Wall clock time and date at job start Tue Mar 31 2020 06:19:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.82545 * 2 1 4 4 C 1.54382 * 109.90906 * 239.06502 * 2 1 3 5 5 C 1.55295 * 102.25500 * 219.08430 * 4 2 1 6 6 C 1.54947 * 100.94286 * 34.13631 * 5 4 2 7 7 H 1.08999 * 110.31201 * 82.47055 * 6 5 4 8 8 C 1.53006 * 110.39533 * 204.59515 * 6 5 4 9 9 O 1.45198 * 109.47389 * 182.21272 * 8 6 5 10 10 C 1.34800 * 116.99891 * 180.02562 * 9 8 6 11 11 O 1.21527 * 120.00317 * 359.97438 * 10 9 8 12 12 C 1.47283 * 119.99721 * 180.02562 * 10 9 8 13 13 C 1.39298 * 120.29129 * 357.16361 * 12 10 9 14 14 C 1.38200 * 120.08601 * 179.97438 * 13 12 10 15 15 C 1.38832 * 120.68639 * 0.02804 * 14 13 12 16 16 C 1.37603 * 120.58455 * 359.97208 * 15 14 13 17 17 C 1.40713 * 119.88229 * 359.75078 * 16 15 14 18 18 C 1.40859 * 120.32779 * 180.25515 * 17 16 15 19 19 H 1.08003 * 119.99606 * 214.91577 * 18 17 16 20 20 C 1.40297 * 120.00433 * 34.92245 * 18 17 16 21 21 N 1.30613 * 119.99825 * 9.89910 * 20 18 17 22 22 Si 1.86802 * 119.99961 * 189.90842 * 20 18 17 23 23 H 1.48496 * 109.47120 * 89.99630 * 22 20 18 24 24 H 1.48500 * 109.46652 * 209.99187 * 22 20 18 25 25 H 1.48494 * 109.47102 * 329.99573 * 22 20 18 26 26 O 1.43244 * 109.83411 * 120.88653 * 2 1 3 27 27 H 1.09004 * 109.47132 * 300.69513 * 1 2 3 28 28 H 1.09000 * 109.46932 * 60.70117 * 1 2 3 29 29 H 1.09000 * 109.46977 * 180.70319 * 1 2 3 30 30 H 1.09002 * 110.84343 * 337.27843 * 4 2 1 31 31 H 1.08998 * 110.84539 * 100.89213 * 4 2 1 32 32 H 1.09000 * 111.13142 * 276.21148 * 5 4 2 33 33 H 1.09006 * 111.16183 * 152.06547 * 5 4 2 34 34 H 1.09000 * 109.46810 * 302.21654 * 8 6 5 35 35 H 1.09010 * 109.46803 * 62.20848 * 8 6 5 36 36 H 1.08003 * 119.95121 * 359.96017 * 13 12 10 37 37 H 1.07994 * 119.65610 * 180.02562 * 14 13 12 38 38 H 1.08002 * 119.71251 * 179.97438 * 15 14 13 39 39 H 1.08002 * 120.05920 * 180.02562 * 16 15 14 40 40 H 0.96999 * 120.00113 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 6 2.0557 -0.7462 -1.2451 5 6 3.2755 -1.5200 -0.6750 6 6 2.7765 -1.8426 0.7560 7 1 2.1431 -2.7296 0.7448 8 6 3.9626 -2.0501 1.7001 9 8 3.4738 -2.4022 3.0212 10 6 4.3982 -2.6198 3.9779 11 8 5.5804 -2.5184 3.7148 12 6 3.9756 -2.9815 5.3416 13 6 2.6220 -3.0428 5.6647 14 6 2.2302 -3.3831 6.9455 15 6 3.1741 -3.6667 7.9234 16 6 4.5185 -3.6146 7.6348 17 6 4.9444 -3.2764 6.3371 18 6 6.3182 -3.2255 6.0300 19 1 6.6879 -2.4916 5.3291 20 6 7.2061 -4.1281 6.6343 21 7 6.7436 -5.1340 7.3273 22 14 9.0496 -3.8910 6.4481 23 1 9.5534 -3.0389 7.5550 24 1 9.7256 -5.2125 6.4937 25 1 9.3352 -3.2334 5.1477 26 8 2.0160 -0.6917 1.1564 27 1 -0.3633 0.5246 0.8837 28 1 -0.3633 0.5029 -0.8962 29 1 -0.3633 -1.0276 0.0126 30 1 1.3043 -1.4356 -1.6300 31 1 2.3688 -0.0420 -2.0159 32 1 4.1637 -0.8888 -0.6484 33 1 3.4620 -2.4327 -1.2410 34 1 4.5933 -2.8536 1.3199 35 1 4.5437 -1.1298 1.7610 36 1 1.8778 -2.8238 4.9132 37 1 1.1789 -3.4290 7.1883 38 1 2.8503 -3.9306 8.9194 39 1 5.2455 -3.8372 8.4019 40 1 7.3575 -5.7579 7.7455 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789017887.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:29 Heat of formation + Delta-G solvation = -139.382607 kcal Electronic energy + Delta-G solvation = -22761.159873 eV Core-core repulsion = 19311.552645 eV Total energy + Delta-G solvation = -3449.607228 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.27693 -40.47849 -39.03444 -37.09010 -35.62702 -33.33014 -33.23595 -31.96359 -31.50259 -29.25367 -27.45310 -25.35601 -24.05037 -22.88854 -22.54312 -21.64546 -21.36619 -19.39940 -18.41151 -18.16606 -17.57069 -17.11193 -16.93724 -16.52094 -16.00182 -15.49939 -15.22671 -14.98296 -14.53245 -14.47423 -14.23450 -14.22695 -13.56431 -13.44566 -13.21936 -12.93511 -12.87827 -12.82416 -12.68261 -12.56020 -12.38447 -12.23781 -11.99946 -11.77962 -11.75052 -11.53738 -11.50408 -11.18672 -10.64574 -10.52052 -9.52883 -9.33247 -8.76318 -6.48339 0.31561 0.97807 1.33644 1.45943 1.50431 1.93615 2.02352 2.18717 2.70158 2.74480 3.48775 3.61393 3.69108 3.85984 4.00491 4.12963 4.23689 4.35835 4.39190 4.39909 4.42016 4.49559 4.60256 4.74229 4.80835 4.86709 4.88873 5.00564 5.04440 5.08359 5.16736 5.23238 5.25455 5.35160 5.49698 5.62645 5.79057 5.98971 6.04594 6.13809 6.27589 6.62073 6.76297 6.86260 7.24152 8.21583 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.019672 B = 0.004087 C = 0.003472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.030083 B = 6848.920927 C = 8062.007276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.057 3.943 3 H 0.081 0.919 4 C -0.138 4.138 5 C -0.143 4.143 6 C 0.085 3.915 7 H 0.082 0.918 8 C 0.064 3.936 9 O -0.362 6.362 10 C 0.503 3.497 11 O -0.546 6.546 12 C -0.277 4.277 13 C -0.040 4.040 14 C -0.237 4.237 15 C -0.082 4.082 16 C -0.174 4.174 17 C 0.122 3.878 18 C -0.462 4.462 19 H 0.089 0.911 20 C 0.035 3.965 21 N -0.812 5.812 22 Si 0.983 3.017 23 H -0.252 1.252 24 H -0.259 1.259 25 H -0.271 1.271 26 O -0.399 6.399 27 H 0.050 0.950 28 H 0.090 0.910 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.106 0.894 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.082 0.918 35 H 0.059 0.941 36 H 0.122 0.878 37 H 0.134 0.866 38 H 0.129 0.871 39 H 0.107 0.893 40 H 0.294 0.706 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.806 5.199 -13.549 16.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.000 4.000 3 H 0.098 0.902 4 C -0.175 4.175 5 C -0.181 4.181 6 C 0.028 3.972 7 H 0.100 0.900 8 C -0.010 4.010 9 O -0.280 6.280 10 C 0.355 3.645 11 O -0.440 6.440 12 C -0.280 4.280 13 C -0.058 4.058 14 C -0.256 4.256 15 C -0.100 4.100 16 C -0.193 4.193 17 C 0.118 3.882 18 C -0.490 4.490 19 H 0.107 0.893 20 C -0.182 4.182 21 N -0.437 5.437 22 Si 0.803 3.197 23 H -0.176 1.176 24 H -0.183 1.183 25 H -0.195 1.195 26 O -0.319 6.319 27 H 0.069 0.931 28 H 0.109 0.891 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.124 0.876 32 H 0.101 0.899 33 H 0.127 0.873 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.140 0.860 37 H 0.152 0.848 38 H 0.147 0.853 39 H 0.125 0.875 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -7.454 5.086 -13.325 16.093 hybrid contribution 1.039 -0.104 -0.051 1.046 sum -6.415 4.982 -13.376 15.649 Atomic orbital electron populations 1.22120 0.93963 1.02587 1.02869 1.23038 0.95318 0.96552 0.85044 0.90154 1.23179 0.97049 0.99933 0.97369 1.23268 0.99480 1.02827 0.92509 1.23063 0.90953 0.90170 0.93042 0.90024 1.23300 0.97035 1.00679 0.79995 1.86585 1.39826 1.81001 1.20603 1.21396 0.83460 0.73771 0.85895 1.90673 1.19348 1.51265 1.82698 1.19134 0.95015 1.23797 0.90036 1.21127 0.93520 0.94317 0.96825 1.20826 0.99323 1.11943 0.93512 1.21252 0.92781 0.96743 0.99266 1.21287 0.95471 1.06713 0.95815 1.17822 0.92953 0.86804 0.90598 1.20355 0.92574 1.14753 1.21277 0.89336 1.26888 1.06305 0.93210 0.91816 1.69720 1.39805 1.10046 1.24138 0.85194 0.75475 0.79250 0.79773 1.17630 1.18345 1.19537 1.88556 1.70737 1.40586 1.32052 0.93089 0.89130 0.92488 0.88904 0.87588 0.89864 0.87317 0.90002 0.92233 0.86003 0.84809 0.85346 0.87459 0.89489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 9.45 71.98 0.68 -2.00 16 2 C 0.06 1.15 4.15 31.06 0.13 1.28 16 3 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 4 C -0.14 -1.91 6.55 31.85 0.21 -1.71 16 5 C -0.14 -2.51 6.57 32.05 0.21 -2.30 16 6 C 0.09 2.28 3.73 31.26 0.12 2.39 16 7 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 8 C 0.06 2.23 5.19 71.98 0.37 2.61 16 9 O -0.36 -16.00 9.47 -55.38 -0.52 -16.53 16 10 C 0.50 26.13 7.86 70.20 0.55 26.68 16 11 O -0.55 -30.62 13.30 19.75 0.26 -30.35 16 12 C -0.28 -14.76 5.92 -19.71 -0.12 -14.88 16 13 C -0.04 -1.83 9.60 22.52 0.22 -1.61 16 14 C -0.24 -9.97 10.03 22.40 0.22 -9.75 16 15 C -0.08 -3.62 10.01 22.26 0.22 -3.40 16 16 C -0.17 -9.02 8.62 22.72 0.20 -8.83 16 17 C 0.12 6.88 5.49 -21.10 -0.12 6.76 16 18 C -0.46 -26.68 7.78 23.41 0.18 -26.50 16 19 H 0.09 5.36 5.72 -2.91 -0.02 5.35 16 20 C 0.03 1.81 5.24 85.37 0.45 2.25 16 21 N -0.81 -42.53 11.23 21.88 0.25 -42.28 16 22 Si 0.98 40.53 29.57 68.60 2.03 42.56 16 23 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 24 H -0.26 -9.86 7.11 99.48 0.71 -9.15 16 25 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 26 O -0.40 -11.95 10.70 -148.25 -1.59 -13.54 16 27 H 0.05 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 30 H 0.09 1.06 7.85 -2.39 -0.02 1.04 16 31 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.08 1.46 8.06 -2.39 -0.02 1.44 16 33 H 0.11 1.45 8.14 -2.38 -0.02 1.43 16 34 H 0.08 2.70 8.14 -2.39 -0.02 2.69 16 35 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 36 H 0.12 5.07 7.60 -2.91 -0.02 5.05 16 37 H 0.13 4.57 8.06 -2.91 -0.02 4.54 16 38 H 0.13 4.71 8.06 -2.91 -0.02 4.68 16 39 H 0.11 5.68 6.68 -2.91 -0.02 5.66 16 40 H 0.29 13.74 8.29 -92.71 -0.77 12.97 16 Total: -1.00 -68.72 335.38 4.99 -63.73 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 1.03 Total: 25.39 kcal Atomic # 6 Polarization: -32.51 SS G_CDS: 3.53 Total: -28.98 kcal Atomic # 7 Polarization: -42.53 SS G_CDS: 0.25 Total: -42.28 kcal Atomic # 8 Polarization: -58.57 SS G_CDS: -1.85 Total: -60.42 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -68.72 4.99 -63.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789017887.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.654 kcal (2) G-P(sol) polarization free energy of solvation -68.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds