Wall clock time and date at job start Tue Mar 31 2020 06:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09004 * 110.27261 * 2 1 4 4 C 1.54948 * 110.30898 * 122.09209 * 2 1 3 5 5 C 1.55301 * 100.94115 * 155.45715 * 4 2 1 6 6 C 1.54384 * 102.25472 * 325.87157 * 5 4 2 7 7 H 1.09004 * 109.82526 * 261.75492 * 6 5 4 8 8 C 1.52999 * 109.83361 * 140.87297 * 6 5 4 9 9 O 1.45197 * 109.46994 * 174.99998 * 8 6 5 10 10 C 1.34806 * 117.00004 * 179.97438 * 9 8 6 11 11 O 1.21530 * 119.99550 * 359.97438 * 10 9 8 12 12 C 1.47282 * 120.00225 * 179.97438 * 10 9 8 13 13 C 1.39289 * 120.28888 * 354.20742 * 12 10 9 14 14 C 1.38199 * 120.08997 * 179.97438 * 13 12 10 15 15 C 1.38838 * 120.68243 * 0.02562 * 14 13 12 16 16 C 1.37608 * 120.58149 * 359.97438 * 15 14 13 17 17 C 1.40709 * 119.88531 * 359.97438 * 16 15 14 18 18 C 1.40857 * 120.32945 * 180.02562 * 17 16 15 19 19 H 1.08003 * 120.00152 * 145.84176 * 18 17 16 20 20 C 1.40300 * 119.99947 * 325.84035 * 18 17 16 21 21 N 1.30607 * 119.99932 * 350.75917 * 20 18 17 22 22 Si 1.86801 * 119.99480 * 170.75353 * 20 18 17 23 23 H 1.48507 * 109.47074 * 90.00698 * 22 20 18 24 24 H 1.48498 * 109.46862 * 209.99854 * 22 20 18 25 25 H 1.48498 * 109.47516 * 330.00270 * 22 20 18 26 26 O 1.43234 * 107.58935 * 21.35124 * 6 5 4 27 27 H 1.09004 * 109.46986 * 297.91021 * 1 2 3 28 28 H 1.09002 * 109.46835 * 57.90608 * 1 2 3 29 29 H 1.08998 * 109.47376 * 177.90853 * 1 2 3 30 30 H 1.08994 * 111.12193 * 37.53709 * 4 2 1 31 31 H 1.09000 * 111.12593 * 273.38005 * 4 2 1 32 32 H 1.08993 * 110.85043 * 207.67811 * 5 4 2 33 33 H 1.09007 * 110.84235 * 84.05747 * 5 4 2 34 34 H 1.08998 * 109.47113 * 54.99169 * 8 6 5 35 35 H 1.09007 * 109.46565 * 294.99392 * 8 6 5 36 36 H 1.08002 * 119.95859 * 0.02562 * 13 12 10 37 37 H 1.07998 * 119.65949 * 180.02562 * 14 13 12 38 38 H 1.07995 * 119.71222 * 179.70255 * 15 14 13 39 39 H 1.07993 * 120.05659 * 179.97438 * 16 15 14 40 40 H 0.97004 * 119.99476 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9077 1.0225 0.0000 4 6 2.0678 -0.7720 1.2311 5 6 3.4709 -1.1997 0.7210 6 6 3.2139 -1.4398 -0.7823 7 1 3.0682 -2.5042 -0.9670 8 6 4.4018 -0.9290 -1.6001 9 8 4.2061 -1.2643 -2.9992 10 6 5.1697 -0.8818 -3.8608 11 8 6.1464 -0.2841 -3.4537 12 6 5.0389 -1.1883 -5.2954 13 6 3.9848 -1.9759 -5.7523 14 6 3.8657 -2.2605 -7.0994 15 6 4.7896 -1.7690 -8.0117 16 6 5.8418 -0.9882 -7.5910 17 6 5.9857 -0.6825 -6.2250 18 6 7.0588 0.1163 -5.7841 19 1 6.9233 0.7910 -4.9518 20 6 8.3036 0.0354 -6.4262 21 7 8.5234 -0.9019 -7.3088 22 14 9.6464 1.2684 -6.0188 23 1 10.4704 0.7503 -4.8971 24 1 10.5073 1.4747 -7.2111 25 1 9.0293 2.5601 -5.6242 26 8 2.0306 -0.7164 -1.1400 27 1 -0.3633 0.4811 0.9082 28 1 -0.3633 0.5460 -0.8706 29 1 -0.3634 -1.0269 -0.0375 30 1 1.4480 -1.6412 1.4511 31 1 2.1480 -0.1189 2.1001 32 1 3.7984 -2.1171 1.2099 33 1 4.1972 -0.4001 0.8674 34 1 5.3186 -1.3954 -1.2394 35 1 4.4781 0.1531 -1.4930 36 1 3.2590 -2.3640 -5.0529 37 1 3.0454 -2.8715 -7.4461 38 1 4.6842 -2.0051 -9.0603 39 1 6.5557 -0.6107 -8.3079 40 1 9.3842 -0.9580 -7.7525 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789017884.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:26 Heat of formation + Delta-G solvation = -139.777410 kcal Electronic energy + Delta-G solvation = -22778.816079 eV Core-core repulsion = 19329.191732 eV Total energy + Delta-G solvation = -3449.624348 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.29647 -40.47297 -39.02993 -37.07748 -35.63402 -33.35258 -33.24627 -31.97506 -31.50098 -29.24397 -27.45638 -25.35540 -24.06928 -22.89551 -22.53352 -21.66019 -21.35517 -19.39515 -18.40336 -18.16353 -17.57326 -17.07422 -17.06695 -16.47881 -16.02641 -15.58349 -15.21366 -14.96938 -14.54425 -14.49952 -14.32171 -13.92754 -13.54394 -13.47295 -13.23901 -12.99384 -12.89124 -12.81974 -12.68757 -12.60334 -12.37776 -12.23495 -11.98373 -11.82129 -11.71846 -11.54693 -11.51112 -11.20407 -10.71188 -10.52870 -9.53151 -9.33977 -8.75936 -6.47824 0.31622 0.97598 1.32744 1.45839 1.48755 1.93110 2.02056 2.17668 2.69864 2.77697 3.49060 3.61546 3.65836 3.81620 4.01823 4.10833 4.22864 4.33760 4.37895 4.40224 4.43079 4.51864 4.60288 4.76526 4.77636 4.86723 4.88420 5.02452 5.04780 5.07335 5.17002 5.23903 5.25472 5.31299 5.49818 5.61507 5.79071 5.98204 6.04526 6.12812 6.26607 6.59953 6.75457 6.85605 7.23105 8.21486 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.018775 B = 0.004123 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.977838 B = 6788.838717 C = 7883.612063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.054 3.946 3 H 0.064 0.936 4 C -0.138 4.138 5 C -0.143 4.143 6 C 0.086 3.914 7 H 0.093 0.907 8 C 0.053 3.947 9 O -0.361 6.361 10 C 0.503 3.497 11 O -0.546 6.546 12 C -0.277 4.277 13 C -0.040 4.040 14 C -0.238 4.238 15 C -0.082 4.082 16 C -0.174 4.174 17 C 0.121 3.879 18 C -0.457 4.457 19 H 0.082 0.918 20 C 0.035 3.965 21 N -0.812 5.812 22 Si 0.983 3.017 23 H -0.268 1.268 24 H -0.252 1.252 25 H -0.263 1.263 26 O -0.396 6.396 27 H 0.093 0.907 28 H 0.050 0.950 29 H 0.062 0.938 30 H 0.092 0.908 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.083 0.917 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.123 0.877 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.109 0.891 40 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.836 -0.701 13.339 16.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.003 4.003 3 H 0.082 0.918 4 C -0.175 4.175 5 C -0.180 4.180 6 C 0.028 3.972 7 H 0.110 0.890 8 C -0.021 4.021 9 O -0.279 6.279 10 C 0.354 3.646 11 O -0.440 6.440 12 C -0.280 4.280 13 C -0.058 4.058 14 C -0.256 4.256 15 C -0.100 4.100 16 C -0.193 4.193 17 C 0.117 3.883 18 C -0.485 4.485 19 H 0.100 0.900 20 C -0.182 4.182 21 N -0.438 5.438 22 Si 0.804 3.196 23 H -0.193 1.193 24 H -0.176 1.176 25 H -0.187 1.187 26 O -0.316 6.316 27 H 0.112 0.888 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.126 0.874 32 H 0.128 0.872 33 H 0.101 0.899 34 H 0.096 0.904 35 H 0.073 0.927 36 H 0.141 0.859 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.127 0.873 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.487 -0.628 13.132 16.213 hybrid contribution 1.076 0.556 0.137 1.219 sum -8.411 -0.071 13.269 15.711 Atomic orbital electron populations 1.21869 0.92427 1.02986 1.03025 1.23303 0.96099 0.95610 0.85258 0.91834 1.23311 0.94794 1.01438 0.97950 1.23137 0.99176 1.04477 0.91253 1.22850 0.83291 0.96791 0.94263 0.88954 1.23617 0.99771 1.00494 0.78258 1.86593 1.47239 1.74542 1.19551 1.21425 0.79715 0.75768 0.87648 1.90688 1.32205 1.41389 1.79674 1.19148 1.06434 1.14192 0.88246 1.21126 0.94562 0.93834 0.96294 1.20833 1.03144 1.09060 0.92596 1.21260 0.93700 0.95518 0.99565 1.21306 0.99147 1.04095 0.94799 1.17820 0.90540 0.88405 0.91512 1.20195 0.95273 1.19399 1.13610 0.89963 1.26853 1.01979 0.96790 0.92574 1.69714 1.25652 1.28128 1.20258 0.85192 0.76843 0.78452 0.79133 1.19294 1.17608 1.18700 1.88554 1.41910 1.65053 1.36082 0.88784 0.93081 0.91850 0.88921 0.87442 0.87165 0.89884 0.90369 0.92664 0.85941 0.84778 0.85338 0.87284 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.62 71.98 0.69 -1.76 16 2 C 0.05 1.13 4.07 31.26 0.13 1.25 16 3 H 0.06 1.35 8.14 -2.38 -0.02 1.33 16 4 C -0.14 -1.95 6.57 32.05 0.21 -1.74 16 5 C -0.14 -2.47 6.54 31.85 0.21 -2.26 16 6 C 0.09 2.29 3.82 31.06 0.12 2.40 16 7 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 8 C 0.05 1.85 5.01 71.98 0.36 2.21 16 9 O -0.36 -15.99 9.48 -55.25 -0.52 -16.51 16 10 C 0.50 26.19 7.84 70.20 0.55 26.74 16 11 O -0.55 -30.72 13.39 19.74 0.26 -30.46 16 12 C -0.28 -14.81 5.92 -19.71 -0.12 -14.93 16 13 C -0.04 -1.84 9.60 22.51 0.22 -1.62 16 14 C -0.24 -9.99 10.03 22.40 0.22 -9.77 16 15 C -0.08 -3.63 10.01 22.26 0.22 -3.41 16 16 C -0.17 -9.08 8.62 22.72 0.20 -8.88 16 17 C 0.12 6.85 5.51 -21.10 -0.12 6.73 16 18 C -0.46 -26.49 7.67 23.41 0.18 -26.31 16 19 H 0.08 4.99 5.93 -2.91 -0.02 4.98 16 20 C 0.03 1.82 5.25 85.38 0.45 2.27 16 21 N -0.81 -42.68 11.14 21.88 0.24 -42.44 16 22 Si 0.98 40.78 29.57 68.60 2.03 42.80 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 24 H -0.25 -9.40 7.11 99.48 0.71 -8.69 16 25 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 26 O -0.40 -11.89 10.70 -147.85 -1.58 -13.47 16 27 H 0.09 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.09 1.11 8.06 -2.39 -0.02 1.10 16 31 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.08 1.42 7.85 -2.38 -0.02 1.40 16 34 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 36 H 0.12 5.07 7.62 -2.91 -0.02 5.05 16 37 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 38 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 39 H 0.11 5.79 6.59 -2.91 -0.02 5.77 16 40 H 0.29 13.78 8.29 -92.70 -0.77 13.01 16 Total: -1.00 -69.18 335.41 4.99 -64.20 By element: Atomic # 1 Polarization: 23.92 SS G_CDS: 1.03 Total: 24.95 kcal Atomic # 6 Polarization: -32.60 SS G_CDS: 3.52 Total: -29.08 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.24 Total: -42.44 kcal Atomic # 8 Polarization: -58.60 SS G_CDS: -1.84 Total: -60.44 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.80 kcal Total: -69.18 4.99 -64.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789017884.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.582 kcal (2) G-P(sol) polarization free energy of solvation -69.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds