Wall clock time and date at job start Tue Mar 31 2020 06:19:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 110.55063 * 2 1 4 4 C 1.54993 * 110.61517 * 237.12092 * 2 1 3 5 5 C 1.54810 * 102.09272 * 204.47774 * 4 2 1 6 6 C 1.54095 * 104.18530 * 20.88022 * 5 4 2 7 7 H 1.09006 * 109.87691 * 242.45405 * 6 5 4 8 8 C 1.53005 * 109.88021 * 121.45474 * 6 5 4 9 9 O 1.45198 * 109.47150 * 175.30205 * 8 6 5 10 10 C 1.34809 * 116.99706 * 179.97438 * 9 8 6 11 11 O 1.21528 * 120.00210 * 0.02562 * 10 9 8 12 12 C 1.47284 * 119.99611 * 180.02562 * 10 9 8 13 13 C 1.39292 * 120.29092 * 5.65049 * 12 10 9 14 14 C 1.38202 * 120.08401 * 179.69456 * 13 12 10 15 15 C 1.38834 * 120.68322 * 0.61064 * 14 13 12 16 16 C 1.37602 * 120.58652 * 359.66731 * 15 14 13 17 17 C 1.40710 * 119.88131 * 0.02585 * 16 15 14 18 18 C 1.40867 * 120.32800 * 179.97438 * 17 16 15 19 19 H 1.08004 * 119.99889 * 208.88499 * 18 17 16 20 20 C 1.40293 * 120.00085 * 28.88555 * 18 17 16 21 21 N 1.30618 * 120.00008 * 14.74717 * 20 18 17 22 22 Si 1.86797 * 120.00079 * 194.75021 * 20 18 17 23 23 H 1.48502 * 109.46911 * 60.00015 * 22 20 18 24 24 H 1.48499 * 109.47353 * 179.97438 * 22 20 18 25 25 H 1.48492 * 109.47189 * 300.00339 * 22 20 18 26 26 O 1.43744 * 107.42269 * 1.95408 * 6 5 4 27 27 H 1.08995 * 109.47724 * 182.87858 * 1 2 3 28 28 H 1.09007 * 109.47223 * 302.88017 * 1 2 3 29 29 H 1.09006 * 109.47477 * 62.87714 * 1 2 3 30 30 H 1.08998 * 110.91097 * 86.27835 * 4 2 1 31 31 H 1.09001 * 110.94009 * 322.68761 * 4 2 1 32 32 H 1.09003 * 110.48724 * 262.20608 * 5 4 2 33 33 H 1.09003 * 110.60391 * 139.61118 * 5 4 2 34 34 H 1.08994 * 109.46995 * 295.30679 * 8 6 5 35 35 H 1.09008 * 109.46676 * 55.30279 * 8 6 5 36 36 H 1.07997 * 119.95376 * 359.97438 * 13 12 10 37 37 H 1.08001 * 119.65732 * 180.27385 * 14 13 12 38 38 H 1.08004 * 119.71137 * 179.69556 * 15 14 13 39 39 H 1.07998 * 120.05760 * 180.02562 * 16 15 14 40 40 H 0.97000 * 120.00284 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9126 1.0206 0.0000 4 6 2.0757 -0.7875 -1.2183 5 6 3.4794 -1.2157 -0.7254 6 6 3.3838 -1.1267 0.8100 7 1 4.0872 -0.3820 1.1826 8 6 3.6933 -2.4906 1.4305 9 8 3.7101 -2.3715 2.8775 10 6 3.9695 -3.4919 3.5809 11 8 4.1763 -4.5394 3.0005 12 6 4.0022 -3.4464 5.0526 13 6 3.6514 -2.2794 5.7274 14 6 3.6775 -2.2434 7.1087 15 6 4.0635 -3.3591 7.8394 16 6 4.4211 -4.5246 7.2012 17 6 4.3971 -4.5901 5.7959 18 6 4.7618 -5.7783 5.1329 19 1 5.1909 -5.7343 4.1427 20 6 4.5676 -7.0188 5.7587 21 7 3.7992 -7.1060 6.8114 22 14 5.4078 -8.5457 5.0866 23 1 6.8802 -8.3547 5.1179 24 1 5.0436 -9.7190 5.9209 25 1 4.9683 -8.7772 3.6873 26 8 2.0396 -0.7353 1.1356 27 1 -0.3634 -1.0263 0.0516 28 1 -0.3634 0.5579 0.8631 29 1 -0.3634 0.4685 -0.9147 30 1 2.1508 -0.1445 -2.0952 31 1 1.4550 -1.6585 -1.4289 32 1 4.2406 -0.5316 -1.1005 33 1 3.6997 -2.2373 -1.0353 34 1 2.9273 -3.2070 1.1338 35 1 4.6673 -2.8353 1.0830 36 1 3.3544 -1.4031 5.1706 37 1 3.3999 -1.3363 7.6250 38 1 4.0829 -3.3120 8.9182 39 1 4.7196 -5.3874 7.7780 40 1 3.6646 -7.9637 7.2440 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789017880.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:24 Heat of formation + Delta-G solvation = -138.969323 kcal Electronic energy + Delta-G solvation = -22776.652788 eV Core-core repulsion = 19327.063482 eV Total energy + Delta-G solvation = -3449.589306 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.27962 -40.43057 -39.02128 -37.08338 -35.68113 -33.34207 -33.24352 -31.97213 -31.48629 -29.25765 -27.47258 -25.32949 -24.01100 -22.88613 -22.30261 -22.02233 -21.36215 -19.41653 -18.44513 -17.80351 -17.54535 -17.28453 -16.98991 -16.28892 -16.07353 -15.83468 -15.23225 -14.88556 -14.70062 -14.47168 -14.19160 -14.06687 -13.56801 -13.46494 -13.25949 -12.93201 -12.86169 -12.80744 -12.64885 -12.58170 -12.35837 -12.23349 -12.00826 -11.82234 -11.68198 -11.54142 -11.46126 -11.16424 -10.68084 -10.63617 -9.52814 -9.39476 -8.80300 -6.47883 0.33246 0.98483 1.33178 1.45173 1.51570 1.95024 2.02199 2.16723 2.67106 2.78047 3.53233 3.63446 3.67342 3.89194 3.97731 4.06808 4.24412 4.31763 4.39332 4.40775 4.46588 4.52340 4.59961 4.68817 4.82405 4.89376 4.89663 5.02134 5.04178 5.08612 5.18179 5.19639 5.25975 5.27632 5.49671 5.62630 5.80903 5.97026 6.01575 6.06608 6.27162 6.59983 6.75565 6.86190 7.24220 8.16134 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018472 B = 0.004122 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1515.484335 B = 6790.641892 C = 7831.405935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.056 3.944 3 H 0.084 0.916 4 C -0.143 4.143 5 C -0.144 4.144 6 C 0.082 3.918 7 H 0.083 0.917 8 C 0.064 3.936 9 O -0.363 6.363 10 C 0.503 3.497 11 O -0.548 6.548 12 C -0.285 4.285 13 C -0.037 4.037 14 C -0.244 4.244 15 C -0.081 4.081 16 C -0.180 4.180 17 C 0.118 3.882 18 C -0.456 4.456 19 H 0.091 0.909 20 C 0.035 3.965 21 N -0.802 5.802 22 Si 0.984 3.016 23 H -0.254 1.254 24 H -0.255 1.255 25 H -0.270 1.270 26 O -0.396 6.396 27 H 0.050 0.950 28 H 0.056 0.944 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.055 0.945 35 H 0.083 0.917 36 H 0.120 0.880 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.111 0.889 40 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.832 10.627 -12.073 16.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.001 4.001 3 H 0.102 0.898 4 C -0.181 4.181 5 C -0.181 4.181 6 C 0.024 3.976 7 H 0.100 0.900 8 C -0.010 4.010 9 O -0.281 6.281 10 C 0.356 3.644 11 O -0.442 6.442 12 C -0.288 4.288 13 C -0.055 4.055 14 C -0.263 4.263 15 C -0.100 4.100 16 C -0.199 4.199 17 C 0.114 3.886 18 C -0.483 4.483 19 H 0.109 0.891 20 C -0.183 4.183 21 N -0.427 5.427 22 Si 0.804 3.196 23 H -0.178 1.178 24 H -0.179 1.179 25 H -0.195 1.195 26 O -0.317 6.317 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.116 0.884 30 H 0.129 0.871 31 H 0.092 0.908 32 H 0.126 0.874 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.138 0.862 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.129 0.871 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.007 10.135 -11.903 15.761 hybrid contribution 0.267 -0.969 -0.262 1.039 sum -1.740 9.165 -12.164 15.330 Atomic orbital electron populations 1.21802 0.92561 1.02465 1.03429 1.23494 0.96000 0.95909 0.84677 0.89805 1.23188 0.95061 1.01084 0.98729 1.22953 0.99619 1.04365 0.91193 1.22828 0.85492 0.93453 0.95794 0.89964 1.23380 1.01928 0.98582 0.77125 1.86590 1.83006 1.37172 1.21310 1.21411 0.73059 0.80782 0.89192 1.90664 1.49366 1.31871 1.72304 1.19050 1.22603 0.99263 0.87835 1.21097 0.94148 0.95312 0.94943 1.20786 1.12862 0.99552 0.93122 1.21232 0.96442 0.92780 0.99540 1.21325 1.06913 0.97901 0.93789 1.17808 0.86654 0.91532 0.92563 1.20423 1.33430 0.91143 1.03276 0.89083 1.26962 0.93413 1.04053 0.93906 1.69737 1.26351 1.29364 1.17234 0.85232 0.79705 0.75655 0.79036 1.17834 1.17850 1.19460 1.89055 1.27904 1.74038 1.40671 0.93080 0.92481 0.88388 0.87076 0.90792 0.87374 0.89838 0.92639 0.89865 0.86167 0.85014 0.85485 0.87070 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.66 71.98 0.70 -1.87 16 2 C 0.06 1.12 3.97 31.28 0.12 1.24 16 3 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 4 C -0.14 -2.22 6.59 31.89 0.21 -2.01 16 5 C -0.14 -2.55 6.64 31.58 0.21 -2.34 16 6 C 0.08 2.21 3.71 30.97 0.11 2.33 16 7 H 0.08 2.10 8.14 -2.38 -0.02 2.08 16 8 C 0.06 2.25 4.93 71.98 0.35 2.61 16 9 O -0.36 -16.14 9.48 -55.34 -0.52 -16.66 16 10 C 0.50 26.28 7.84 70.20 0.55 26.83 16 11 O -0.55 -30.83 13.29 19.74 0.26 -30.57 16 12 C -0.28 -15.27 5.92 -19.71 -0.12 -15.38 16 13 C -0.04 -1.71 9.60 22.52 0.22 -1.50 16 14 C -0.24 -10.43 10.03 22.40 0.22 -10.20 16 15 C -0.08 -3.64 10.01 22.26 0.22 -3.42 16 16 C -0.18 -9.40 8.66 22.72 0.20 -9.21 16 17 C 0.12 6.69 5.55 -21.10 -0.12 6.57 16 18 C -0.46 -26.24 7.87 23.41 0.18 -26.06 16 19 H 0.09 5.46 5.64 -2.91 -0.02 5.44 16 20 C 0.03 1.80 5.17 85.37 0.44 2.25 16 21 N -0.80 -41.81 11.07 21.88 0.24 -41.57 16 22 Si 0.98 39.97 29.59 68.60 2.03 42.00 16 23 H -0.25 -9.95 7.11 99.48 0.71 -9.25 16 24 H -0.25 -9.32 7.11 99.48 0.71 -8.62 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 O -0.40 -12.07 10.90 -147.99 -1.61 -13.68 16 27 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 29 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.11 1.05 8.14 -2.39 -0.02 1.04 16 31 H 0.07 1.23 8.06 -2.39 -0.02 1.21 16 32 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 1.48 7.70 -2.39 -0.02 1.46 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.08 2.73 8.14 -2.38 -0.02 2.71 16 36 H 0.12 5.08 7.61 -2.91 -0.02 5.06 16 37 H 0.13 4.60 8.06 -2.91 -0.02 4.57 16 38 H 0.13 4.73 8.06 -2.91 -0.02 4.70 16 39 H 0.11 5.89 6.38 -2.91 -0.02 5.87 16 40 H 0.30 13.73 8.29 -92.71 -0.77 12.96 16 Total: -1.00 -68.95 334.88 4.94 -64.00 By element: Atomic # 1 Polarization: 25.61 SS G_CDS: 1.04 Total: 26.64 kcal Atomic # 6 Polarization: -33.68 SS G_CDS: 3.51 Total: -30.16 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: 0.24 Total: -41.57 kcal Atomic # 8 Polarization: -59.04 SS G_CDS: -1.88 Total: -60.91 kcal Atomic # 14 Polarization: 39.97 SS G_CDS: 2.03 Total: 42.00 kcal Total: -68.95 4.94 -64.00 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789017880.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.967 kcal (2) G-P(sol) polarization free energy of solvation -68.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -138.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds