Wall clock time and date at job start Tue Mar 31 2020 06:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 119.99943 * 2 1 4 4 H 1.48496 * 109.47159 * 239.99892 * 3 2 1 5 5 H 1.48494 * 109.47186 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.46945 * 119.99910 * 3 2 1 7 7 C 1.37877 * 120.00556 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00749 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99343 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.46942 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00110 * 179.97438 * 10 9 7 12 12 O 1.21588 * 120.00105 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00557 * 180.02562 * 11 10 9 14 14 C 1.46494 * 120.00791 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47461 * 180.02562 * 14 13 11 16 16 H 1.08996 * 109.33913 * 60.31938 * 15 14 13 17 17 O 1.42723 * 109.34014 * 300.79281 * 15 14 13 18 18 C 1.43208 * 113.13335 * 187.93258 * 17 15 14 19 19 C 1.52973 * 108.49462 * 70.65285 * 18 17 15 20 20 C 1.50745 * 109.76913 * 310.81608 * 19 18 17 21 21 C 1.38589 * 118.76690 * 196.76600 * 20 19 18 22 22 C 1.38076 * 120.27483 * 180.48653 * 21 20 19 23 23 C 1.38259 * 119.86225 * 0.29417 * 22 21 20 24 24 C 1.38056 * 119.89446 * 359.35152 * 23 22 21 25 25 C 1.37909 * 121.34780 * 17.09048 * 20 19 18 26 26 H 0.97002 * 119.99868 * 0.02562 * 1 2 3 27 27 H 1.08999 * 109.46821 * 60.00763 * 9 7 2 28 28 H 1.08997 * 109.47306 * 300.00452 * 9 7 2 29 29 H 0.97002 * 120.00359 * 0.02562 * 10 9 7 30 30 H 0.97007 * 119.99407 * 0.02562 * 13 11 10 31 31 H 1.08999 * 109.47384 * 59.99819 * 14 13 11 32 32 H 1.09008 * 109.46816 * 300.00429 * 14 13 11 33 33 H 1.08997 * 109.63443 * 190.35596 * 18 17 15 34 34 H 1.09003 * 109.63285 * 310.95009 * 18 17 15 35 35 H 1.08997 * 109.41929 * 190.72623 * 19 18 17 36 36 H 1.08998 * 109.42313 * 70.91036 * 19 18 17 37 37 H 1.07997 * 119.86686 * 0.52157 * 21 20 19 38 38 H 1.08002 * 120.06555 * 180.02562 * 22 21 20 39 39 H 1.07996 * 120.04965 * 179.61014 * 23 22 21 40 40 H 1.08001 * 119.85050 * 180.26564 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6964 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2030 -3.6126 -0.0018 11 6 1.7538 -4.8833 -0.0015 12 8 0.5584 -5.1055 -0.0006 13 7 2.6296 -5.9077 -0.0021 14 6 2.1414 -7.2889 -0.0023 15 6 3.3314 -8.2506 -0.0024 16 1 3.9322 -8.0815 0.8912 17 8 4.1324 -8.0113 -1.1591 18 6 5.1683 -8.9839 -1.3372 19 6 4.5241 -10.3094 -1.7475 20 6 3.3873 -10.6347 -0.8124 21 6 2.9007 -11.9319 -0.7801 22 6 1.8537 -12.2620 0.0574 23 6 1.2843 -11.2929 0.8625 24 6 1.7732 -10.0021 0.8362 25 6 2.8259 -9.6699 -0.0026 26 1 -0.4850 0.8401 -0.0004 27 1 0.6242 -2.5566 -0.8904 28 1 0.6247 -2.5570 0.8896 29 1 3.1567 -3.4354 -0.0021 30 1 3.5833 -5.7304 -0.0024 31 1 1.5355 -7.4600 -0.8921 32 1 1.5360 -7.4604 0.8879 33 1 5.8521 -8.6519 -2.1183 34 1 5.7122 -9.1151 -0.4018 35 1 5.2691 -11.1037 -1.7023 36 1 4.1439 -10.2277 -2.7657 37 1 3.3426 -12.6880 -1.4120 38 1 1.4774 -13.2741 0.0802 39 1 0.4611 -11.5463 1.5140 40 1 1.3307 -9.2467 1.4686 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787352308.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:14 Heat of formation + Delta-G solvation = -81.834909 kcal Electronic energy + Delta-G solvation = -22245.566466 eV Core-core repulsion = 18830.747445 eV Total energy + Delta-G solvation = -3414.819021 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.53867 -40.69595 -38.57115 -36.44696 -35.84624 -34.40461 -33.77041 -32.88818 -30.56455 -29.45899 -27.96230 -25.14882 -24.73595 -24.20916 -22.49532 -21.92938 -21.01178 -19.80883 -18.24530 -18.10499 -17.52027 -17.32132 -16.80580 -16.44575 -16.38618 -16.13144 -15.51575 -15.26605 -14.90251 -14.79671 -14.55851 -14.31465 -14.07022 -13.97642 -13.65761 -13.52775 -13.09214 -12.89842 -12.73999 -12.65788 -12.45743 -12.21769 -11.89278 -11.55345 -11.48445 -11.28377 -10.78049 -10.65881 -10.28830 -9.74851 -9.58474 -9.57258 -8.26612 -6.43215 0.32078 0.41683 1.44341 1.49280 1.57134 1.85591 2.24073 2.40994 2.63259 2.81796 3.08087 3.46365 3.61802 3.72758 3.81919 3.92903 4.05321 4.15712 4.25604 4.32859 4.45005 4.57753 4.62913 4.65860 4.79516 4.90028 4.97854 5.05008 5.09832 5.16963 5.28701 5.45309 5.49024 5.50544 5.58144 5.59821 5.68987 5.86472 6.04632 6.11627 6.26746 6.68210 7.25663 7.31740 7.72068 8.85691 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.033219 B = 0.002777 C = 0.002604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 842.682436 B =10081.760007 C =10749.822541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.262 1.262 5 H -0.285 1.285 6 H -0.261 1.261 7 C -0.556 4.556 8 H 0.084 0.916 9 C 0.285 3.715 10 N -0.722 5.722 11 C 0.692 3.308 12 O -0.650 6.650 13 N -0.727 5.727 14 C 0.155 3.845 15 C 0.134 3.866 16 H 0.093 0.907 17 O -0.387 6.387 18 C 0.052 3.948 19 C -0.114 4.114 20 C -0.083 4.083 21 C -0.125 4.125 22 C -0.118 4.118 23 C -0.131 4.131 24 C -0.124 4.124 25 C -0.131 4.131 26 H 0.269 0.731 27 H -0.016 1.016 28 H -0.013 1.013 29 H 0.405 0.595 30 H 0.412 0.588 31 H 0.048 0.952 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.083 0.917 37 H 0.146 0.854 38 H 0.147 0.853 39 H 0.140 0.860 40 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.758 -25.939 -0.289 29.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.187 1.187 5 H -0.211 1.211 6 H -0.186 1.186 7 C -0.593 4.593 8 H 0.102 0.898 9 C 0.162 3.838 10 N -0.376 5.376 11 C 0.391 3.609 12 O -0.533 6.533 13 N -0.384 5.384 14 C 0.030 3.970 15 C 0.076 3.924 16 H 0.110 0.890 17 O -0.306 6.306 18 C -0.024 4.024 19 C -0.151 4.151 20 C -0.083 4.083 21 C -0.143 4.143 22 C -0.136 4.136 23 C -0.149 4.149 24 C -0.142 4.142 25 C -0.132 4.132 26 H 0.078 0.922 27 H 0.002 0.998 28 H 0.005 0.995 29 H 0.240 0.760 30 H 0.248 0.752 31 H 0.067 0.933 32 H 0.098 0.902 33 H 0.136 0.864 34 H 0.086 0.914 35 H 0.128 0.872 36 H 0.102 0.898 37 H 0.164 0.836 38 H 0.165 0.835 39 H 0.158 0.842 40 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 12.491 -25.859 -0.419 28.721 hybrid contribution 0.390 0.816 0.156 0.918 sum 12.881 -25.042 -0.263 28.162 Atomic orbital electron populations 1.70140 1.08300 1.28640 1.49920 1.26082 0.95798 1.03909 0.93853 0.85176 0.77871 0.76458 0.79497 1.18685 1.21056 1.18585 1.21577 0.94325 0.90451 1.52992 0.89803 1.18415 0.88104 0.83313 0.93950 1.45283 1.10930 1.03727 1.77638 1.16285 0.85032 0.81624 0.77945 1.90833 1.16698 1.84991 1.60774 1.44735 1.09215 1.04213 1.80255 1.21228 0.95084 0.78701 1.01983 1.20933 0.91367 0.90102 0.90019 0.88962 1.88118 1.45969 1.51070 1.45448 1.22894 0.89210 0.87600 1.02671 1.21191 0.96174 0.99324 0.98388 1.19800 0.98152 0.93486 0.96839 1.21384 0.97478 0.95754 0.99698 1.21498 0.96014 1.00426 0.95644 1.21403 1.00565 0.92877 1.00076 1.21315 0.96118 0.97745 0.98983 1.20067 0.98568 0.95322 0.99260 0.92223 0.99794 0.99525 0.75984 0.75172 0.93335 0.90198 0.86368 0.91403 0.87184 0.89828 0.83631 0.83549 0.84243 0.85570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.28 13.29 21.45 0.28 -56.99 16 2 C 0.00 0.17 5.46 84.66 0.46 0.64 16 3 Si 0.99 42.94 29.54 68.60 2.03 44.97 16 4 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 5 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 6 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 7 C -0.56 -31.02 9.28 25.60 0.24 -30.78 16 8 H 0.08 4.21 7.60 -2.91 -0.02 4.19 16 9 C 0.29 16.37 5.43 85.63 0.46 16.83 16 10 N -0.72 -32.74 5.55 -482.30 -2.68 -35.42 16 11 C 0.69 30.72 8.57 179.06 1.53 32.26 16 12 O -0.65 -35.30 16.34 -3.99 -0.07 -35.37 16 13 N -0.73 -23.37 5.44 -478.54 -2.60 -25.97 16 14 C 0.15 4.45 4.93 86.38 0.43 4.88 16 15 C 0.13 2.90 2.82 29.84 0.08 2.98 16 16 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 17 O -0.39 -8.48 10.14 -148.98 -1.51 -9.99 16 18 C 0.05 0.73 6.85 71.97 0.49 1.23 16 19 C -0.11 -1.49 6.00 29.85 0.18 -1.31 16 20 C -0.08 -1.47 5.78 -19.84 -0.11 -1.58 16 21 C -0.13 -1.86 9.67 22.32 0.22 -1.64 16 22 C -0.12 -1.73 10.05 22.24 0.22 -1.50 16 23 C -0.13 -2.24 10.05 22.23 0.22 -2.02 16 24 C -0.12 -2.51 9.10 22.32 0.20 -2.31 16 25 C -0.13 -2.74 5.47 -19.86 -0.11 -2.85 16 26 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 27 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 28 H -0.01 -0.85 8.14 -2.39 -0.02 -0.86 16 29 H 0.40 15.18 8.34 -92.71 -0.77 14.41 16 30 H 0.41 10.60 8.33 -92.70 -0.77 9.83 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 2.29 6.54 -2.38 -0.02 2.27 16 33 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.07 0.79 8.07 -2.39 -0.02 0.77 16 35 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 38 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 39 H 0.14 1.84 8.06 -2.91 -0.02 1.81 16 40 H 0.13 2.50 6.52 -2.91 -0.02 2.48 16 Total: -1.00 -77.47 335.93 -0.50 -77.97 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: -0.48 Total: 26.00 kcal Atomic # 6 Polarization: 10.30 SS G_CDS: 4.52 Total: 14.82 kcal Atomic # 7 Polarization: -113.39 SS G_CDS: -5.00 Total: -118.39 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -1.58 Total: -45.36 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -77.47 -0.50 -77.97 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787352308.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.869 kcal (2) G-P(sol) polarization free energy of solvation -77.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.835 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds