Wall clock time and date at job start Tue Mar 31 2020 06:53:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99858 * 2 1 4 4 H 1.48508 * 109.47009 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47248 * 300.00373 * 3 2 1 6 6 H 1.48497 * 109.47006 * 60.00929 * 3 2 1 7 7 C 1.37881 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99974 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99816 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47263 * 180.02562 * 9 7 2 11 11 C 1.34770 * 120.00339 * 180.02562 * 10 9 7 12 12 O 1.21586 * 120.00005 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00296 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00016 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.68344 * 325.52127 * 14 13 11 16 16 C 1.53328 * 109.68317 * 204.99424 * 14 13 11 17 17 C 1.52736 * 108.36575 * 170.29749 * 16 14 13 18 18 C 1.50640 * 110.59014 * 51.07943 * 17 16 14 19 19 C 1.38838 * 117.69045 * 162.51373 * 18 17 16 20 20 C 1.38429 * 120.50350 * 179.79856 * 19 18 17 21 21 O 1.35895 * 120.17419 * 179.97438 * 20 19 18 22 22 C 1.38755 * 119.64961 * 359.96550 * 20 19 18 23 23 C 1.37832 * 119.71668 * 0.10655 * 22 20 19 24 24 C 1.37708 * 122.57010 * 342.45664 * 18 17 16 25 25 C 1.50652 * 122.54307 * 0.36588 * 24 18 17 26 26 H 0.97002 * 120.00078 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46546 * 60.00288 * 9 7 2 28 28 H 1.08997 * 109.47325 * 300.00439 * 9 7 2 29 29 H 0.97003 * 119.99653 * 0.02562 * 10 9 7 30 30 H 0.97000 * 119.99652 * 359.97438 * 13 11 10 31 31 H 1.09000 * 109.68321 * 50.57992 * 16 14 13 32 32 H 1.08993 * 109.72111 * 290.03706 * 16 14 13 33 33 H 1.08999 * 109.25375 * 171.37129 * 17 16 14 34 34 H 1.08997 * 109.25103 * 290.79324 * 17 16 14 35 35 H 1.07997 * 119.74634 * 359.77702 * 19 18 17 36 36 H 0.96703 * 113.99682 * 270.02495 * 21 20 19 37 37 H 1.07994 * 120.14592 * 180.12612 * 22 20 19 38 38 H 1.07996 * 119.68822 * 179.97438 * 23 22 20 39 39 H 1.08994 * 109.25429 * 222.16185 * 25 24 18 40 40 H 1.09004 * 109.21577 * 102.72344 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5585 -5.1056 -0.0020 13 7 2.6297 -5.9077 -0.0005 14 6 2.1414 -7.2890 -0.0017 15 1 1.2207 -7.3533 0.5783 16 6 3.2022 -8.2123 0.6091 17 6 2.5781 -9.5907 0.8173 18 6 1.9163 -10.0693 -0.4484 19 6 1.6309 -11.4239 -0.5548 20 6 1.0196 -11.9260 -1.6908 21 8 0.7438 -13.2531 -1.7881 22 6 0.6898 -11.0671 -2.7295 23 6 0.9757 -9.7231 -2.6216 24 6 1.5914 -9.2195 -1.4821 25 6 1.8781 -7.7412 -1.4365 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 3.1567 -3.4354 -0.0002 30 1 3.5833 -5.7304 -0.0002 31 1 3.5316 -7.8098 1.5670 32 1 4.0531 -8.2929 -0.0673 33 1 3.3561 -10.2976 1.1057 34 1 1.8343 -9.5321 1.6119 35 1 1.8882 -12.0909 0.2547 36 1 1.4566 -13.7751 -2.1814 37 1 0.2109 -11.4500 -3.6185 38 1 0.7192 -9.0551 -3.4305 39 1 1.0216 -7.1965 -1.8337 40 1 2.7550 -7.5268 -2.0476 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787370904.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:20 Heat of formation + Delta-G solvation = -67.078408 kcal Electronic energy + Delta-G solvation = -22123.276092 eV Core-core repulsion = 18709.096961 eV Total energy + Delta-G solvation = -3414.179131 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.53930 -39.25700 -37.88364 -35.72524 -34.08553 -33.34569 -32.39659 -31.69310 -29.72740 -28.17882 -26.74480 -23.94725 -23.00790 -22.45581 -22.04676 -20.12288 -19.96702 -18.28942 -17.80631 -16.60972 -16.04847 -15.96047 -15.82720 -15.23228 -14.68155 -14.51045 -14.41835 -14.14110 -13.78047 -13.51975 -13.19763 -13.10444 -12.87832 -12.48412 -12.33276 -11.95812 -11.87329 -11.40602 -11.33565 -11.13131 -10.94198 -10.89981 -10.81388 -10.50543 -10.29275 -9.38175 -9.33839 -8.96735 -8.78238 -8.69078 -8.51708 -7.74979 -6.14443 -4.20843 1.05289 1.13628 3.24515 3.28871 3.33035 3.37672 3.39249 3.93699 3.97419 4.33342 4.46906 4.58454 4.72969 4.83693 4.91538 5.02459 5.05926 5.14962 5.21740 5.35689 5.40149 5.44789 5.56667 5.67425 5.76014 5.77322 5.85639 6.11451 6.14766 6.21340 6.23325 6.47483 6.67014 6.90768 7.14633 7.40858 7.53544 7.57273 7.58877 7.92733 8.06152 8.78330 8.96676 9.35409 9.49923 10.95855 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.041183 B = 0.002615 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.722799 B =10703.032197 C =11055.504201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.541 4.541 8 H 0.063 0.937 9 C 0.267 3.733 10 N -0.730 5.730 11 C 0.692 3.308 12 O -0.600 6.600 13 N -0.753 5.753 14 C 0.168 3.832 15 H 0.091 0.909 16 C -0.127 4.127 17 C -0.076 4.076 18 C -0.063 4.063 19 C -0.145 4.145 20 C 0.095 3.905 21 O -0.501 6.501 22 C -0.146 4.146 23 C -0.101 4.101 24 C -0.071 4.071 25 C -0.095 4.095 26 H 0.265 0.735 27 H 0.024 0.976 28 H 0.024 0.976 29 H 0.386 0.614 30 H 0.391 0.609 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.126 0.874 36 H 0.387 0.613 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.085 0.915 40 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.050 -23.379 -2.616 25.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.579 4.579 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.382 5.382 11 C 0.392 3.608 12 O -0.479 6.479 13 N -0.409 5.409 14 C 0.062 3.938 15 H 0.109 0.891 16 C -0.165 4.165 17 C -0.114 4.114 18 C -0.063 4.063 19 C -0.164 4.164 20 C 0.051 3.949 21 O -0.310 6.310 22 C -0.165 4.165 23 C -0.120 4.120 24 C -0.071 4.071 25 C -0.133 4.133 26 H 0.075 0.925 27 H 0.042 0.958 28 H 0.042 0.958 29 H 0.218 0.782 30 H 0.224 0.776 31 H 0.096 0.904 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.144 0.856 36 H 0.242 0.758 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.103 0.897 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.198 -23.226 -2.348 24.429 hybrid contribution 1.631 0.860 -0.354 1.877 sum 8.829 -22.366 -2.701 24.197 Atomic orbital electron populations 1.69989 1.06086 1.27138 1.49070 1.24953 0.94912 0.99413 0.94818 0.86364 0.79789 0.83019 0.77726 1.19683 1.20827 1.20820 1.21266 0.93283 0.90445 1.52923 0.91918 1.18975 0.87794 0.81103 0.97587 1.45724 1.10758 1.04463 1.77238 1.16181 0.85271 0.81078 0.78264 1.90875 1.14225 1.84178 1.58583 1.45208 1.08751 1.04797 1.82184 1.20587 0.97993 0.79877 0.95361 0.89127 1.21846 0.98218 0.94537 1.01877 1.20434 0.99729 0.96451 0.94752 1.19512 0.98701 0.92390 0.95739 1.21371 1.00895 0.95547 0.98549 1.18338 0.98800 0.83716 0.94009 1.84839 1.45047 1.16230 1.84915 1.21326 1.02280 0.93923 0.98946 1.21100 0.98156 0.94871 0.97831 1.19668 0.98336 0.95452 0.93669 1.20958 1.03062 0.90826 0.98481 0.92526 0.95763 0.95778 0.78195 0.77567 0.90427 0.91088 0.90252 0.89985 0.85614 0.75780 0.85552 0.85505 0.89655 0.90366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 7 C -0.54 -14.73 9.28 -34.44 -0.32 -15.05 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.27 7.16 5.43 -5.19 -0.03 7.13 16 10 N -0.73 -15.53 5.55 -66.42 -0.37 -15.90 16 11 C 0.69 14.12 8.54 -86.92 -0.74 13.37 16 12 O -0.60 -14.92 16.00 5.29 0.08 -14.83 16 13 N -0.75 -10.86 5.09 -58.65 -0.30 -11.16 16 14 C 0.17 2.16 2.48 -67.90 -0.17 1.99 16 15 H 0.09 1.41 7.53 -51.93 -0.39 1.02 16 16 C -0.13 -1.15 5.46 -26.70 -0.15 -1.30 16 17 C -0.08 -0.66 5.67 -28.05 -0.16 -0.81 16 18 C -0.06 -0.66 5.74 -104.62 -0.60 -1.26 16 19 C -0.15 -1.44 9.55 -39.29 -0.38 -1.81 16 20 C 0.10 0.97 6.70 -39.32 -0.26 0.71 16 21 O -0.50 -4.45 13.51 -19.41 -0.26 -4.71 16 22 C -0.15 -1.49 9.99 -39.54 -0.40 -1.89 16 23 C -0.10 -1.10 9.60 -39.46 -0.38 -1.48 16 24 C -0.07 -0.81 5.74 -104.57 -0.60 -1.41 16 25 C -0.09 -1.18 5.26 -28.04 -0.15 -1.33 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.02 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.39 6.97 8.34 -40.82 -0.34 6.63 16 30 H 0.39 4.41 8.63 -40.82 -0.35 4.05 16 31 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 33 H 0.08 0.53 8.12 -51.93 -0.42 0.11 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.13 1.03 8.05 -52.49 -0.42 0.61 16 36 H 0.39 1.48 9.06 45.56 0.41 1.89 16 37 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 38 H 0.13 1.23 8.05 -52.49 -0.42 0.81 16 39 H 0.08 1.27 8.12 -51.93 -0.42 0.85 16 40 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 337.88 15.07 5.09 5.09 Total: -1.00 -34.63 337.88 -9.31 -43.94 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -4.85 Total: 8.71 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -4.42 Total: -1.50 kcal Atomic # 7 Polarization: -52.65 SS G_CDS: 0.07 Total: -52.58 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: -0.18 Total: -19.55 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -34.63 -9.31 -43.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787370904.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.135 kcal (2) G-P(sol) polarization free energy of solvation -34.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds