 359.84514 * 21 20 19 38 38 H 1.08002 * 120.06927 * 179.73271 * 22 21 20 39 39 H 1.08007 * 120.04992 * 180.33281 * 23 22 21 40 40 H 1.08001 * 119.85433 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 6 1.7539 -4.8834 0.0000 12 8 0.5585 -5.1056 0.0000 13 7 2.6298 -5.9078 0.0005 14 6 2.1414 -7.2890 0.0005 15 6 3.3314 -8.2506 0.0005 16 1 3.9860 -8.0149 -0.8386 17 8 4.0568 -8.1050 1.2211 18 6 5.0779 -9.0948 1.3904 19 6 4.4062 -10.4430 1.6574 20 6 3.3312 -10.6893 0.6297 21 6 2.8435 -11.9768 0.4703 22 6 1.8610 -12.2382 -0.4639 23 6 1.3533 -11.2093 -1.2353 24 6 1.8354 -9.9259 -1.0740 25 6 2.8273 -9.6632 -0.1416 26 1 -0.4850 0.8400 -0.0004 27 1 0.6242 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8897 29 1 3.1568 -3.4354 -0.0002 30 1 3.5834 -5.7305 0.0009 31 1 1.5363 -7.4604 -0.8897 32 1 1.5355 -7.4601 0.8902 33 1 5.7110 -8.8271 2.2362 34 1 5.6829 -9.1597 0.4860 35 1 3.9615 -10.4356 2.6525 36 1 5.1516 -11.2361 1.5995 37 1 3.2370 -12.7798 1.0759 38 1 1.4864 -13.2435 -0.5884 39 1 0.5809 -11.4094 -1.9632 40 1 1.4386 -9.1227 -1.6772 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787352307.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:09 Heat of formation + Delta-G solvation = -81.750524 kcal Electronic energy + Delta-G solvation = -22235.091059 eV Core-core repulsion = 18820.275697 eV Total energy + Delta-G solvation = -3414.815362 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 1.57 seconds Orbital eigenvalues (eV) -41.54088 -40.69927 -38.56821 -36.45760 -35.85551 -34.40680 -33.77599 -32.88276 -30.56832 -29.46257 -27.95567 -25.15113 -24.74087 -24.21735 -22.49758 -21.94744 -21.00794 -19.80743 -18.26481 -18.11101 -17.54865 -17.29890 -16.80187 -16.44245 -16.39943 -16.11628 -15.51542 -15.26201 -14.90522 -14.77969 -14.56707 -14.32003 -14.08053 -13.99100 -13.62356 -13.56336 -13.09338 -12.85348 -12.75897 -12.71550 -12.46088 -12.20431 -11.89143 -11.55345 -11.43405 -11.28728 -10.80538 -10.65964 -10.29453 -9.74904 -9.58708 -9.57388 -8.27102 -6.43399 0.31933 0.41596 1.44427 1.46248 1.59455 1.85673 2.23814 2.40683 2.63463 2.81052 3.07866 3.45965 3.61789 3.72625 3.81417 3.92760 4.05662 4.15002 4.25700 4.32551 4.44224 4.57928 4.62676 4.65248 4.80066 4.90020 4.97706 5.04982 5.09940 5.16848 5.28563 5.45087 5.48910 5.50760 5.58097 5.59597 5.68712 5.86438 6.04532 6.11782 6.26068 6.68543 7.25541 7.31344 7.71788 8.85679 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033162 B = 0.002767 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.127902 B =10117.204593 C =10766.693810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.253 1.253 5 H -0.278 1.278 6 H -0.279 1.279 7 C -0.553 4.553 8 H 0.084 0.916 9 C 0.285 3.715 10 N -0.722 5.722 11 C 0.692 3.308 12 O -0.650 6.650 13 N -0.728 5.728 14 C 0.154 3.846 15 C 0.134 3.866 16 H 0.093 0.907 17 O -0.387 6.387 18 C 0.052 3.948 19 C -0.114 4.114 20 C -0.082 4.082 21 C -0.125 4.125 22 C -0.118 4.118 23 C -0.131 4.131 24 C -0.124 4.124 25 C -0.131 4.131 26 H 0.269 0.731 27 H -0.013 1.013 28 H -0.016 1.016 29 H 0.405 0.595 30 H 0.412 0.588 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.118 0.882 34 H 0.068 0.932 35 H 0.084 0.916 36 H 0.110 0.890 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.738 -26.014 -0.154 29.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.197 4.197 3 Si 0.810 3.190 4 H -0.176 1.176 5 H -0.204 1.204 6 H -0.205 1.205 7 C -0.591 4.591 8 H 0.102 0.898 9 C 0.161 3.839 10 N -0.376 5.376 11 C 0.391 3.609 12 O -0.533 6.533 13 N -0.385 5.385 14 C 0.029 3.971 15 C 0.076 3.924 16 H 0.111 0.889 17 O -0.306 6.306 18 C -0.024 4.024 19 C -0.151 4.151 20 C -0.083 4.083 21 C -0.143 4.143 22 C -0.136 4.136 23 C -0.149 4.149 24 C -0.142 4.142 25 C -0.132 4.132 26 H 0.078 0.922 27 H 0.005 0.995 28 H 0.002 0.998 29 H 0.240 0.760 30 H 0.248 0.752 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.136 0.864 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.128 0.872 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.157 0.843 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 12.471 -25.948 -0.013 28.790 hybrid contribution 0.382 0.857 -0.172 0.954 sum 12.853 -25.091 -0.185 28.192 Atomic orbital electron populations 1.70152 1.08293 1.28508 1.50078 1.26084 0.95804 1.03919 0.93901 0.85074 0.79038 0.77175 0.77672 1.17635 1.20387 1.20465 1.21630 0.94323 0.90416 1.52717 0.89801 1.18426 0.88120 0.83341 0.93970 1.45285 1.10932 1.03716 1.77631 1.16283 0.85030 0.81618 0.77937 1.90834 1.16705 1.84989 1.60744 1.44764 1.09187 1.04236 1.80308 1.21235 0.95135 0.78664 1.02051 1.20925 0.92414 0.90497 0.88585 0.88914 1.88135 1.49941 1.53193 1.39355 1.22888 0.89358 0.86919 1.03264 1.21192 0.96863 0.99394 0.97614 1.19803 0.98337 0.93184 0.96935 1.21386 0.97676 0.96162 0.99069 1.21497 0.96461 1.00174 0.95428 1.21401 1.00506 0.92574 1.00434 1.21316 0.96476 0.98120 0.98267 1.20064 0.99185 0.95146 0.98831 0.92238 0.99504 0.99782 0.75974 0.75201 0.90173 0.93276 0.86410 0.91389 0.89790 0.87171 0.83610 0.83537 0.84251 0.85595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.21 13.29 21.45 0.28 -56.92 16 2 C 0.00 0.13 5.46 84.65 0.46 0.59 16 3 Si 0.99 42.96 29.54 68.60 2.03 44.98 16 4 H -0.25 -10.14 7.11 99.48 0.71 -9.44 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 6 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.55 -30.81 9.28 25.60 0.24 -30.57 16 8 H 0.08 4.22 7.60 -2.91 -0.02 4.20 16 9 C 0.28 16.29 5.43 85.63 0.46 16.75 16 10 N -0.72 -32.63 5.55 -482.30 -2.68 -35.31 16 11 C 0.69 30.65 8.57 179.05 1.53 32.18 16 12 O -0.65 -35.26 16.34 -3.99 -0.07 -35.33 16 13 N -0.73 -23.28 5.50 -478.55 -2.63 -25.91 16 14 C 0.15 4.43 5.03 86.38 0.43 4.87 16 15 C 0.13 2.91 2.76 29.83 0.08 2.99 16 16 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 17 O -0.39 -8.54 10.37 -148.98 -1.55 -10.09 16 18 C 0.05 0.73 6.84 71.97 0.49 1.22 16 19 C -0.11 -1.48 6.00 29.85 0.18 -1.31 16 20 C -0.08 -1.46 5.78 -19.84 -0.11 -1.58 16 21 C -0.13 -1.85 9.67 22.32 0.22 -1.63 16 22 C -0.12 -1.72 10.05 22.23 0.22 -1.50 16 23 C -0.13 -2.24 10.05 22.23 0.22 -2.02 16 24 C -0.12 -2.52 9.07 22.32 0.20 -2.32 16 25 C -0.13 -2.74 5.46 -19.86 -0.11 -2.85 16 26 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 27 H -0.01 -0.83 8.14 -2.39 -0.02 -0.85 16 28 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 29 H 0.40 15.12 8.34 -92.70 -0.77 14.34 16 30 H 0.41 10.44 8.48 -92.71 -0.79 9.65 16 31 H 0.08 2.31 6.29 -2.39 -0.02 2.30 16 32 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 33 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.07 0.80 8.08 -2.39 -0.02 0.78 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.15 1.37 8.06 -2.91 -0.02 1.35 16 38 H 0.15 1.35 8.06 -2.91 -0.02 1.33 16 39 H 0.14 1.84 8.06 -2.91 -0.02 1.82 16 40 H 0.13 2.52 6.45 -2.91 -0.02 2.50 16 Total: -1.00 -77.53 336.08 -0.57 -78.10 By element: Atomic # 1 Polarization: 26.13 SS G_CDS: -0.49 Total: 25.64 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 4.53 Total: 14.83 kcal Atomic # 7 Polarization: -113.11 SS G_CDS: -5.03 Total: -118.14 kcal Atomic # 8 Polarization: -43.80 SS G_CDS: -1.61 Total: -45.42 kcal Atomic # 14 Polarization: 42.96 SS G_CDS: 2.03 Total: 44.98 kcal Total: -77.53 -0.57 -78.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787352307.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.646 kcal (2) G-P(sol) polarization free energy of solvation -77.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.105 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.57 seconds