Wall clock time and date at job start Tue Mar 31 2020 06:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.27261 * 2 1 4 4 C 1.54948 * 110.30898 * 122.09209 * 2 1 3 5 5 C 1.55301 * 100.94115 * 155.45715 * 4 2 1 6 6 C 1.54384 * 102.25472 * 325.87157 * 5 4 2 7 7 H 1.09004 * 109.82526 * 261.75492 * 6 5 4 8 8 C 1.52999 * 109.83361 * 140.87297 * 6 5 4 9 9 O 1.45197 * 109.46994 * 174.99998 * 8 6 5 10 10 C 1.34806 * 117.00004 * 179.97438 * 9 8 6 11 11 O 1.21530 * 119.99550 * 359.97438 * 10 9 8 12 12 C 1.47282 * 120.00225 * 179.97438 * 10 9 8 13 13 C 1.39289 * 120.28888 * 354.20742 * 12 10 9 14 14 C 1.38199 * 120.08997 * 179.97438 * 13 12 10 15 15 C 1.38838 * 120.68243 * 0.02562 * 14 13 12 16 16 C 1.37608 * 120.58149 * 359.97438 * 15 14 13 17 17 C 1.40709 * 119.88531 * 359.97438 * 16 15 14 18 18 C 1.40857 * 120.32945 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00152 * 145.84176 * 18 17 16 20 20 C 1.40300 * 119.99947 * 325.84035 * 18 17 16 21 21 N 1.30607 * 119.99932 * 350.75917 * 20 18 17 22 22 Si 1.86801 * 119.99480 * 170.75353 * 20 18 17 23 23 H 1.48507 * 109.47074 * 90.00698 * 22 20 18 24 24 H 1.48498 * 109.46862 * 209.99854 * 22 20 18 25 25 H 1.48498 * 109.47516 * 330.00270 * 22 20 18 26 26 O 1.43234 * 107.58935 * 21.35124 * 6 5 4 27 27 H 1.09004 * 109.46986 * 297.91021 * 1 2 3 28 28 H 1.09002 * 109.46835 * 57.90608 * 1 2 3 29 29 H 1.08998 * 109.47376 * 177.90853 * 1 2 3 30 30 H 1.08994 * 111.12193 * 37.53709 * 4 2 1 31 31 H 1.09000 * 111.12593 * 273.38005 * 4 2 1 32 32 H 1.08993 * 110.85043 * 207.67811 * 5 4 2 33 33 H 1.09007 * 110.84235 * 84.05747 * 5 4 2 34 34 H 1.08998 * 109.47113 * 54.99169 * 8 6 5 35 35 H 1.09007 * 109.46565 * 294.99392 * 8 6 5 36 36 H 1.08002 * 119.95859 * 0.02562 * 13 12 10 37 37 H 1.07998 * 119.65949 * 180.02562 * 14 13 12 38 38 H 1.07995 * 119.71222 * 179.70255 * 15 14 13 39 39 H 1.07993 * 120.05659 * 179.97438 * 16 15 14 40 40 H 0.97004 * 119.99476 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7720 1.2311 5 6 3.4709 -1.1997 0.7210 6 6 3.2139 -1.4398 -0.7823 7 1 3.0682 -2.5042 -0.9670 8 6 4.4018 -0.9290 -1.6001 9 8 4.2061 -1.2643 -2.9992 10 6 5.1697 -0.8818 -3.8608 11 8 6.1464 -0.2841 -3.4537 12 6 5.0389 -1.1883 -5.2954 13 6 3.9848 -1.9759 -5.7523 14 6 3.8657 -2.2605 -7.0994 15 6 4.7896 -1.7690 -8.0117 16 6 5.8418 -0.9882 -7.5910 17 6 5.9857 -0.6825 -6.2250 18 6 7.0588 0.1163 -5.7841 19 1 6.9233 0.7910 -4.9518 20 6 8.3036 0.0354 -6.4262 21 7 8.5234 -0.9019 -7.3088 22 14 9.6464 1.2684 -6.0188 23 1 10.4704 0.7503 -4.8971 24 1 10.5073 1.4747 -7.2111 25 1 9.0293 2.5601 -5.6242 26 8 2.0306 -0.7164 -1.1400 27 1 -0.3633 0.4811 0.9082 28 1 -0.3633 0.5460 -0.8706 29 1 -0.3634 -1.0269 -0.0375 30 1 1.4480 -1.6412 1.4511 31 1 2.1480 -0.1189 2.1001 32 1 3.7984 -2.1171 1.2099 33 1 4.1972 -0.4001 0.8674 34 1 5.3186 -1.3954 -1.2394 35 1 4.4781 0.1531 -1.4930 36 1 3.2590 -2.3640 -5.0529 37 1 3.0454 -2.8715 -7.4461 38 1 4.6842 -2.0051 -9.0603 39 1 6.5557 -0.6107 -8.3079 40 1 9.3842 -0.9580 -7.7525 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789017884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:27 Heat of formation + Delta-G solvation = -123.396431 kcal Electronic energy + Delta-G solvation = -22778.105747 eV Core-core repulsion = 19329.191732 eV Total energy + Delta-G solvation = -3448.914015 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.87055 -39.04925 -37.18638 -35.24276 -33.72249 -32.41849 -32.24472 -30.10436 -29.62759 -28.10734 -25.56207 -24.14733 -22.39500 -21.65073 -21.01918 -20.62693 -19.54098 -17.45516 -17.14587 -16.57428 -16.03291 -15.68322 -15.28087 -15.01380 -14.42553 -14.20315 -13.86361 -13.46049 -13.30584 -12.85467 -12.81208 -12.57424 -12.30753 -12.16856 -11.86358 -11.68357 -11.60249 -11.34607 -11.13534 -11.07852 -10.97264 -10.90727 -10.67506 -10.58713 -10.16143 -9.84587 -9.69262 -9.48312 -9.31420 -8.75401 -7.61634 -7.40166 -6.86080 -4.46465 2.24775 2.81990 3.06569 3.13697 3.22127 3.47763 3.77740 3.92478 3.95583 4.31131 4.56883 4.62527 4.72238 4.99665 5.06703 5.21495 5.32665 5.38639 5.47303 5.50548 5.55919 5.59575 5.70326 5.76704 5.90339 6.02793 6.09080 6.16945 6.21621 6.39725 6.61975 6.96147 7.07926 7.08584 7.16845 7.37308 7.50539 7.65895 7.92689 7.96729 8.16617 8.59081 8.73551 8.81559 9.14287 10.08738 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018775 B = 0.004123 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.977838 B = 6788.838717 C = 7883.612063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.069 3.931 3 H 0.069 0.931 4 C -0.150 4.150 5 C -0.149 4.149 6 C 0.085 3.915 7 H 0.089 0.911 8 C 0.060 3.940 9 O -0.360 6.360 10 C 0.505 3.495 11 O -0.519 6.519 12 C -0.249 4.249 13 C -0.036 4.036 14 C -0.248 4.248 15 C -0.090 4.090 16 C -0.150 4.150 17 C 0.148 3.852 18 C -0.418 4.418 19 H 0.104 0.896 20 C 0.070 3.930 21 N -0.788 5.788 22 Si 0.919 3.081 23 H -0.267 1.267 24 H -0.276 1.276 25 H -0.259 1.259 26 O -0.362 6.362 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.080 0.920 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.120 0.880 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.810 0.042 12.374 15.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.012 3.988 3 H 0.087 0.913 4 C -0.188 4.188 5 C -0.187 4.187 6 C 0.027 3.973 7 H 0.107 0.893 8 C -0.015 4.015 9 O -0.279 6.279 10 C 0.355 3.645 11 O -0.410 6.410 12 C -0.252 4.252 13 C -0.054 4.054 14 C -0.267 4.267 15 C -0.109 4.109 16 C -0.169 4.169 17 C 0.145 3.855 18 C -0.446 4.446 19 H 0.122 0.878 20 C -0.149 4.149 21 N -0.412 5.412 22 Si 0.743 3.257 23 H -0.192 1.192 24 H -0.201 1.201 25 H -0.182 1.182 26 O -0.281 6.281 27 H 0.085 0.915 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.121 0.879 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.137 0.863 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -8.427 0.133 12.167 14.801 hybrid contribution 0.926 0.392 0.415 1.088 sum -7.501 0.525 12.582 14.658 Atomic orbital electron populations 1.21867 0.93749 1.02833 1.02247 1.22999 0.94958 0.95785 0.85085 0.91339 1.23317 0.95982 1.00946 0.98529 1.23102 0.98123 1.03157 0.94292 1.22766 0.84962 0.97097 0.92491 0.89275 1.23186 0.97223 1.00724 0.80342 1.86629 1.48563 1.75119 1.17566 1.21406 0.79644 0.76220 0.87187 1.90720 1.30997 1.40181 1.79077 1.18781 1.05548 1.13288 0.87572 1.20853 0.95015 0.94512 0.95051 1.20362 1.02817 1.10144 0.93381 1.20860 0.95097 0.97395 0.97507 1.21302 0.97783 1.02245 0.95578 1.17452 0.89955 0.87818 0.90323 1.20195 0.93564 1.18003 1.12847 0.87796 1.26135 1.00589 0.95267 0.92878 1.69707 1.24531 1.27301 1.19708 0.86126 0.79622 0.81253 0.78697 1.19237 1.20141 1.18239 1.88588 1.41541 1.64532 1.33440 0.91477 0.91752 0.91904 0.90181 0.89926 0.89515 0.90033 0.91002 0.91639 0.87868 0.88800 0.88860 0.86261 0.90522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.62 37.16 0.36 -1.02 16 2 C 0.07 0.76 4.07 -25.70 -0.10 0.66 16 3 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 4 C -0.15 -1.28 6.57 -24.48 -0.16 -1.44 16 5 C -0.15 -1.45 6.54 -24.79 -0.16 -1.61 16 6 C 0.08 1.16 3.82 -26.01 -0.10 1.06 16 7 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 8 C 0.06 1.03 5.01 37.16 0.19 1.22 16 9 O -0.36 -7.78 9.48 -42.80 -0.41 -8.19 16 10 C 0.50 12.65 7.84 34.41 0.27 12.92 16 11 O -0.52 -13.88 13.39 -19.29 -0.26 -14.14 16 12 C -0.25 -6.48 5.92 -104.39 -0.62 -7.10 16 13 C -0.04 -0.84 9.60 -39.20 -0.38 -1.22 16 14 C -0.25 -5.52 10.03 -39.37 -0.39 -5.91 16 15 C -0.09 -2.06 10.01 -39.59 -0.40 -2.46 16 16 C -0.15 -3.85 8.62 -38.88 -0.34 -4.19 16 17 C 0.15 4.06 5.51 -106.53 -0.59 3.47 16 18 C -0.42 -11.57 7.67 -37.82 -0.29 -11.86 16 19 H 0.10 2.96 5.93 -52.48 -0.31 2.65 16 20 C 0.07 1.80 5.25 -17.30 -0.09 1.71 16 21 N -0.79 -20.30 11.14 55.57 0.62 -19.68 16 22 Si 0.92 19.47 29.57 -169.99 -5.03 14.45 16 23 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 24 H -0.28 -5.55 7.11 56.52 0.40 -5.15 16 25 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 26 O -0.36 -5.49 10.70 -36.41 -0.39 -5.88 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.62 8.06 -51.93 -0.42 0.21 16 31 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.08 0.77 7.85 -51.92 -0.41 0.36 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 36 H 0.10 2.20 7.62 -52.49 -0.40 1.81 16 37 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.12 3.08 6.59 -52.49 -0.35 2.74 16 40 H 0.28 6.61 8.29 -40.82 -0.34 6.27 16 LS Contribution 335.41 15.07 5.05 5.05 Total: -1.00 -30.56 335.41 -8.88 -39.43 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -5.67 Total: 4.70 kcal Atomic # 6 Polarization: -12.95 SS G_CDS: -2.80 Total: -15.76 kcal Atomic # 7 Polarization: -20.30 SS G_CDS: 0.62 Total: -19.68 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -1.05 Total: -28.20 kcal Atomic # 14 Polarization: 19.47 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.56 -8.88 -39.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789017884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.964 kcal (2) G-P(sol) polarization free energy of solvation -30.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds