Wall clock time and date at job start Tue Mar 31 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.82545 * 2 1 4 4 C 1.54382 * 109.90906 * 239.06502 * 2 1 3 5 5 C 1.55295 * 102.25500 * 219.08430 * 4 2 1 6 6 C 1.54947 * 100.94286 * 34.13631 * 5 4 2 7 7 H 1.08999 * 110.31201 * 82.47055 * 6 5 4 8 8 C 1.53006 * 110.39533 * 204.59515 * 6 5 4 9 9 O 1.45198 * 109.47389 * 182.21272 * 8 6 5 10 10 C 1.34800 * 116.99891 * 180.02562 * 9 8 6 11 11 O 1.21527 * 120.00317 * 359.97438 * 10 9 8 12 12 C 1.47283 * 119.99721 * 180.02562 * 10 9 8 13 13 C 1.39298 * 120.29129 * 357.16361 * 12 10 9 14 14 C 1.38200 * 120.08601 * 179.97438 * 13 12 10 15 15 C 1.38832 * 120.68639 * 0.02804 * 14 13 12 16 16 C 1.37603 * 120.58455 * 359.97208 * 15 14 13 17 17 C 1.40713 * 119.88229 * 359.75078 * 16 15 14 18 18 C 1.40859 * 120.32779 * 180.25515 * 17 16 15 19 19 H 1.08003 * 119.99606 * 214.91577 * 18 17 16 20 20 C 1.40297 * 120.00433 * 34.92245 * 18 17 16 21 21 N 1.30613 * 119.99825 * 9.89910 * 20 18 17 22 22 Si 1.86802 * 119.99961 * 189.90842 * 20 18 17 23 23 H 1.48496 * 109.47120 * 89.99630 * 22 20 18 24 24 H 1.48500 * 109.46652 * 209.99187 * 22 20 18 25 25 H 1.48494 * 109.47102 * 329.99573 * 22 20 18 26 26 O 1.43244 * 109.83411 * 120.88653 * 2 1 3 27 27 H 1.09004 * 109.47132 * 300.69513 * 1 2 3 28 28 H 1.09000 * 109.46932 * 60.70117 * 1 2 3 29 29 H 1.09000 * 109.46977 * 180.70319 * 1 2 3 30 30 H 1.09002 * 110.84343 * 337.27843 * 4 2 1 31 31 H 1.08998 * 110.84539 * 100.89213 * 4 2 1 32 32 H 1.09000 * 111.13142 * 276.21148 * 5 4 2 33 33 H 1.09006 * 111.16183 * 152.06547 * 5 4 2 34 34 H 1.09000 * 109.46810 * 302.21654 * 8 6 5 35 35 H 1.09010 * 109.46803 * 62.20848 * 8 6 5 36 36 H 1.08003 * 119.95121 * 359.96017 * 13 12 10 37 37 H 1.07994 * 119.65610 * 180.02562 * 14 13 12 38 38 H 1.08002 * 119.71251 * 179.97438 * 15 14 13 39 39 H 1.08002 * 120.05920 * 180.02562 * 16 15 14 40 40 H 0.96999 * 120.00113 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 6 2.0557 -0.7462 -1.2451 5 6 3.2755 -1.5200 -0.6750 6 6 2.7765 -1.8426 0.7560 7 1 2.1431 -2.7296 0.7448 8 6 3.9626 -2.0501 1.7001 9 8 3.4738 -2.4022 3.0212 10 6 4.3982 -2.6198 3.9779 11 8 5.5804 -2.5184 3.7148 12 6 3.9756 -2.9815 5.3416 13 6 2.6220 -3.0428 5.6647 14 6 2.2302 -3.3831 6.9455 15 6 3.1741 -3.6667 7.9234 16 6 4.5185 -3.6146 7.6348 17 6 4.9444 -3.2764 6.3371 18 6 6.3182 -3.2255 6.0300 19 1 6.6879 -2.4916 5.3291 20 6 7.2061 -4.1281 6.6343 21 7 6.7436 -5.1340 7.3273 22 14 9.0496 -3.8910 6.4481 23 1 9.5534 -3.0389 7.5550 24 1 9.7256 -5.2125 6.4937 25 1 9.3352 -3.2334 5.1477 26 8 2.0160 -0.6917 1.1564 27 1 -0.3633 0.5246 0.8837 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3633 -1.0276 0.0126 30 1 1.3043 -1.4356 -1.6300 31 1 2.3688 -0.0420 -2.0159 32 1 4.1637 -0.8888 -0.6484 33 1 3.4620 -2.4327 -1.2410 34 1 4.5933 -2.8536 1.3199 35 1 4.5437 -1.1298 1.7610 36 1 1.8778 -2.8238 4.9132 37 1 1.1789 -3.4290 7.1883 38 1 2.8503 -3.9306 8.9194 39 1 5.2455 -3.8372 8.4019 40 1 7.3575 -5.7579 7.7455 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789017887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:29 Heat of formation + Delta-G solvation = -123.171778 kcal Electronic energy + Delta-G solvation = -22760.456918 eV Core-core repulsion = 19311.552645 eV Total energy + Delta-G solvation = -3448.904273 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.85244 -39.07330 -37.19456 -35.25979 -33.72041 -32.40734 -32.21823 -30.09884 -29.63552 -28.12702 -25.56419 -24.14738 -22.38332 -21.64239 -21.02422 -20.63588 -19.55555 -17.46912 -17.15460 -16.55767 -16.11839 -15.52272 -15.24704 -15.06699 -14.42490 -14.22392 -13.77083 -13.62437 -13.25877 -12.99754 -12.79797 -12.56355 -12.24299 -12.13338 -11.87256 -11.69478 -11.60025 -11.31221 -11.18286 -11.05475 -10.96103 -10.93839 -10.61769 -10.58766 -10.17185 -9.85789 -9.68188 -9.50562 -9.32079 -8.70681 -7.61826 -7.39702 -6.87043 -4.47514 2.24128 2.81410 3.06942 3.13822 3.22733 3.50323 3.72563 3.92959 3.95872 4.30739 4.58615 4.62671 4.71792 5.03109 5.06760 5.20394 5.30505 5.39686 5.44052 5.51458 5.56792 5.60545 5.71273 5.78216 5.89899 6.02977 6.09506 6.16680 6.22084 6.39494 6.62120 6.95857 7.07210 7.07961 7.16257 7.36418 7.51115 7.65434 7.91985 7.97083 8.16803 8.60410 8.74597 8.81817 9.15048 10.08314 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019672 B = 0.004087 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.030083 B = 6848.920927 C = 8062.007276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.071 3.929 3 H 0.078 0.922 4 C -0.149 4.149 5 C -0.150 4.150 6 C 0.085 3.915 7 H 0.079 0.921 8 C 0.072 3.928 9 O -0.361 6.361 10 C 0.505 3.495 11 O -0.519 6.519 12 C -0.249 4.249 13 C -0.036 4.036 14 C -0.247 4.247 15 C -0.090 4.090 16 C -0.150 4.150 17 C 0.149 3.851 18 C -0.423 4.423 19 H 0.111 0.889 20 C 0.070 3.930 21 N -0.787 5.787 22 Si 0.917 3.083 23 H -0.266 1.266 24 H -0.277 1.277 25 H -0.257 1.257 26 O -0.362 6.362 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.075 0.925 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.118 0.882 40 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.633 5.262 -12.480 15.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.013 3.987 3 H 0.096 0.904 4 C -0.187 4.187 5 C -0.187 4.187 6 C 0.027 3.973 7 H 0.097 0.903 8 C -0.003 4.003 9 O -0.279 6.279 10 C 0.356 3.644 11 O -0.411 6.411 12 C -0.252 4.252 13 C -0.054 4.054 14 C -0.267 4.267 15 C -0.109 4.109 16 C -0.169 4.169 17 C 0.145 3.855 18 C -0.451 4.451 19 H 0.128 0.872 20 C -0.149 4.149 21 N -0.412 5.412 22 Si 0.741 3.259 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.180 1.180 26 O -0.282 6.282 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.097 0.903 31 H 0.100 0.900 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.122 0.878 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.136 0.864 40 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.242 5.148 -12.253 14.683 hybrid contribution 0.859 -0.174 -0.345 0.942 sum -5.382 4.974 -12.598 14.574 Atomic orbital electron populations 1.22134 0.94992 1.02632 1.02145 1.22736 0.94407 0.96438 0.85093 0.90446 1.23178 0.97681 0.99716 0.98124 1.23242 0.98865 1.01547 0.95087 1.23008 0.92179 0.90085 0.92029 0.90282 1.22893 0.94883 1.00971 0.81570 1.86623 1.40582 1.81533 1.19207 1.21379 0.83493 0.74248 0.85296 1.90703 1.18220 1.50059 1.82083 1.18767 0.93803 1.23143 0.89464 1.20864 0.94280 0.94691 0.95563 1.20361 0.97416 1.14372 0.94512 1.20854 0.93868 0.98726 0.97409 1.21284 0.94171 1.04856 0.96555 1.17459 0.92453 0.86085 0.89489 1.20362 0.91435 1.13474 1.19830 0.87184 1.26170 1.02275 0.94039 0.92438 1.69713 1.38100 1.09657 1.23706 0.86148 0.80866 0.78600 0.80319 1.19145 1.20210 1.18048 1.88598 1.70335 1.39992 1.29272 0.91792 0.91807 0.92155 0.90300 0.90006 0.89904 0.89477 0.90635 0.91329 0.87827 0.88797 0.88866 0.86436 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.51 9.45 37.16 0.35 -1.16 16 2 C 0.07 0.77 4.15 -26.01 -0.11 0.66 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 4 C -0.15 -1.26 6.55 -24.79 -0.16 -1.42 16 5 C -0.15 -1.47 6.57 -24.49 -0.16 -1.63 16 6 C 0.08 1.16 3.73 -25.70 -0.10 1.06 16 7 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 8 C 0.07 1.23 5.19 37.16 0.19 1.42 16 9 O -0.36 -7.78 9.47 -42.59 -0.40 -8.18 16 10 C 0.50 12.61 7.86 34.41 0.27 12.88 16 11 O -0.52 -13.83 13.30 -19.28 -0.26 -14.09 16 12 C -0.25 -6.46 5.92 -104.39 -0.62 -7.08 16 13 C -0.04 -0.83 9.60 -39.20 -0.38 -1.21 16 14 C -0.25 -5.50 10.03 -39.38 -0.39 -5.89 16 15 C -0.09 -2.06 10.01 -39.59 -0.40 -2.45 16 16 C -0.15 -3.83 8.62 -38.88 -0.34 -4.17 16 17 C 0.15 4.07 5.49 -106.53 -0.59 3.48 16 18 C -0.42 -11.67 7.78 -37.82 -0.29 -11.96 16 19 H 0.11 3.13 5.72 -52.48 -0.30 2.83 16 20 C 0.07 1.79 5.24 -17.30 -0.09 1.70 16 21 N -0.79 -20.24 11.23 55.57 0.62 -19.61 16 22 Si 0.92 19.35 29.57 -169.99 -5.03 14.33 16 23 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 24 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 25 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 26 O -0.36 -5.49 10.70 -36.00 -0.39 -5.88 16 27 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.08 0.59 7.85 -51.93 -0.41 0.19 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.79 8.06 -51.93 -0.42 0.38 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.07 1.19 8.14 -51.92 -0.42 0.77 16 36 H 0.10 2.22 7.60 -52.48 -0.40 1.82 16 37 H 0.09 1.81 8.06 -52.49 -0.42 1.39 16 38 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 39 H 0.12 3.03 6.68 -52.49 -0.35 2.68 16 40 H 0.28 6.59 8.29 -40.82 -0.34 6.26 16 LS Contribution 335.38 15.07 5.05 5.05 Total: -1.00 -30.38 335.38 -8.86 -39.24 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -5.66 Total: 4.91 kcal Atomic # 6 Polarization: -12.96 SS G_CDS: -2.80 Total: -15.77 kcal Atomic # 7 Polarization: -20.24 SS G_CDS: 0.62 Total: -19.61 kcal Atomic # 8 Polarization: -27.10 SS G_CDS: -1.04 Total: -28.15 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.38 -8.86 -39.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789017887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.937 kcal (2) G-P(sol) polarization free energy of solvation -30.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds