Wall clock time and date at job start Tue Mar 31 2020 06:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 110.55063 * 2 1 4 4 C 1.54993 * 110.61517 * 237.12092 * 2 1 3 5 5 C 1.54810 * 102.09272 * 204.47774 * 4 2 1 6 6 C 1.54095 * 104.18530 * 20.88022 * 5 4 2 7 7 H 1.09006 * 109.87691 * 242.45405 * 6 5 4 8 8 C 1.53005 * 109.88021 * 121.45474 * 6 5 4 9 9 O 1.45198 * 109.47150 * 175.30205 * 8 6 5 10 10 C 1.34809 * 116.99706 * 179.97438 * 9 8 6 11 11 O 1.21528 * 120.00210 * 0.02562 * 10 9 8 12 12 C 1.47284 * 119.99611 * 180.02562 * 10 9 8 13 13 C 1.39292 * 120.29092 * 5.65049 * 12 10 9 14 14 C 1.38202 * 120.08401 * 179.69456 * 13 12 10 15 15 C 1.38834 * 120.68322 * 0.61064 * 14 13 12 16 16 C 1.37602 * 120.58652 * 359.66731 * 15 14 13 17 17 C 1.40710 * 119.88131 * 0.02585 * 16 15 14 18 18 C 1.40867 * 120.32800 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99889 * 208.88499 * 18 17 16 20 20 C 1.40293 * 120.00085 * 28.88555 * 18 17 16 21 21 N 1.30618 * 120.00008 * 14.74717 * 20 18 17 22 22 Si 1.86797 * 120.00079 * 194.75021 * 20 18 17 23 23 H 1.48502 * 109.46911 * 60.00015 * 22 20 18 24 24 H 1.48499 * 109.47353 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47189 * 300.00339 * 22 20 18 26 26 O 1.43744 * 107.42269 * 1.95408 * 6 5 4 27 27 H 1.08995 * 109.47724 * 182.87858 * 1 2 3 28 28 H 1.09007 * 109.47223 * 302.88017 * 1 2 3 29 29 H 1.09006 * 109.47477 * 62.87714 * 1 2 3 30 30 H 1.08998 * 110.91097 * 86.27835 * 4 2 1 31 31 H 1.09001 * 110.94009 * 322.68761 * 4 2 1 32 32 H 1.09003 * 110.48724 * 262.20608 * 5 4 2 33 33 H 1.09003 * 110.60391 * 139.61118 * 5 4 2 34 34 H 1.08994 * 109.46995 * 295.30679 * 8 6 5 35 35 H 1.09008 * 109.46676 * 55.30279 * 8 6 5 36 36 H 1.07997 * 119.95376 * 359.97438 * 13 12 10 37 37 H 1.08001 * 119.65732 * 180.27385 * 14 13 12 38 38 H 1.08004 * 119.71137 * 179.69556 * 15 14 13 39 39 H 1.07998 * 120.05760 * 180.02562 * 16 15 14 40 40 H 0.97000 * 120.00284 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0757 -0.7875 -1.2183 5 6 3.4794 -1.2157 -0.7254 6 6 3.3838 -1.1267 0.8100 7 1 4.0872 -0.3820 1.1826 8 6 3.6933 -2.4906 1.4305 9 8 3.7101 -2.3715 2.8775 10 6 3.9695 -3.4919 3.5809 11 8 4.1763 -4.5394 3.0005 12 6 4.0022 -3.4464 5.0526 13 6 3.6514 -2.2794 5.7274 14 6 3.6775 -2.2434 7.1087 15 6 4.0635 -3.3591 7.8394 16 6 4.4211 -4.5246 7.2012 17 6 4.3971 -4.5901 5.7959 18 6 4.7618 -5.7783 5.1329 19 1 5.1909 -5.7343 4.1427 20 6 4.5676 -7.0188 5.7587 21 7 3.7992 -7.1060 6.8114 22 14 5.4078 -8.5457 5.0866 23 1 6.8802 -8.3547 5.1179 24 1 5.0436 -9.7190 5.9209 25 1 4.9683 -8.7772 3.6873 26 8 2.0396 -0.7353 1.1356 27 1 -0.3634 -1.0263 0.0516 28 1 -0.3634 0.5579 0.8631 29 1 -0.3634 0.4685 -0.9147 30 1 2.1508 -0.1445 -2.0952 31 1 1.4550 -1.6585 -1.4289 32 1 4.2406 -0.5316 -1.1005 33 1 3.6997 -2.2373 -1.0353 34 1 2.9273 -3.2070 1.1338 35 1 4.6673 -2.8353 1.0830 36 1 3.3544 -1.4031 5.1706 37 1 3.3999 -1.3363 7.6250 38 1 4.0829 -3.3120 8.9182 39 1 4.7196 -5.3874 7.7780 40 1 3.6646 -7.9637 7.2440 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789017880.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:25 Heat of formation + Delta-G solvation = -122.639587 kcal Electronic energy + Delta-G solvation = -22775.944678 eV Core-core repulsion = 19327.063482 eV Total energy + Delta-G solvation = -3448.881196 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.81826 -39.03564 -37.17576 -35.24639 -33.77773 -32.37770 -32.24718 -30.09503 -29.61534 -28.10974 -25.57988 -24.09654 -22.34825 -21.39442 -21.03785 -20.95992 -19.54988 -17.47685 -16.91721 -16.35091 -16.16729 -15.79383 -15.29434 -14.82213 -14.66042 -14.20507 -14.01582 -13.44712 -13.21792 -12.89984 -12.72024 -12.58513 -12.28761 -12.18774 -11.83544 -11.62208 -11.57509 -11.34333 -11.13874 -11.05530 -10.98024 -10.77318 -10.66816 -10.60941 -10.19032 -9.83933 -9.70016 -9.62009 -9.28952 -8.70675 -7.60560 -7.45434 -6.91748 -4.47427 2.26661 2.82589 3.04002 3.09429 3.23792 3.54183 3.74477 3.89254 3.96508 4.39610 4.57557 4.59037 4.75528 4.95132 5.07967 5.23350 5.33266 5.39376 5.42023 5.56803 5.60645 5.64671 5.72670 5.82587 5.93505 5.98484 6.04742 6.18989 6.23884 6.41906 6.63910 6.93863 6.96685 7.09402 7.16768 7.37526 7.51976 7.68586 7.93040 7.97573 8.17668 8.57295 8.74102 8.81707 9.15754 10.01951 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018472 B = 0.004122 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.484335 B = 6790.641892 C = 7831.405935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.067 3.933 3 H 0.069 0.931 4 C -0.150 4.150 5 C -0.150 4.150 6 C 0.081 3.919 7 H 0.078 0.922 8 C 0.072 3.928 9 O -0.362 6.362 10 C 0.505 3.495 11 O -0.521 6.521 12 C -0.256 4.256 13 C -0.032 4.032 14 C -0.253 4.253 15 C -0.089 4.089 16 C -0.156 4.156 17 C 0.145 3.855 18 C -0.417 4.417 19 H 0.111 0.889 20 C 0.071 3.929 21 N -0.778 5.778 22 Si 0.917 3.083 23 H -0.261 1.261 24 H -0.277 1.277 25 H -0.261 1.261 26 O -0.357 6.357 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.074 0.926 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.092 0.908 39 H 0.120 0.880 40 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.777 9.287 -11.386 14.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.009 3.991 3 H 0.087 0.913 4 C -0.188 4.188 5 C -0.188 4.188 6 C 0.023 3.977 7 H 0.095 0.905 8 C -0.003 4.003 9 O -0.280 6.280 10 C 0.357 3.643 11 O -0.413 6.413 12 C -0.258 4.258 13 C -0.051 4.051 14 C -0.272 4.272 15 C -0.107 4.107 16 C -0.175 4.175 17 C 0.141 3.859 18 C -0.444 4.444 19 H 0.128 0.872 20 C -0.150 4.150 21 N -0.402 5.402 22 Si 0.741 3.259 23 H -0.185 1.185 24 H -0.202 1.202 25 H -0.185 1.185 26 O -0.277 6.277 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.121 0.879 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.138 0.862 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.939 8.757 -11.221 14.365 hybrid contribution 0.336 -0.729 -0.474 0.932 sum -1.603 8.029 -11.695 14.276 Atomic orbital electron populations 1.21766 0.93230 1.03158 1.02209 1.23168 0.95325 0.95358 0.85247 0.91336 1.23179 0.96149 1.00955 0.98493 1.22918 0.98068 1.03374 0.94393 1.22750 0.85677 0.95855 0.93462 0.90458 1.22963 1.01718 0.96017 0.79633 1.86628 1.83736 1.38862 1.18794 1.21404 0.73520 0.80438 0.88984 1.90696 1.48126 1.30740 1.71713 1.18686 1.21852 0.98417 0.86891 1.20842 0.94605 0.95597 0.94044 1.20331 1.14917 0.98459 0.93534 1.20836 0.98491 0.93760 0.97651 1.21307 1.05030 0.96838 0.94295 1.17431 0.86126 0.90894 0.91402 1.20384 1.31118 0.89552 1.03361 0.87171 1.26217 0.93272 1.01795 0.93671 1.69733 1.25998 1.27991 1.16460 0.86200 0.80646 0.78911 0.80150 1.18542 1.20230 1.18496 1.89095 1.27250 1.73208 1.38107 0.91660 0.91747 0.91345 0.90245 0.90288 0.90118 0.89945 0.91313 0.90768 0.87920 0.88897 0.88952 0.86175 0.90330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.66 37.16 0.36 -1.03 16 2 C 0.07 0.73 3.97 -25.68 -0.10 0.62 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.15 -1.36 6.59 -24.72 -0.16 -1.53 16 5 C -0.15 -1.49 6.64 -25.21 -0.17 -1.66 16 6 C 0.08 1.11 3.71 -26.16 -0.10 1.02 16 7 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 8 C 0.07 1.23 4.93 37.16 0.18 1.42 16 9 O -0.36 -7.84 9.48 -42.75 -0.41 -8.25 16 10 C 0.51 12.68 7.84 34.41 0.27 12.95 16 11 O -0.52 -13.93 13.29 -19.29 -0.26 -14.19 16 12 C -0.26 -6.67 5.92 -104.39 -0.62 -7.29 16 13 C -0.03 -0.77 9.60 -39.20 -0.38 -1.14 16 14 C -0.25 -5.69 10.03 -39.37 -0.39 -6.08 16 15 C -0.09 -2.05 10.01 -39.59 -0.40 -2.44 16 16 C -0.16 -4.01 8.66 -38.88 -0.34 -4.34 16 17 C 0.15 3.98 5.55 -106.53 -0.59 3.39 16 18 C -0.42 -11.48 7.87 -37.82 -0.30 -11.78 16 19 H 0.11 3.11 5.64 -52.48 -0.30 2.82 16 20 C 0.07 1.80 5.17 -17.30 -0.09 1.71 16 21 N -0.78 -19.89 11.07 55.57 0.62 -19.28 16 22 Si 0.92 19.15 29.59 -169.99 -5.03 14.12 16 23 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 24 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 26 O -0.36 -5.51 10.90 -36.27 -0.40 -5.90 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.73 8.06 -51.93 -0.42 0.31 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.79 7.70 -51.93 -0.40 0.40 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 36 H 0.10 2.22 7.61 -52.49 -0.40 1.82 16 37 H 0.09 1.82 8.06 -52.49 -0.42 1.39 16 38 H 0.09 1.86 8.06 -52.48 -0.42 1.43 16 39 H 0.12 3.10 6.38 -52.49 -0.33 2.77 16 40 H 0.29 6.59 8.29 -40.82 -0.34 6.25 16 LS Contribution 334.88 15.07 5.05 5.05 Total: -1.00 -30.46 334.88 -8.88 -39.34 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -5.63 Total: 5.30 kcal Atomic # 6 Polarization: -13.36 SS G_CDS: -2.82 Total: -16.18 kcal Atomic # 7 Polarization: -19.89 SS G_CDS: 0.62 Total: -19.28 kcal Atomic # 8 Polarization: -27.28 SS G_CDS: -1.06 Total: -28.34 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.12 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.46 -8.88 -39.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789017880.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.299 kcal (2) G-P(sol) polarization free energy of solvation -30.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds