Wall clock time and date at job start Tue Mar 31 2020 06:53:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86804 * 119.99858 * 2 1 4 4 H 1.48508 * 109.47009 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47248 * 300.00373 * 3 2 1 6 6 H 1.48497 * 109.47006 * 60.00929 * 3 2 1 7 7 C 1.37881 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99974 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99816 * 359.97438 * 7 2 1 10 10 N 1.46497 * 109.47263 * 180.02562 * 9 7 2 11 11 C 1.34770 * 120.00339 * 180.02562 * 10 9 7 12 12 O 1.21586 * 120.00005 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00296 * 180.02562 * 11 10 9 14 14 C 1.46500 * 120.00016 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.68344 * 325.52127 * 14 13 11 16 16 C 1.53328 * 109.68317 * 204.99424 * 14 13 11 17 17 C 1.52736 * 108.36575 * 170.29749 * 16 14 13 18 18 C 1.50640 * 110.59014 * 51.07943 * 17 16 14 19 19 C 1.38838 * 117.69045 * 162.51373 * 18 17 16 20 20 C 1.38429 * 120.50350 * 179.79856 * 19 18 17 21 21 O 1.35895 * 120.17419 * 179.97438 * 20 19 18 22 22 C 1.38755 * 119.64961 * 359.96550 * 20 19 18 23 23 C 1.37832 * 119.71668 * 0.10655 * 22 20 19 24 24 C 1.37708 * 122.57010 * 342.45664 * 18 17 16 25 25 C 1.50652 * 122.54307 * 0.36588 * 24 18 17 26 26 H 0.97002 * 120.00078 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.46546 * 60.00288 * 9 7 2 28 28 H 1.08997 * 109.47325 * 300.00439 * 9 7 2 29 29 H 0.97003 * 119.99653 * 0.02562 * 10 9 7 30 30 H 0.97000 * 119.99652 * 359.97438 * 13 11 10 31 31 H 1.09000 * 109.68321 * 50.57992 * 16 14 13 32 32 H 1.08993 * 109.72111 * 290.03706 * 16 14 13 33 33 H 1.08999 * 109.25375 * 171.37129 * 17 16 14 34 34 H 1.08997 * 109.25103 * 290.79324 * 17 16 14 35 35 H 1.07997 * 119.74634 * 359.77702 * 19 18 17 36 36 H 0.96703 * 113.99682 * 270.02495 * 21 20 19 37 37 H 1.07994 * 120.14592 * 180.12612 * 22 20 19 38 38 H 1.07996 * 119.68822 * 179.97438 * 23 22 20 39 39 H 1.08994 * 109.25429 * 222.16185 * 25 24 18 40 40 H 1.09004 * 109.21577 * 102.72344 * 25 24 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7092 1.3464 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8905 2.3963 1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 7 2.2030 -3.6127 -0.0005 11 6 1.7539 -4.8833 -0.0011 12 8 0.5585 -5.1056 -0.0020 13 7 2.6297 -5.9077 -0.0005 14 6 2.1414 -7.2890 -0.0017 15 1 1.2207 -7.3533 0.5783 16 6 3.2022 -8.2123 0.6091 17 6 2.5781 -9.5907 0.8173 18 6 1.9163 -10.0693 -0.4484 19 6 1.6309 -11.4239 -0.5548 20 6 1.0196 -11.9260 -1.6908 21 8 0.7438 -13.2531 -1.7881 22 6 0.6898 -11.0671 -2.7295 23 6 0.9757 -9.7231 -2.6216 24 6 1.5914 -9.2195 -1.4821 25 6 1.8781 -7.7412 -1.4365 26 1 -0.4850 0.8401 0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5571 0.8896 29 1 3.1567 -3.4354 -0.0002 30 1 3.5833 -5.7304 -0.0002 31 1 3.5316 -7.8098 1.5670 32 1 4.0531 -8.2929 -0.0673 33 1 3.3561 -10.2976 1.1057 34 1 1.8343 -9.5321 1.6119 35 1 1.8882 -12.0909 0.2547 36 1 1.4566 -13.7751 -2.1814 37 1 0.2109 -11.4500 -3.6185 38 1 0.7192 -9.0551 -3.4305 39 1 1.0216 -7.1965 -1.8337 40 1 2.7550 -7.5268 -2.0476 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000787370904.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:53:18 Heat of formation + Delta-G solvation = -93.430060 kcal Electronic energy + Delta-G solvation = -22124.418785 eV Core-core repulsion = 18709.096961 eV Total energy + Delta-G solvation = -3415.321824 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.48454 -40.65993 -38.80087 -36.78902 -36.00233 -34.57622 -34.12763 -32.81861 -30.57621 -29.52630 -28.36126 -25.09877 -24.44311 -23.34851 -23.21667 -21.77209 -20.90538 -19.75148 -18.78159 -17.98134 -17.67588 -16.95577 -16.87369 -16.54135 -16.16039 -16.01804 -15.43959 -15.29081 -14.95231 -14.61973 -14.51044 -14.20576 -14.02946 -13.99026 -13.65633 -13.25279 -13.10263 -12.85481 -12.75061 -12.27037 -12.21100 -12.18593 -11.94840 -11.79053 -11.43261 -11.27370 -11.17172 -10.80701 -10.24163 -9.73527 -9.59408 -9.32776 -8.27602 -6.43907 0.26200 0.35735 1.44137 1.45768 1.58917 1.89385 2.27185 2.40307 2.62347 3.07514 3.27520 3.50841 3.67407 3.78835 3.92857 4.02597 4.12900 4.19202 4.27131 4.48003 4.59973 4.62356 4.79764 4.88141 4.89384 5.02477 5.06238 5.11421 5.21180 5.28186 5.29166 5.38136 5.45735 5.51056 5.62463 5.66823 5.71170 5.86750 5.92283 6.31216 6.68629 6.87937 7.25783 7.36157 7.76613 8.85056 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.041183 B = 0.002615 C = 0.002532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.722799 B =10703.032197 C =11055.504201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.987 3.013 4 H -0.252 1.252 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.552 4.552 8 H 0.085 0.915 9 C 0.285 3.715 10 N -0.723 5.723 11 C 0.691 3.309 12 O -0.649 6.649 13 N -0.726 5.726 14 C 0.164 3.836 15 H 0.058 0.942 16 C -0.115 4.115 17 C -0.075 4.075 18 C -0.066 4.066 19 C -0.149 4.149 20 C 0.096 3.904 21 O -0.510 6.510 22 C -0.155 4.155 23 C -0.113 4.113 24 C -0.091 4.091 25 C -0.086 4.086 26 H 0.268 0.732 27 H -0.016 1.016 28 H -0.016 1.016 29 H 0.405 0.595 30 H 0.412 0.588 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.110 0.890 34 H 0.080 0.920 35 H 0.146 0.854 36 H 0.410 0.590 37 H 0.139 0.861 38 H 0.128 0.872 39 H 0.048 0.952 40 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.143 -24.395 -2.226 27.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.810 3.190 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.590 4.590 8 H 0.103 0.897 9 C 0.162 3.838 10 N -0.377 5.377 11 C 0.390 3.610 12 O -0.532 6.532 13 N -0.382 5.382 14 C 0.058 3.942 15 H 0.077 0.923 16 C -0.152 4.152 17 C -0.112 4.112 18 C -0.066 4.066 19 C -0.168 4.168 20 C 0.051 3.949 21 O -0.323 6.323 22 C -0.174 4.174 23 C -0.131 4.131 24 C -0.092 4.092 25 C -0.125 4.125 26 H 0.077 0.923 27 H 0.002 0.998 28 H 0.002 0.998 29 H 0.241 0.759 30 H 0.249 0.751 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.128 0.872 34 H 0.098 0.902 35 H 0.164 0.836 36 H 0.269 0.731 37 H 0.157 0.843 38 H 0.146 0.854 39 H 0.067 0.933 40 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 10.391 -24.312 -1.966 26.512 hybrid contribution 0.611 1.013 -0.503 1.285 sum 11.002 -23.299 -2.469 25.884 Atomic orbital electron populations 1.70154 1.08317 1.28479 1.50113 1.26088 0.95787 1.03947 0.93945 0.85084 0.79087 0.77222 0.77629 1.17540 1.20520 1.20484 1.21636 0.94335 0.90411 1.52631 0.89723 1.18392 0.88136 0.83457 0.93829 1.45292 1.10878 1.03822 1.77713 1.16358 0.85192 0.81646 0.77756 1.90845 1.16885 1.84913 1.60563 1.44954 1.09024 1.04151 1.80113 1.20763 0.98411 0.79341 0.95666 0.92334 1.21808 0.97219 0.93641 1.02574 1.20508 1.00427 0.96570 0.93706 1.19737 0.98425 0.92578 0.95903 1.21589 1.00642 0.95547 0.98999 1.18474 0.98090 0.84325 0.93977 1.84779 1.46531 1.15739 1.85239 1.21500 1.02476 0.93641 0.99762 1.21222 0.98429 0.95494 0.97987 1.19657 0.99957 0.94799 0.94764 1.20794 1.02074 0.91542 0.98060 0.92276 0.99820 0.99806 0.75943 0.75077 0.89095 0.89052 0.87213 0.90158 0.83619 0.73137 0.84307 0.85380 0.93281 0.89086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.82 13.29 21.45 0.28 -56.53 16 2 C 0.00 0.09 5.46 84.66 0.46 0.56 16 3 Si 0.99 42.44 29.54 68.60 2.03 44.46 16 4 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 7 C -0.55 -30.24 9.28 25.60 0.24 -30.00 16 8 H 0.08 4.17 7.60 -2.91 -0.02 4.14 16 9 C 0.29 16.01 5.43 85.63 0.46 16.47 16 10 N -0.72 -31.29 5.55 -482.31 -2.68 -33.97 16 11 C 0.69 28.93 8.54 179.06 1.53 30.46 16 12 O -0.65 -34.20 16.00 -3.99 -0.06 -34.26 16 13 N -0.73 -20.49 5.09 -457.72 -2.33 -22.83 16 14 C 0.16 4.16 2.48 45.01 0.11 4.27 16 15 H 0.06 1.90 7.53 -2.39 -0.02 1.88 16 16 C -0.11 -1.78 5.46 30.62 0.17 -1.61 16 17 C -0.07 -1.09 5.67 29.74 0.17 -0.92 16 18 C -0.07 -1.28 5.74 -19.86 -0.11 -1.39 16 19 C -0.15 -2.64 9.55 22.46 0.21 -2.43 16 20 C 0.10 1.80 6.70 22.44 0.15 1.95 16 21 O -0.51 -7.97 13.51 -92.37 -1.25 -9.22 16 22 C -0.16 -3.06 9.99 22.30 0.22 -2.84 16 23 C -0.11 -2.49 9.60 22.35 0.21 -2.27 16 24 C -0.09 -2.08 5.74 -19.83 -0.11 -2.19 16 25 C -0.09 -2.18 5.26 29.74 0.16 -2.03 16 26 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 27 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 28 H -0.02 -1.01 8.14 -2.39 -0.02 -1.03 16 29 H 0.41 14.22 8.34 -92.71 -0.77 13.44 16 30 H 0.41 8.35 8.63 -92.71 -0.80 7.55 16 31 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.09 1.11 8.10 -2.39 -0.02 1.09 16 33 H 0.11 0.99 8.12 -2.39 -0.02 0.98 16 34 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.15 1.93 8.05 -2.91 -0.02 1.91 16 36 H 0.41 2.12 9.06 -74.06 -0.67 1.45 16 37 H 0.14 2.27 8.06 -2.91 -0.02 2.24 16 38 H 0.13 2.63 8.05 -2.91 -0.02 2.60 16 39 H 0.05 1.58 8.12 -2.39 -0.02 1.56 16 40 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 Total: -1.00 -78.87 337.88 -1.30 -80.16 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: -1.16 Total: 24.15 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 3.87 Total: 8.03 kcal Atomic # 7 Polarization: -108.61 SS G_CDS: -4.72 Total: -113.33 kcal Atomic # 8 Polarization: -42.17 SS G_CDS: -1.31 Total: -43.48 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Total: -78.87 -1.30 -80.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787370904.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.266 kcal (2) G-P(sol) polarization free energy of solvation -78.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds