Wall clock time and date at job start Tue Mar 31 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 110.67121 * 2 1 4 4 C 1.55000 * 110.61436 * 237.03821 * 2 1 3 5 5 C 1.54812 * 102.08986 * 204.47420 * 4 2 1 6 6 C 1.54100 * 104.18947 * 20.87990 * 5 4 2 7 7 H 1.09003 * 109.88092 * 242.45986 * 6 5 4 8 8 C 1.53001 * 109.87916 * 121.45042 * 6 5 4 9 9 O 1.45208 * 109.46845 * 174.99987 * 8 6 5 10 10 C 1.34775 * 116.99578 * 180.02562 * 9 8 6 11 11 O 1.21504 * 120.00233 * 359.97438 * 10 9 8 12 12 C 1.47513 * 119.99981 * 180.02562 * 10 9 8 13 13 C 1.40062 * 119.90092 * 179.97438 * 12 10 9 14 14 C 1.36303 * 120.09922 * 179.72172 * 13 12 10 15 15 C 1.40893 * 119.89648 * 0.25189 * 14 13 12 16 16 C 1.41097 * 120.09856 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99501 * 24.65323 * 16 15 14 18 18 C 1.40241 * 120.00346 * 204.65036 * 16 15 14 19 19 N 1.30636 * 120.00159 * 17.87827 * 18 16 15 20 20 Si 1.86799 * 120.00192 * 197.88680 * 18 16 15 21 21 H 1.48503 * 109.47038 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47497 * 119.99542 * 20 18 16 23 23 H 1.48504 * 109.46838 * 239.99919 * 20 18 16 24 24 C 1.40897 * 119.80905 * 0.02562 * 15 14 13 25 25 C 1.36309 * 119.89259 * 359.97438 * 24 15 14 26 26 O 1.43747 * 107.29251 * 2.02750 * 6 5 4 27 27 H 1.08998 * 109.46836 * 182.96587 * 1 2 3 28 28 H 1.09004 * 109.46573 * 302.96157 * 1 2 3 29 29 H 1.08995 * 109.47327 * 62.96191 * 1 2 3 30 30 H 1.09001 * 110.90831 * 86.27822 * 4 2 1 31 31 H 1.08999 * 110.90684 * 322.67165 * 4 2 1 32 32 H 1.08997 * 110.48972 * 262.20727 * 5 4 2 33 33 H 1.09004 * 110.60045 * 139.61053 * 5 4 2 34 34 H 1.09001 * 109.46564 * 55.00631 * 8 6 5 35 35 H 1.08988 * 109.47345 * 295.00349 * 8 6 5 36 36 H 1.07994 * 119.95241 * 0.02562 * 13 12 10 37 37 H 1.08003 * 120.04990 * 180.24038 * 14 13 12 38 38 H 0.96994 * 120.00261 * 180.02562 * 19 18 16 39 39 H 1.07997 * 120.05713 * 179.97438 * 24 15 14 40 40 H 1.07999 * 119.94673 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0758 -0.7893 -1.2172 5 6 3.4795 -1.2167 -0.7237 6 6 3.3840 -1.1254 0.8117 7 1 4.0873 -0.3801 1.1832 8 6 3.6935 -2.4884 1.4341 9 8 3.7175 -2.3656 2.8808 10 6 3.9788 -3.4843 3.5855 11 8 4.1805 -4.5336 3.0070 12 6 4.0187 -3.4351 5.0593 13 6 4.2899 -4.5991 5.7896 14 6 4.3334 -4.5571 7.1513 15 6 4.0998 -3.3415 7.8242 16 6 4.1443 -3.2931 9.2337 17 1 4.7210 -4.0239 9.7811 18 6 3.4397 -2.2960 9.9237 19 7 2.4819 -1.6398 9.3250 20 14 3.8709 -1.9061 11.6989 21 1 4.9836 -2.7839 12.1423 22 1 4.2880 -0.4850 11.8064 23 1 2.6834 -2.1399 12.5595 24 6 3.8216 -2.1743 7.0857 25 6 3.7801 -2.2257 5.7242 26 8 2.0385 -0.7353 1.1337 27 1 -0.3633 -1.0263 0.0532 28 1 -0.3632 0.5592 0.8623 29 1 -0.3634 0.4671 -0.9153 30 1 2.1509 -0.1475 -2.0951 31 1 1.4549 -1.6606 -1.4259 32 1 4.2407 -0.5332 -1.0998 33 1 3.6998 -2.2387 -1.0321 34 1 4.6651 -2.8360 1.0829 35 1 2.9247 -3.2039 1.1429 36 1 4.4697 -5.5302 5.2729 37 1 4.5464 -5.4543 7.7135 38 1 1.9948 -0.9499 9.8021 39 1 3.6415 -1.2405 7.5974 40 1 3.5673 -1.3314 5.1572 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789080716.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:32 Heat of formation + Delta-G solvation = -131.146829 kcal Electronic energy + Delta-G solvation = -22234.278558 eV Core-core repulsion = 18785.028461 eV Total energy + Delta-G solvation = -3449.250097 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.94586 -39.19653 -37.38930 -35.56291 -33.91644 -32.43234 -32.33443 -30.33168 -29.47023 -28.32268 -26.09516 -24.07581 -22.19713 -21.44076 -21.11121 -20.91208 -19.84798 -17.53367 -17.06114 -16.65594 -16.31018 -16.07787 -15.43675 -15.00294 -14.79771 -14.09263 -14.00140 -13.49106 -13.28900 -12.97321 -12.82994 -12.49926 -12.39688 -12.12307 -12.03259 -11.88637 -11.64202 -11.45501 -11.33773 -11.27918 -11.07081 -10.96173 -10.86481 -10.66446 -10.09340 -10.08831 -9.70436 -9.58611 -9.39559 -9.33511 -7.71677 -7.60611 -7.06678 -4.64647 2.09638 2.87342 2.94350 2.99976 3.06483 3.36701 3.65282 3.69104 3.73287 4.33438 4.49805 4.51856 4.69771 4.86893 5.02389 5.17936 5.24238 5.32752 5.36277 5.51165 5.53228 5.55322 5.63584 5.74970 5.87363 5.90306 6.00942 6.12434 6.25222 6.30549 6.77284 6.83441 6.89159 7.02486 7.08548 7.16643 7.45107 7.70837 7.81752 7.87719 8.03757 8.38826 8.59624 8.72877 8.79847 9.84600 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022770 B = 0.003202 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.378271 B = 8742.353035 C = 9671.387457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.067 3.933 3 H 0.070 0.930 4 C -0.150 4.150 5 C -0.150 4.150 6 C 0.080 3.920 7 H 0.079 0.921 8 C 0.071 3.929 9 O -0.352 6.352 10 C 0.515 3.485 11 O -0.556 6.556 12 C -0.274 4.274 13 C -0.018 4.018 14 C -0.240 4.240 15 C 0.132 3.868 16 C -0.436 4.436 17 H 0.087 0.913 18 C 0.073 3.927 19 N -0.763 5.763 20 Si 0.915 3.085 21 H -0.257 1.257 22 H -0.268 1.268 23 H -0.271 1.271 24 C -0.185 4.185 25 C -0.041 4.041 26 O -0.357 6.357 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.288 0.712 39 H 0.122 0.878 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.059 5.720 -13.798 14.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.009 3.991 3 H 0.087 0.913 4 C -0.188 4.188 5 C -0.187 4.187 6 C 0.022 3.978 7 H 0.097 0.903 8 C -0.004 4.004 9 O -0.270 6.270 10 C 0.367 3.633 11 O -0.451 6.451 12 C -0.276 4.276 13 C -0.037 4.037 14 C -0.259 4.259 15 C 0.128 3.872 16 C -0.463 4.463 17 H 0.105 0.895 18 C -0.150 4.150 19 N -0.386 5.386 20 Si 0.738 3.262 21 H -0.180 1.180 22 H -0.193 1.193 23 H -0.196 1.196 24 C -0.204 4.204 25 C -0.060 4.060 26 O -0.277 6.277 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.119 0.881 38 H 0.099 0.901 39 H 0.139 0.861 40 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -1.315 5.573 -13.752 14.896 hybrid contribution 0.178 0.172 0.402 0.472 sum -1.137 5.745 -13.349 14.577 Atomic orbital electron populations 1.21765 0.93134 1.03155 1.02310 1.23157 0.95393 0.95382 0.85126 0.91255 1.23192 0.96056 1.00974 0.98587 1.22920 0.98190 1.03343 0.94294 1.22754 0.85847 0.95705 0.93515 0.90277 1.23035 1.01788 0.96374 0.79200 1.86639 1.82958 1.38247 1.19107 1.21592 0.72140 0.80348 0.89179 1.90681 1.50498 1.31561 1.72318 1.18229 1.26384 0.96671 0.86343 1.20344 0.94123 0.95446 0.93768 1.20678 1.14760 0.97360 0.93127 1.17851 0.85401 0.90572 0.93365 1.19944 1.24106 1.10362 0.91849 0.89479 1.26157 0.92981 0.94191 1.01630 1.69753 1.13129 1.16721 1.39001 0.86139 0.79860 0.79532 0.80657 1.17999 1.19282 1.19598 1.21014 1.08254 0.98973 0.92209 1.20668 0.95197 0.95328 0.94799 1.89059 1.27024 1.73214 1.38362 0.91684 0.91652 0.91297 0.90180 0.90292 0.90034 0.89999 0.90641 0.91192 0.87995 0.88085 0.90062 0.86053 0.87948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.66 37.16 0.36 -1.01 16 2 C 0.07 0.71 3.98 -25.67 -0.10 0.61 16 3 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 4 C -0.15 -1.29 6.59 -24.72 -0.16 -1.45 16 5 C -0.15 -1.39 6.64 -25.20 -0.17 -1.56 16 6 C 0.08 1.05 3.72 -26.16 -0.10 0.96 16 7 H 0.08 1.02 8.14 -51.93 -0.42 0.59 16 8 C 0.07 1.14 4.93 37.16 0.18 1.32 16 9 O -0.35 -7.28 9.44 -42.51 -0.40 -7.68 16 10 C 0.51 11.94 7.89 34.51 0.27 12.21 16 11 O -0.56 -13.46 16.11 -19.27 -0.31 -13.77 16 12 C -0.27 -6.69 5.89 -104.75 -0.62 -7.30 16 13 C -0.02 -0.44 9.52 -39.59 -0.38 -0.81 16 14 C -0.24 -5.86 9.73 -39.27 -0.38 -6.24 16 15 C 0.13 3.39 5.58 -106.80 -0.60 2.80 16 16 C -0.44 -10.83 9.04 -37.75 -0.34 -11.17 16 17 H 0.09 2.05 7.91 -52.49 -0.42 1.64 16 18 C 0.07 1.70 5.14 -17.31 -0.09 1.61 16 19 N -0.76 -18.45 10.95 55.56 0.61 -17.84 16 20 Si 0.91 17.18 29.60 -169.99 -5.03 12.15 16 21 H -0.26 -4.78 7.11 56.52 0.40 -4.38 16 22 H -0.27 -4.95 7.11 56.52 0.40 -4.55 16 23 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 24 C -0.19 -4.72 8.64 -39.27 -0.34 -5.06 16 25 C -0.04 -1.00 9.55 -39.59 -0.38 -1.37 16 26 O -0.36 -5.39 10.88 -35.99 -0.39 -5.78 16 27 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.68 8.06 -51.93 -0.42 0.26 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.71 7.70 -51.93 -0.40 0.31 16 34 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 35 H 0.07 1.15 8.14 -51.94 -0.42 0.73 16 36 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 37 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 38 H 0.29 6.22 8.29 -40.82 -0.34 5.88 16 39 H 0.12 3.12 6.15 -52.49 -0.32 2.79 16 40 H 0.10 2.32 7.59 -52.49 -0.40 1.93 16 LS Contribution 339.44 15.07 5.12 5.12 Total: -1.00 -29.27 339.44 -8.96 -38.23 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.72 Total: 6.04 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -2.83 Total: -16.47 kcal Atomic # 7 Polarization: -18.45 SS G_CDS: 0.61 Total: -17.84 kcal Atomic # 8 Polarization: -26.13 SS G_CDS: -1.10 Total: -27.23 kcal Atomic # 14 Polarization: 17.18 SS G_CDS: -5.03 Total: 12.15 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.27 -8.96 -38.23 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789080716.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.918 kcal (2) G-P(sol) polarization free energy of solvation -29.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds