Wall clock time and date at job start Tue Mar 31 2020 06:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 H 1.09002 * 109.87159 * 2 1 4 4 C 1.54104 * 110.00887 * 121.08898 * 2 1 3 5 5 C 1.54988 * 104.25159 * 121.65756 * 4 2 1 6 6 C 1.54993 * 102.01122 * 20.66996 * 5 4 2 7 7 H 1.09002 * 110.62002 * 81.75816 * 6 5 4 8 8 C 1.53003 * 110.62073 * 204.59033 * 6 5 4 9 9 O 1.45195 * 109.47361 * 182.82285 * 8 6 5 10 10 C 1.34811 * 116.99821 * 180.02562 * 9 8 6 11 11 O 1.21535 * 120.00168 * 359.97438 * 10 9 8 12 12 C 1.47285 * 119.99823 * 180.02562 * 10 9 8 13 13 C 1.39286 * 120.29063 * 358.26695 * 12 10 9 14 14 C 1.38201 * 120.08838 * 180.02562 * 13 12 10 15 15 C 1.38835 * 120.68438 * 0.02562 * 14 13 12 16 16 C 1.37597 * 120.58134 * 0.02562 * 15 14 13 17 17 C 1.40714 * 119.88806 * 359.97132 * 16 15 14 18 18 C 1.40855 * 120.33167 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99778 * 214.02889 * 18 17 16 20 20 C 1.40295 * 120.00070 * 34.02816 * 18 17 16 21 21 N 1.30610 * 120.00106 * 10.70450 * 20 18 17 22 22 Si 1.86801 * 119.99997 * 190.70299 * 20 18 17 23 23 H 1.48502 * 109.47218 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.47290 * 119.99696 * 22 20 18 25 25 H 1.48494 * 109.47408 * 239.99945 * 22 20 18 26 26 O 1.43749 * 109.87988 * 238.99758 * 2 1 3 27 27 H 1.09004 * 109.47197 * 179.55106 * 1 2 3 28 28 H 1.09001 * 109.47043 * 299.54556 * 1 2 3 29 29 H 1.08998 * 109.47591 * 59.54786 * 1 2 3 30 30 H 1.08998 * 110.48826 * 240.19795 * 4 2 1 31 31 H 1.08997 * 110.48045 * 2.85041 * 4 2 1 32 32 H 1.09004 * 110.84436 * 262.54551 * 5 4 2 33 33 H 1.08996 * 111.04832 * 138.88715 * 5 4 2 34 34 H 1.09004 * 109.46577 * 62.81948 * 8 6 5 35 35 H 1.09002 * 109.47246 * 302.82965 * 8 6 5 36 36 H 1.08007 * 119.95870 * 0.02773 * 13 12 10 37 37 H 1.08005 * 119.65616 * 179.97438 * 14 13 12 38 38 H 1.07997 * 119.71131 * 179.72424 * 15 14 13 39 39 H 1.08001 * 120.05600 * 179.97438 * 16 15 14 40 40 H 0.97001 * 119.99908 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 6 2.0572 -0.7477 1.2400 5 6 2.9286 -1.8885 0.6558 6 6 3.2397 -1.3601 -0.7677 7 1 4.0694 -0.6537 -0.7420 8 6 3.5506 -2.5192 -1.7168 9 8 3.9030 -1.9936 -3.0235 10 6 4.2068 -2.8911 -3.9825 11 8 4.1783 -4.0802 -3.7330 12 6 4.5743 -2.4304 -5.3324 13 6 4.5750 -1.0708 -5.6348 14 6 4.9201 -0.6432 -6.9029 15 6 5.2685 -1.5570 -7.8883 16 6 5.2762 -2.9066 -7.6204 17 6 4.9290 -3.3688 -6.3374 18 6 4.9343 -4.7482 -6.0527 19 1 4.2118 -5.1601 -5.3637 20 6 5.8779 -5.5871 -6.6643 21 7 6.8770 -5.0711 -7.3288 22 14 5.7056 -7.4422 -6.5281 23 1 4.4976 -7.7698 -5.7290 24 1 5.5738 -8.0282 -7.8863 25 1 6.9079 -8.0035 -5.8615 26 8 2.0187 -0.6963 -1.1587 27 1 -0.3634 -1.0277 -0.0081 28 1 -0.3633 0.5068 0.8940 29 1 -0.3634 0.5208 -0.8859 30 1 2.6645 -0.0844 1.8558 31 1 1.2294 -1.1564 1.8195 32 1 2.3665 -2.8214 0.6101 33 1 3.8447 -2.0158 1.2323 34 1 2.6733 -3.1599 -1.8072 35 1 4.3846 -3.0990 -1.3213 36 1 4.3056 -0.3496 -4.8772 37 1 4.9179 0.4127 -7.1298 38 1 5.5311 -1.2058 -8.8752 39 1 5.5482 -3.6100 -8.3934 40 1 7.5292 -5.6512 -7.7519 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789017877.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:21 Heat of formation + Delta-G solvation = -138.999913 kcal Electronic energy + Delta-G solvation = -22739.316925 eV Core-core repulsion = 19289.726292 eV Total energy + Delta-G solvation = -3449.590633 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.27040 -40.44872 -39.03670 -37.09695 -35.63616 -33.37230 -33.20125 -31.96556 -31.50277 -29.25642 -27.45410 -25.31191 -24.05683 -22.89925 -22.37825 -21.92960 -21.35881 -19.40306 -18.43267 -17.82395 -17.56945 -17.08735 -17.07453 -16.42551 -16.09333 -15.83530 -15.26999 -14.86025 -14.55490 -14.44833 -14.27928 -13.97985 -13.68961 -13.45990 -13.16382 -13.00765 -12.89462 -12.85411 -12.64575 -12.55936 -12.37358 -12.22824 -11.99239 -11.84368 -11.57236 -11.53670 -11.51144 -11.18787 -10.66780 -10.63991 -9.52952 -9.34020 -8.77064 -6.48212 0.31567 0.97283 1.33735 1.47213 1.49520 1.92344 2.02142 2.18599 2.69548 2.75509 3.53487 3.61776 3.68454 3.93195 4.01442 4.04061 4.21702 4.35363 4.38481 4.39863 4.44296 4.49183 4.58599 4.68377 4.80994 4.89361 4.89859 5.03012 5.05618 5.10774 5.16727 5.17424 5.25473 5.30173 5.49475 5.62291 5.79172 5.98658 6.01636 6.04844 6.27497 6.61952 6.76175 6.86209 7.23685 8.20796 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019327 B = 0.004046 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.388132 B = 6919.511199 C = 8016.321485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.055 3.945 3 H 0.074 0.926 4 C -0.141 4.141 5 C -0.142 4.142 6 C 0.081 3.919 7 H 0.085 0.915 8 C 0.069 3.931 9 O -0.363 6.363 10 C 0.503 3.497 11 O -0.546 6.546 12 C -0.278 4.278 13 C -0.039 4.039 14 C -0.238 4.238 15 C -0.082 4.082 16 C -0.174 4.174 17 C 0.121 3.879 18 C -0.460 4.460 19 H 0.089 0.911 20 C 0.035 3.965 21 N -0.810 5.810 22 Si 0.983 3.017 23 H -0.268 1.268 24 H -0.251 1.251 25 H -0.263 1.263 26 O -0.396 6.396 27 H 0.055 0.945 28 H 0.094 0.906 29 H 0.051 0.949 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.059 0.941 35 H 0.084 0.916 36 H 0.122 0.878 37 H 0.134 0.866 38 H 0.128 0.872 39 H 0.108 0.892 40 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.024 7.248 13.355 16.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.002 4.002 3 H 0.092 0.908 4 C -0.178 4.178 5 C -0.180 4.180 6 C 0.023 3.977 7 H 0.103 0.897 8 C -0.005 4.005 9 O -0.281 6.281 10 C 0.355 3.645 11 O -0.439 6.439 12 C -0.281 4.281 13 C -0.058 4.058 14 C -0.257 4.257 15 C -0.100 4.100 16 C -0.194 4.194 17 C 0.117 3.883 18 C -0.488 4.488 19 H 0.107 0.893 20 C -0.182 4.182 21 N -0.435 5.435 22 Si 0.803 3.197 23 H -0.193 1.193 24 H -0.175 1.175 25 H -0.187 1.187 26 O -0.317 6.317 27 H 0.074 0.926 28 H 0.113 0.887 29 H 0.070 0.930 30 H 0.115 0.885 31 H 0.114 0.886 32 H 0.097 0.903 33 H 0.125 0.875 34 H 0.078 0.922 35 H 0.103 0.897 36 H 0.140 0.860 37 H 0.152 0.848 38 H 0.146 0.854 39 H 0.126 0.874 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.934 6.860 13.132 15.960 hybrid contribution 0.204 -0.989 0.034 1.010 sum -5.730 5.871 13.166 15.512 Atomic orbital electron populations 1.21942 0.92991 1.02577 1.03072 1.23033 0.95994 0.96180 0.84952 0.90819 1.23036 1.00535 0.96991 0.97286 1.23148 1.02135 0.99696 0.92980 1.23217 0.88705 0.92756 0.92976 0.89726 1.23144 1.00592 0.96493 0.80279 1.86579 1.79895 1.40243 1.21398 1.21397 0.73766 0.83742 0.85584 1.90676 1.52205 1.18581 1.82479 1.19120 1.23685 0.94899 0.90375 1.21123 0.94424 0.93318 0.96888 1.20826 1.11693 0.99441 0.93734 1.21248 0.96720 0.92892 0.99185 1.21287 1.06599 0.95408 0.96061 1.17823 0.86913 0.93032 0.90485 1.20384 1.13782 0.92955 1.21644 0.89334 1.26890 0.93274 1.06333 0.91723 1.69726 1.09228 1.40183 1.24409 0.85148 0.79352 0.75566 0.79602 1.19257 1.17539 1.18749 1.88995 1.39449 1.68181 1.35053 0.92622 0.88695 0.92971 0.88489 0.88631 0.90322 0.87534 0.92220 0.89734 0.85977 0.84820 0.85370 0.87425 0.89461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.56 9.37 71.98 0.67 -1.89 16 2 C 0.06 1.11 4.05 30.96 0.13 1.24 16 3 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 4 C -0.14 -2.02 6.65 31.65 0.21 -1.81 16 5 C -0.14 -2.56 6.60 31.96 0.21 -2.35 16 6 C 0.08 2.16 3.63 31.28 0.11 2.28 16 7 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 8 C 0.07 2.40 5.22 71.98 0.38 2.78 16 9 O -0.36 -15.95 9.47 -56.34 -0.53 -16.49 16 10 C 0.50 26.05 7.86 70.20 0.55 26.60 16 11 O -0.55 -30.50 13.30 19.72 0.26 -30.23 16 12 C -0.28 -14.77 5.92 -19.71 -0.12 -14.88 16 13 C -0.04 -1.80 9.60 22.51 0.22 -1.59 16 14 C -0.24 -9.98 10.03 22.40 0.22 -9.75 16 15 C -0.08 -3.61 10.01 22.26 0.22 -3.39 16 16 C -0.17 -9.05 8.62 22.72 0.20 -8.85 16 17 C 0.12 6.83 5.50 -21.10 -0.12 6.71 16 18 C -0.46 -26.53 7.79 23.41 0.18 -26.35 16 19 H 0.09 5.37 5.72 -2.91 -0.02 5.35 16 20 C 0.03 1.81 5.23 85.37 0.45 2.25 16 21 N -0.81 -42.30 11.21 21.88 0.25 -42.06 16 22 Si 0.98 40.45 29.58 68.60 2.03 42.48 16 23 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 24 H -0.25 -9.44 7.11 99.48 0.71 -8.74 16 25 H -0.26 -10.31 7.11 99.48 0.71 -9.60 16 26 O -0.40 -11.90 10.89 -148.97 -1.62 -13.52 16 27 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 28 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.10 1.00 8.14 -2.39 -0.02 0.99 16 31 H 0.10 1.09 7.70 -2.39 -0.02 1.07 16 32 H 0.08 1.46 8.06 -2.38 -0.02 1.44 16 33 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.06 2.18 8.14 -2.38 -0.02 2.16 16 35 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 36 H 0.12 5.04 7.60 -2.91 -0.02 5.02 16 37 H 0.13 4.55 8.06 -2.91 -0.02 4.52 16 38 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 39 H 0.11 5.69 6.64 -2.91 -0.02 5.67 16 40 H 0.29 13.66 8.29 -92.71 -0.77 12.89 16 Total: -1.00 -68.38 335.25 4.93 -63.45 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 1.03 Total: 25.38 kcal Atomic # 6 Polarization: -32.52 SS G_CDS: 3.52 Total: -29.00 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.25 Total: -42.06 kcal Atomic # 8 Polarization: -58.35 SS G_CDS: -1.89 Total: -60.25 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 2.03 Total: 42.48 kcal Total: -68.38 4.93 -63.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789017877.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.555 kcal (2) G-P(sol) polarization free energy of solvation -68.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds