Wall clock time and date at job start Tue Mar 31 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.08998 * 110.67121 * 2 1 4 4 C 1.55000 * 110.61436 * 237.03821 * 2 1 3 5 5 C 1.54812 * 102.08986 * 204.47420 * 4 2 1 6 6 C 1.54100 * 104.18947 * 20.87990 * 5 4 2 7 7 H 1.09003 * 109.88092 * 242.45986 * 6 5 4 8 8 C 1.53001 * 109.87916 * 121.45042 * 6 5 4 9 9 O 1.45208 * 109.46845 * 174.99987 * 8 6 5 10 10 C 1.34775 * 116.99578 * 180.02562 * 9 8 6 11 11 O 1.21504 * 120.00233 * 359.97438 * 10 9 8 12 12 C 1.47513 * 119.99981 * 180.02562 * 10 9 8 13 13 C 1.40062 * 119.90092 * 179.97438 * 12 10 9 14 14 C 1.36303 * 120.09922 * 179.72172 * 13 12 10 15 15 C 1.40893 * 119.89648 * 0.25189 * 14 13 12 16 16 C 1.41097 * 120.09856 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99501 * 24.65323 * 16 15 14 18 18 C 1.40241 * 120.00346 * 204.65036 * 16 15 14 19 19 N 1.30636 * 120.00159 * 17.87827 * 18 16 15 20 20 Si 1.86799 * 120.00192 * 197.88680 * 18 16 15 21 21 H 1.48503 * 109.47038 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47497 * 119.99542 * 20 18 16 23 23 H 1.48504 * 109.46838 * 239.99919 * 20 18 16 24 24 C 1.40897 * 119.80905 * 0.02562 * 15 14 13 25 25 C 1.36309 * 119.89259 * 359.97438 * 24 15 14 26 26 O 1.43747 * 107.29251 * 2.02750 * 6 5 4 27 27 H 1.08998 * 109.46836 * 182.96587 * 1 2 3 28 28 H 1.09004 * 109.46573 * 302.96157 * 1 2 3 29 29 H 1.08995 * 109.47327 * 62.96191 * 1 2 3 30 30 H 1.09001 * 110.90831 * 86.27822 * 4 2 1 31 31 H 1.08999 * 110.90684 * 322.67165 * 4 2 1 32 32 H 1.08997 * 110.48972 * 262.20727 * 5 4 2 33 33 H 1.09004 * 110.60045 * 139.61053 * 5 4 2 34 34 H 1.09001 * 109.46564 * 55.00631 * 8 6 5 35 35 H 1.08988 * 109.47345 * 295.00349 * 8 6 5 36 36 H 1.07994 * 119.95241 * 0.02562 * 13 12 10 37 37 H 1.08003 * 120.04990 * 180.24038 * 14 13 12 38 38 H 0.96994 * 120.00261 * 180.02562 * 19 18 16 39 39 H 1.07997 * 120.05713 * 179.97438 * 24 15 14 40 40 H 1.07999 * 119.94673 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9148 1.0198 0.0000 4 6 2.0758 -0.7893 -1.2172 5 6 3.4795 -1.2167 -0.7237 6 6 3.3840 -1.1254 0.8117 7 1 4.0873 -0.3801 1.1832 8 6 3.6935 -2.4884 1.4341 9 8 3.7175 -2.3656 2.8808 10 6 3.9788 -3.4843 3.5855 11 8 4.1805 -4.5336 3.0070 12 6 4.0187 -3.4351 5.0593 13 6 4.2899 -4.5991 5.7896 14 6 4.3334 -4.5571 7.1513 15 6 4.0998 -3.3415 7.8242 16 6 4.1443 -3.2931 9.2337 17 1 4.7210 -4.0239 9.7811 18 6 3.4397 -2.2960 9.9237 19 7 2.4819 -1.6398 9.3250 20 14 3.8709 -1.9061 11.6989 21 1 4.9836 -2.7839 12.1423 22 1 4.2880 -0.4850 11.8064 23 1 2.6834 -2.1399 12.5595 24 6 3.8216 -2.1743 7.0857 25 6 3.7801 -2.2257 5.7242 26 8 2.0385 -0.7353 1.1337 27 1 -0.3633 -1.0263 0.0532 28 1 -0.3632 0.5592 0.8623 29 1 -0.3634 0.4671 -0.9153 30 1 2.1509 -0.1475 -2.0951 31 1 1.4549 -1.6606 -1.4259 32 1 4.2407 -0.5332 -1.0998 33 1 3.6998 -2.2387 -1.0321 34 1 4.6651 -2.8360 1.0829 35 1 2.9247 -3.2039 1.1429 36 1 4.4697 -5.5302 5.2729 37 1 4.5464 -5.4543 7.7135 38 1 1.9948 -0.9499 9.8021 39 1 3.6415 -1.2405 7.5974 40 1 3.5673 -1.3314 5.1572 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789080716.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:32 Heat of formation + Delta-G solvation = -145.689373 kcal Electronic energy + Delta-G solvation = -22234.909170 eV Core-core repulsion = 18785.028461 eV Total energy + Delta-G solvation = -3449.880709 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.37188 -40.46641 -39.23591 -37.26384 -35.75805 -33.37679 -33.25463 -32.16230 -31.38982 -29.43134 -27.85652 -25.19374 -23.85876 -22.83661 -22.32438 -22.05549 -21.58996 -19.41400 -18.60669 -18.12489 -17.62773 -17.35990 -17.04880 -16.35641 -15.99108 -15.76594 -15.22518 -14.94499 -14.75038 -14.33648 -14.22050 -14.00037 -13.78166 -13.56975 -13.26928 -13.23111 -12.92334 -12.82723 -12.67788 -12.62542 -12.41023 -12.30126 -11.86613 -11.80735 -11.71570 -11.50975 -11.44079 -11.23130 -11.13634 -10.68001 -9.64697 -9.54486 -8.85365 -6.55977 0.22624 1.12239 1.35743 1.41246 1.57031 1.85036 1.88330 2.15250 2.66981 2.76689 3.52039 3.61291 3.63806 3.87893 3.95332 4.04755 4.18056 4.29295 4.33353 4.36476 4.40685 4.47686 4.51176 4.68259 4.83794 4.89119 4.91401 4.97505 5.01218 5.05938 5.10839 5.18935 5.21687 5.26513 5.41536 5.54868 5.80331 5.89923 5.95630 6.00885 6.13559 6.48230 6.69227 6.81066 7.00688 8.09653 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022770 B = 0.003202 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1229.378271 B = 8742.353035 C = 9671.387457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.055 3.945 3 H 0.081 0.919 4 C -0.143 4.143 5 C -0.142 4.142 6 C 0.078 3.922 7 H 0.080 0.920 8 C 0.063 3.937 9 O -0.360 6.360 10 C 0.518 3.482 11 O -0.571 6.571 12 C -0.293 4.293 13 C -0.022 4.022 14 C -0.250 4.250 15 C 0.105 3.895 16 C -0.457 4.457 17 H 0.095 0.905 18 C 0.034 3.966 19 N -0.792 5.792 20 Si 0.993 3.007 21 H -0.253 1.253 22 H -0.261 1.261 23 H -0.263 1.263 24 C -0.202 4.202 25 C -0.040 4.040 26 O -0.398 6.398 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.098 0.902 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.106 0.894 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.062 0.938 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.300 0.700 39 H 0.114 0.886 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.844 6.624 -14.308 15.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.002 4.002 3 H 0.099 0.901 4 C -0.180 4.180 5 C -0.180 4.180 6 C 0.020 3.980 7 H 0.098 0.902 8 C -0.011 4.011 9 O -0.277 6.277 10 C 0.371 3.629 11 O -0.467 6.467 12 C -0.296 4.296 13 C -0.041 4.041 14 C -0.269 4.269 15 C 0.102 3.898 16 C -0.483 4.483 17 H 0.113 0.887 18 C -0.186 4.186 19 N -0.414 5.414 20 Si 0.812 3.188 21 H -0.176 1.176 22 H -0.185 1.185 23 H -0.187 1.187 24 C -0.222 4.222 25 C -0.059 4.059 26 O -0.319 6.319 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.116 0.884 30 H 0.128 0.872 31 H 0.095 0.905 32 H 0.125 0.875 33 H 0.106 0.894 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.130 0.870 37 H 0.134 0.866 38 H 0.111 0.889 39 H 0.132 0.868 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.110 6.485 -14.297 15.738 hybrid contribution 0.044 -0.069 0.509 0.516 sum -1.066 6.416 -13.787 15.245 Atomic orbital electron populations 1.21800 0.92572 1.02555 1.03339 1.23470 0.96000 0.95855 0.84826 0.90136 1.23194 0.95152 1.01104 0.98568 1.22949 0.99509 1.04564 0.90973 1.22872 0.85396 0.93703 0.96000 0.90205 1.23467 1.02456 0.98594 0.76551 1.86611 1.82283 1.37027 1.21784 1.21371 0.71869 0.80722 0.88959 1.90654 1.51287 1.32163 1.72609 1.18470 1.26786 0.96818 0.87504 1.20505 0.93834 0.95877 0.93842 1.20876 1.14922 0.97629 0.93450 1.18198 0.86189 0.91099 0.94351 1.20283 1.24603 1.11615 0.91820 0.88727 1.27086 0.92156 0.93227 1.06139 1.69779 1.13585 1.16910 1.41147 0.84981 0.79742 0.79439 0.74611 1.17568 1.18524 1.18706 1.21008 1.09678 0.98813 0.92664 1.20751 0.94739 0.95818 0.94552 1.89019 1.27882 1.74019 1.40932 0.92835 0.92765 0.88368 0.87176 0.90513 0.87508 0.89377 0.89176 0.91940 0.86974 0.86584 0.88891 0.86835 0.87032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.66 71.98 0.70 -1.87 16 2 C 0.06 1.09 3.98 31.28 0.12 1.22 16 3 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 4 C -0.14 -2.06 6.59 31.90 0.21 -1.85 16 5 C -0.14 -2.29 6.64 31.58 0.21 -2.08 16 6 C 0.08 2.00 3.72 30.97 0.12 2.11 16 7 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 8 C 0.06 2.03 4.93 71.98 0.35 2.38 16 9 O -0.36 -15.08 9.44 -55.12 -0.52 -15.60 16 10 C 0.52 24.36 7.89 70.27 0.55 24.92 16 11 O -0.57 -27.83 16.11 19.82 0.32 -27.52 16 12 C -0.29 -14.61 5.89 -19.95 -0.12 -14.73 16 13 C -0.02 -1.08 9.52 22.26 0.21 -0.87 16 14 C -0.25 -12.36 9.73 22.47 0.22 -12.14 16 15 C 0.11 5.52 5.58 -21.28 -0.12 5.40 16 16 C -0.46 -22.79 9.04 23.46 0.21 -22.58 16 17 H 0.09 4.43 7.91 -2.91 -0.02 4.41 16 18 C 0.03 1.57 5.14 85.36 0.44 2.01 16 19 N -0.79 -38.28 10.95 21.87 0.24 -38.04 16 20 Si 0.99 34.23 29.60 68.60 2.03 36.26 16 21 H -0.25 -8.48 7.11 99.48 0.71 -7.77 16 22 H -0.26 -8.65 7.11 99.48 0.71 -7.95 16 23 H -0.26 -8.67 7.11 99.48 0.71 -7.96 16 24 C -0.20 -10.59 8.64 22.47 0.19 -10.40 16 25 C -0.04 -1.98 9.55 22.26 0.21 -1.77 16 26 O -0.40 -11.95 10.88 -148.26 -1.61 -13.57 16 27 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 1.15 8.06 -2.39 -0.02 1.13 16 32 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 1.32 7.70 -2.39 -0.02 1.31 16 34 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.11 5.15 7.63 -2.91 -0.02 5.13 16 37 H 0.12 5.23 8.06 -2.91 -0.02 5.20 16 38 H 0.30 12.80 8.29 -92.71 -0.77 12.03 16 39 H 0.11 6.01 6.15 -2.91 -0.02 5.99 16 40 H 0.11 5.20 7.59 -2.91 -0.02 5.18 16 Total: -1.00 -63.76 339.44 5.00 -58.76 By element: Atomic # 1 Polarization: 28.91 SS G_CDS: 1.03 Total: 29.94 kcal Atomic # 6 Polarization: -33.75 SS G_CDS: 3.52 Total: -30.24 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.24 Total: -38.04 kcal Atomic # 8 Polarization: -54.87 SS G_CDS: -1.81 Total: -56.68 kcal Atomic # 14 Polarization: 34.23 SS G_CDS: 2.03 Total: 36.26 kcal Total: -63.76 5.00 -58.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789080716.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.929 kcal (2) G-P(sol) polarization free energy of solvation -63.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds