Wall clock time and date at job start Tue Mar 31 2020 06:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99564 * 2 1 4 4 H 1.48503 * 109.47285 * 270.00138 * 3 2 1 5 5 H 1.48507 * 109.47075 * 30.00081 * 3 2 1 6 6 H 1.48498 * 109.47231 * 150.00372 * 3 2 1 7 7 C 1.37872 * 120.00370 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99903 * 359.97438 * 7 2 1 9 9 C 1.50698 * 120.00007 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47467 * 179.97438 * 9 7 2 11 11 C 1.34773 * 120.00431 * 180.02562 * 10 9 7 12 12 O 1.21593 * 119.99894 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00097 * 179.72742 * 11 10 9 14 14 C 1.46504 * 119.99854 * 180.27545 * 13 11 10 15 15 C 1.53004 * 109.46928 * 179.97438 * 14 13 11 16 16 O 1.42903 * 110.26493 * 299.37425 * 15 14 13 17 17 C 1.54338 * 110.30100 * 177.19868 * 15 14 13 18 18 C 1.54342 * 102.39473 * 267.41918 * 17 15 14 19 19 C 1.51371 * 105.16556 * 333.65621 * 18 17 15 20 20 C 1.38496 * 130.38569 * 197.16967 * 19 18 17 21 21 C 1.38112 * 120.21527 * 180.02562 * 20 19 18 22 22 C 1.38251 * 119.93066 * 359.97438 * 21 20 19 23 23 C 1.38103 * 119.93652 * 359.97438 * 22 21 20 24 24 C 1.38217 * 109.76216 * 17.18692 * 19 18 17 25 25 H 0.96995 * 120.00475 * 359.97438 * 1 2 3 26 26 H 1.09009 * 109.47290 * 59.99999 * 9 7 2 27 27 H 1.08998 * 109.47607 * 300.00424 * 9 7 2 28 28 H 0.97000 * 119.99456 * 359.97438 * 10 9 7 29 29 H 0.97000 * 119.99736 * 0.26819 * 13 11 10 30 30 H 1.08998 * 109.46968 * 299.99782 * 14 13 11 31 31 H 1.08997 * 109.47198 * 59.99605 * 14 13 11 32 32 H 0.96709 * 113.99671 * 59.30582 * 16 15 14 33 33 H 1.09005 * 110.82593 * 25.64868 * 17 15 14 34 34 H 1.09003 * 110.82396 * 149.19492 * 17 15 14 35 35 H 1.08998 * 110.30927 * 214.73235 * 18 17 15 36 36 H 1.09002 * 110.30544 * 92.57326 * 18 17 15 37 37 H 1.08007 * 119.89601 * 0.02562 * 20 19 18 38 38 H 1.07994 * 120.03266 * 180.02562 * 21 20 19 39 39 H 1.07999 * 120.02991 * 180.02562 * 22 21 20 40 40 H 1.08002 * 119.88961 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4464 2.6527 0.7001 6 1 3.5467 1.4404 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 1.4647 -2.1293 -0.0005 9 6 3.5116 -1.1939 -0.0011 10 7 4.0001 -2.5750 -0.0010 11 6 5.3252 -2.8212 -0.0009 12 8 6.1152 -1.8970 -0.0014 13 7 5.7745 -4.0919 0.0047 14 6 7.2149 -4.3594 0.0109 15 6 7.4528 -5.8708 0.0172 16 8 6.8760 -6.4578 1.1854 17 6 8.9645 -6.1752 -0.0470 18 6 9.2084 -6.3239 -1.5638 19 6 7.8775 -6.7600 -2.1380 20 6 7.5732 -7.3386 -3.3590 21 6 6.2658 -7.6558 -3.6713 22 6 5.2569 -7.3957 -2.7625 23 6 5.5585 -6.8198 -1.5441 24 6 6.8687 -6.4997 -1.2296 25 1 -0.4850 0.8400 0.0004 26 1 3.8753 -0.6802 0.8889 27 1 3.8746 -0.6798 -0.8910 28 1 3.3698 -3.3123 -0.0002 29 1 5.1442 -4.8292 0.0048 30 1 7.6692 -3.9234 -0.8788 31 1 7.6627 -3.9177 0.9011 32 1 5.9226 -6.3172 1.2665 33 1 9.5443 -5.3464 0.3593 34 1 9.1954 -7.1036 0.4754 35 1 9.9683 -7.0823 -1.7522 36 1 9.5111 -5.3691 -1.9936 37 1 8.3609 -7.5425 -4.0693 38 1 6.0319 -8.1072 -4.6241 39 1 4.2341 -7.6434 -3.0049 40 1 4.7698 -6.6173 -0.8345 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000787371388.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:12 Heat of formation + Delta-G solvation = -54.971426 kcal Electronic energy + Delta-G solvation = -22867.697684 eV Core-core repulsion = 19454.043551 eV Total energy + Delta-G solvation = -3413.654133 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.98944 -39.20624 -37.46355 -34.91425 -34.42758 -33.87252 -32.31425 -31.18498 -29.47656 -28.61824 -27.26407 -24.61795 -22.96957 -22.07461 -21.37982 -20.54978 -20.19476 -18.46731 -17.57570 -16.71475 -16.30451 -15.95180 -15.59317 -15.22213 -14.97794 -14.75979 -14.35702 -14.00973 -13.79221 -13.50472 -13.26772 -13.06174 -12.87083 -12.74119 -12.36393 -12.27074 -12.04300 -11.84800 -11.72057 -11.22668 -11.08832 -10.95264 -10.75681 -10.26529 -9.96321 -9.63664 -9.45973 -9.05988 -8.93421 -8.80674 -8.75283 -8.03639 -6.20539 -4.22510 1.09124 1.16004 3.13882 3.28561 3.35650 3.44181 3.49060 3.76085 3.88413 4.05215 4.26030 4.34843 4.46300 4.72436 4.77083 4.79394 4.90587 5.05133 5.11531 5.15148 5.27765 5.33575 5.43932 5.56294 5.61864 5.72474 5.75571 5.82279 5.90328 6.20631 6.28770 6.34324 6.64753 6.71593 6.74997 7.11685 7.21859 7.30591 7.38670 7.52127 8.27335 8.66643 8.80296 9.17724 9.40746 10.91410 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022022 B = 0.003655 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.165537 B = 7658.856788 C = 8220.004337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.078 3.922 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.260 1.260 7 C -0.542 4.542 8 H 0.079 0.921 9 C 0.238 3.762 10 N -0.722 5.722 11 C 0.697 3.303 12 O -0.601 6.601 13 N -0.754 5.754 14 C 0.125 3.875 15 C 0.164 3.836 16 O -0.546 6.546 17 C -0.102 4.102 18 C -0.084 4.084 19 C -0.088 4.088 20 C -0.109 4.109 21 C -0.114 4.114 22 C -0.117 4.117 23 C -0.095 4.095 24 C -0.123 4.123 25 H 0.267 0.733 26 H 0.023 0.977 27 H 0.018 0.982 28 H 0.391 0.609 29 H 0.387 0.613 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.376 0.624 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.121 0.879 38 H 0.124 0.876 39 H 0.127 0.873 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.030 -17.947 -4.170 24.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.126 4.126 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.184 1.184 7 C -0.580 4.580 8 H 0.097 0.903 9 C 0.116 3.884 10 N -0.374 5.374 11 C 0.396 3.604 12 O -0.481 6.481 13 N -0.413 5.413 14 C -0.001 4.001 15 C 0.123 3.877 16 O -0.352 6.352 17 C -0.139 4.139 18 C -0.120 4.120 19 C -0.088 4.088 20 C -0.127 4.127 21 C -0.132 4.132 22 C -0.135 4.135 23 C -0.113 4.113 24 C -0.124 4.124 25 H 0.077 0.923 26 H 0.041 0.959 27 H 0.036 0.964 28 H 0.224 0.776 29 H 0.221 0.779 30 H 0.092 0.908 31 H 0.096 0.904 32 H 0.224 0.776 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.105 0.895 37 H 0.139 0.861 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 17.195 -17.093 -4.059 24.583 hybrid contribution -1.066 0.371 -0.274 1.161 sum 16.129 -16.722 -4.333 23.633 Atomic orbital electron populations 1.69879 1.06205 1.27421 1.49557 1.24775 0.94781 0.99155 0.93873 0.86815 0.80613 0.83196 0.79061 1.19860 1.20916 1.18432 1.21085 0.88535 0.95190 1.53217 0.90312 1.19368 0.94834 0.77569 0.96666 1.45382 1.03608 1.11076 1.77306 1.16064 0.83604 0.82488 0.78210 1.90869 1.55407 1.43060 1.58722 1.45060 1.07065 1.06693 1.82494 1.21723 0.81719 0.93419 1.03204 1.21045 0.94069 0.90518 0.82112 1.86583 1.27019 1.78390 1.43219 1.22269 0.91738 1.03835 0.96090 1.21097 0.94514 1.02185 0.94248 1.20468 0.95837 0.98118 0.94362 1.20625 0.96737 0.99573 0.95757 1.21084 0.92666 0.99998 0.99472 1.21067 0.99563 0.99255 0.93662 1.20549 0.94808 0.98802 0.97130 1.21038 0.94032 1.00091 0.97228 0.92272 0.95865 0.96370 0.77557 0.77917 0.90823 0.90429 0.77598 0.89215 0.89195 0.90000 0.89495 0.86137 0.85769 0.85545 0.86471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.57 13.96 55.43 0.77 -25.80 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 3 Si 0.88 21.61 27.47 -169.99 -4.67 16.94 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -6.40 6.54 56.52 0.37 -6.03 16 7 C -0.54 -14.95 9.83 -34.44 -0.34 -15.29 16 8 H 0.08 2.25 7.84 -52.49 -0.41 1.84 16 9 C 0.24 5.97 4.50 -5.19 -0.02 5.94 16 10 N -0.72 -14.91 5.55 -66.41 -0.37 -15.28 16 11 C 0.70 13.85 8.57 -86.92 -0.74 13.11 16 12 O -0.60 -14.40 16.34 5.28 0.09 -14.31 16 13 N -0.75 -10.86 5.11 -65.22 -0.33 -11.20 16 14 C 0.12 1.61 4.75 -4.04 -0.02 1.59 16 15 C 0.16 1.72 0.98 -90.74 -0.09 1.63 16 16 O -0.55 -5.90 13.05 -35.23 -0.46 -6.36 16 17 C -0.10 -0.88 6.32 -25.33 -0.16 -1.04 16 18 C -0.08 -0.67 6.76 -26.85 -0.18 -0.85 16 19 C -0.09 -0.89 6.14 -104.21 -0.64 -1.53 16 20 C -0.11 -1.02 10.04 -39.53 -0.40 -1.42 16 21 C -0.11 -1.05 10.05 -39.62 -0.40 -1.45 16 22 C -0.12 -1.14 10.05 -39.63 -0.40 -1.54 16 23 C -0.09 -0.98 9.17 -39.54 -0.36 -1.34 16 24 C -0.12 -1.33 4.85 -104.21 -0.51 -1.84 16 25 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.02 0.62 7.20 -51.92 -0.37 0.24 16 27 H 0.02 0.48 7.57 -51.93 -0.39 0.09 16 28 H 0.39 7.03 8.34 -40.82 -0.34 6.69 16 29 H 0.39 4.48 5.59 -40.82 -0.23 4.25 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.38 3.24 7.92 45.56 0.36 3.60 16 33 H 0.09 0.68 7.90 -51.93 -0.41 0.27 16 34 H 0.09 0.76 8.11 -51.93 -0.42 0.34 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.12 0.87 8.06 -52.48 -0.42 0.45 16 38 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 39 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 40 H 0.12 1.00 7.02 -52.49 -0.37 0.63 16 LS Contribution 332.24 15.07 5.01 5.01 Total: -1.00 -34.48 332.24 -9.03 -43.51 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -4.71 Total: 9.38 kcal Atomic # 6 Polarization: 2.46 SS G_CDS: -4.35 Total: -1.89 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.07 Total: -52.27 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.37 Total: -20.67 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.67 Total: 16.94 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.48 -9.03 -43.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000787371388.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.462 kcal (2) G-P(sol) polarization free energy of solvation -34.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds