Wall clock time and date at job start Tue Mar 31 2020 06:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09002 * 109.87159 * 2 1 4 4 C 1.54104 * 110.00887 * 121.08898 * 2 1 3 5 5 C 1.54988 * 104.25159 * 121.65756 * 4 2 1 6 6 C 1.54993 * 102.01122 * 20.66996 * 5 4 2 7 7 H 1.09002 * 110.62002 * 81.75816 * 6 5 4 8 8 C 1.53003 * 110.62073 * 204.59033 * 6 5 4 9 9 O 1.45195 * 109.47361 * 182.82285 * 8 6 5 10 10 C 1.34811 * 116.99821 * 180.02562 * 9 8 6 11 11 O 1.21535 * 120.00168 * 359.97438 * 10 9 8 12 12 C 1.47285 * 119.99823 * 180.02562 * 10 9 8 13 13 C 1.39286 * 120.29063 * 358.26695 * 12 10 9 14 14 C 1.38201 * 120.08838 * 180.02562 * 13 12 10 15 15 C 1.38835 * 120.68438 * 0.02562 * 14 13 12 16 16 C 1.37597 * 120.58134 * 0.02562 * 15 14 13 17 17 C 1.40714 * 119.88806 * 359.97132 * 16 15 14 18 18 C 1.40855 * 120.33167 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99778 * 214.02889 * 18 17 16 20 20 C 1.40295 * 120.00070 * 34.02816 * 18 17 16 21 21 N 1.30610 * 120.00106 * 10.70450 * 20 18 17 22 22 Si 1.86801 * 119.99997 * 190.70299 * 20 18 17 23 23 H 1.48502 * 109.47218 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.47290 * 119.99696 * 22 20 18 25 25 H 1.48494 * 109.47408 * 239.99945 * 22 20 18 26 26 O 1.43749 * 109.87988 * 238.99758 * 2 1 3 27 27 H 1.09004 * 109.47197 * 179.55106 * 1 2 3 28 28 H 1.09001 * 109.47043 * 299.54556 * 1 2 3 29 29 H 1.08998 * 109.47591 * 59.54786 * 1 2 3 30 30 H 1.08998 * 110.48826 * 240.19795 * 4 2 1 31 31 H 1.08997 * 110.48045 * 2.85041 * 4 2 1 32 32 H 1.09004 * 110.84436 * 262.54551 * 5 4 2 33 33 H 1.08996 * 111.04832 * 138.88715 * 5 4 2 34 34 H 1.09004 * 109.46577 * 62.81948 * 8 6 5 35 35 H 1.09002 * 109.47246 * 302.82965 * 8 6 5 36 36 H 1.08007 * 119.95870 * 0.02773 * 13 12 10 37 37 H 1.08005 * 119.65616 * 179.97438 * 14 13 12 38 38 H 1.07997 * 119.71131 * 179.72424 * 15 14 13 39 39 H 1.08001 * 120.05600 * 179.97438 * 16 15 14 40 40 H 0.97001 * 119.99908 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0572 -0.7477 1.2400 5 6 2.9286 -1.8885 0.6558 6 6 3.2397 -1.3601 -0.7677 7 1 4.0694 -0.6537 -0.7420 8 6 3.5506 -2.5192 -1.7168 9 8 3.9030 -1.9936 -3.0235 10 6 4.2068 -2.8911 -3.9825 11 8 4.1783 -4.0802 -3.7330 12 6 4.5743 -2.4304 -5.3324 13 6 4.5750 -1.0708 -5.6348 14 6 4.9201 -0.6432 -6.9029 15 6 5.2685 -1.5570 -7.8883 16 6 5.2762 -2.9066 -7.6204 17 6 4.9290 -3.3688 -6.3374 18 6 4.9343 -4.7482 -6.0527 19 1 4.2118 -5.1601 -5.3637 20 6 5.8779 -5.5871 -6.6643 21 7 6.8770 -5.0711 -7.3288 22 14 5.7056 -7.4422 -6.5281 23 1 4.4976 -7.7698 -5.7290 24 1 5.5738 -8.0282 -7.8863 25 1 6.9079 -8.0035 -5.8615 26 8 2.0187 -0.6963 -1.1587 27 1 -0.3634 -1.0277 -0.0081 28 1 -0.3633 0.5068 0.8940 29 1 -0.3634 0.5208 -0.8859 30 1 2.6645 -0.0844 1.8558 31 1 1.2294 -1.1564 1.8195 32 1 2.3665 -2.8214 0.6101 33 1 3.8447 -2.0158 1.2323 34 1 2.6733 -3.1599 -1.8072 35 1 4.3846 -3.0990 -1.3213 36 1 4.3056 -0.3496 -4.8772 37 1 4.9179 0.4127 -7.1298 38 1 5.5311 -1.2058 -8.8752 39 1 5.5482 -3.6100 -8.3934 40 1 7.5292 -5.6512 -7.7519 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789017877.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:22 Heat of formation + Delta-G solvation = -122.860793 kcal Electronic energy + Delta-G solvation = -22738.617080 eV Core-core repulsion = 19289.726292 eV Total energy + Delta-G solvation = -3448.890788 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.81775 -39.07293 -37.20228 -35.27100 -33.73552 -32.44462 -32.17949 -30.10587 -29.64120 -28.11859 -25.56841 -24.12614 -22.43678 -21.32711 -21.06492 -20.94972 -19.56709 -17.46737 -16.93644 -16.40404 -16.00885 -15.91924 -15.27787 -15.03957 -14.65514 -14.19645 -13.77211 -13.45948 -13.27482 -12.94124 -12.69792 -12.60027 -12.39051 -12.27020 -11.81367 -11.64693 -11.60588 -11.23980 -11.17781 -11.08453 -10.94493 -10.81434 -10.62397 -10.59150 -10.17232 -9.87178 -9.69209 -9.65406 -9.32737 -8.71629 -7.62381 -7.41049 -6.88420 -4.47963 2.23553 2.79820 3.06827 3.16494 3.19995 3.51310 3.71981 3.92137 3.95219 4.38917 4.58890 4.61642 4.74407 4.96417 5.08897 5.19961 5.31750 5.38620 5.41853 5.56114 5.56778 5.61585 5.74783 5.81744 5.89090 5.97865 6.03934 6.16212 6.21611 6.38938 6.61821 6.93697 6.96053 7.07123 7.15421 7.35402 7.50314 7.65085 7.91642 7.96417 8.16298 8.59626 8.74083 8.81205 9.14098 10.06694 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019327 B = 0.004046 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.388132 B = 6919.511199 C = 8016.321485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.068 3.932 3 H 0.067 0.933 4 C -0.150 4.150 5 C -0.148 4.148 6 C 0.080 3.920 7 H 0.080 0.920 8 C 0.076 3.924 9 O -0.362 6.362 10 C 0.505 3.495 11 O -0.519 6.519 12 C -0.250 4.250 13 C -0.035 4.035 14 C -0.248 4.248 15 C -0.090 4.090 16 C -0.150 4.150 17 C 0.148 3.852 18 C -0.421 4.421 19 H 0.111 0.889 20 C 0.070 3.930 21 N -0.785 5.785 22 Si 0.917 3.083 23 H -0.256 1.256 24 H -0.272 1.272 25 H -0.273 1.273 26 O -0.359 6.359 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.077 0.923 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.118 0.882 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.063 6.005 12.293 14.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.010 3.990 3 H 0.085 0.915 4 C -0.188 4.188 5 C -0.186 4.186 6 C 0.023 3.977 7 H 0.097 0.903 8 C 0.002 3.998 9 O -0.281 6.281 10 C 0.356 3.644 11 O -0.410 6.410 12 C -0.253 4.253 13 C -0.054 4.054 14 C -0.267 4.267 15 C -0.109 4.109 16 C -0.169 4.169 17 C 0.144 3.856 18 C -0.449 4.449 19 H 0.129 0.871 20 C -0.150 4.150 21 N -0.410 5.410 22 Si 0.741 3.259 23 H -0.179 1.179 24 H -0.197 1.197 25 H -0.198 1.198 26 O -0.279 6.279 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.095 0.905 36 H 0.121 0.879 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.136 0.864 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.971 5.577 12.064 14.570 hybrid contribution 0.265 -0.792 0.323 0.896 sum -5.706 4.784 12.387 14.453 Atomic orbital electron populations 1.21919 0.93844 1.02793 1.02215 1.22725 0.95178 0.95894 0.85204 0.91538 1.23033 1.00064 0.97570 0.98140 1.23124 1.00773 0.99340 0.95321 1.23158 0.88627 0.93780 0.92155 0.90261 1.22757 1.00787 0.94550 0.81755 1.86619 1.80479 1.40902 1.20102 1.21382 0.74201 0.83811 0.84988 1.90705 1.51020 1.17457 1.81858 1.18752 1.23044 0.93646 0.89827 1.20856 0.94786 0.94108 0.95622 1.20359 1.14092 0.97528 0.94754 1.20849 0.98657 0.93973 0.97372 1.21283 1.04766 0.94084 0.96774 1.17460 0.86193 0.92535 0.89384 1.20399 1.12488 0.91896 1.20115 0.87132 1.26179 0.94164 1.02227 0.92382 1.69723 1.08836 1.38435 1.24003 0.86100 0.79850 0.81058 0.78902 1.17921 1.19687 1.19798 1.89033 1.38956 1.67482 1.32385 0.91930 0.91536 0.91794 0.90656 0.90254 0.90069 0.89751 0.91156 0.90469 0.87870 0.88809 0.88872 0.86405 0.90546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 9.37 37.15 0.35 -1.06 16 2 C 0.07 0.74 4.05 -26.16 -0.11 0.63 16 3 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 4 C -0.15 -1.30 6.65 -25.10 -0.17 -1.47 16 5 C -0.15 -1.48 6.60 -24.63 -0.16 -1.65 16 6 C 0.08 1.10 3.63 -25.68 -0.09 1.01 16 7 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 8 C 0.08 1.30 5.22 37.16 0.19 1.50 16 9 O -0.36 -7.78 9.47 -41.72 -0.40 -8.18 16 10 C 0.51 12.58 7.86 34.41 0.27 12.85 16 11 O -0.52 -13.78 13.30 -19.29 -0.26 -14.04 16 12 C -0.25 -6.47 5.92 -104.39 -0.62 -7.09 16 13 C -0.04 -0.82 9.60 -39.21 -0.38 -1.20 16 14 C -0.25 -5.50 10.03 -39.37 -0.39 -5.90 16 15 C -0.09 -2.05 10.01 -39.59 -0.40 -2.45 16 16 C -0.15 -3.84 8.62 -38.88 -0.34 -4.17 16 17 C 0.15 4.03 5.50 -106.53 -0.59 3.45 16 18 C -0.42 -11.59 7.79 -37.82 -0.29 -11.89 16 19 H 0.11 3.14 5.72 -52.49 -0.30 2.84 16 20 C 0.07 1.78 5.23 -17.30 -0.09 1.69 16 21 N -0.79 -20.13 11.21 55.57 0.62 -19.50 16 22 Si 0.92 19.31 29.58 -169.99 -5.03 14.28 16 23 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 24 H -0.27 -5.47 7.11 56.52 0.40 -5.06 16 25 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 26 O -0.36 -5.46 10.89 -35.24 -0.38 -5.85 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.59 7.70 -51.93 -0.40 0.19 16 32 H 0.08 0.81 8.06 -51.93 -0.42 0.39 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.10 2.20 7.60 -52.48 -0.40 1.80 16 37 H 0.09 1.80 8.06 -52.48 -0.42 1.38 16 38 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.12 3.03 6.64 -52.49 -0.35 2.68 16 40 H 0.28 6.54 8.29 -40.82 -0.34 6.20 16 LS Contribution 335.25 15.07 5.05 5.05 Total: -1.00 -30.25 335.25 -8.85 -39.10 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -5.65 Total: 4.87 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -2.81 Total: -15.73 kcal Atomic # 7 Polarization: -20.13 SS G_CDS: 0.62 Total: -19.50 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -1.04 Total: -28.06 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.25 -8.85 -39.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789017877.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.763 kcal (2) G-P(sol) polarization free energy of solvation -30.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds