Wall clock time and date at job start Tue Mar 31 2020 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.82328 * 2 1 4 4 C 1.54383 * 109.82701 * 120.88539 * 2 1 3 5 5 C 1.55311 * 102.24814 * 140.95953 * 4 2 1 6 6 C 1.54945 * 100.94557 * 325.86547 * 5 4 2 7 7 H 1.08997 * 110.30966 * 277.52972 * 6 5 4 8 8 C 1.52998 * 110.31045 * 155.45619 * 6 5 4 9 9 O 1.45198 * 109.47030 * 175.00106 * 8 6 5 10 10 C 1.34778 * 116.99803 * 180.02562 * 9 8 6 11 11 O 1.21505 * 120.00012 * 359.97438 * 10 9 8 12 12 C 1.47510 * 119.99746 * 180.02562 * 10 9 8 13 13 C 1.40065 * 119.90127 * 359.71222 * 12 10 9 14 14 C 1.36300 * 120.10158 * 179.76050 * 13 12 10 15 15 C 1.40904 * 119.89522 * 0.52195 * 14 13 12 16 16 C 1.41094 * 120.09689 * 179.71445 * 15 14 13 17 17 H 1.07999 * 119.99711 * 204.67529 * 16 15 14 18 18 C 1.40245 * 119.99990 * 24.67328 * 16 15 14 19 19 N 1.30634 * 120.00106 * 17.86546 * 18 16 15 20 20 Si 1.86802 * 119.99611 * 197.87019 * 18 16 15 21 21 H 1.48494 * 109.47350 * 59.99843 * 20 18 16 22 22 H 1.48498 * 109.46796 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46972 * 299.99661 * 20 18 16 24 24 C 1.40900 * 119.80425 * 359.73823 * 15 14 13 25 25 C 1.36299 * 119.89445 * 0.02562 * 24 15 14 26 26 O 1.43238 * 109.90180 * 239.06449 * 2 1 3 27 27 H 1.08995 * 109.46724 * 299.30194 * 1 2 3 28 28 H 1.09003 * 109.46756 * 59.30214 * 1 2 3 29 29 H 1.09000 * 109.47147 * 179.30023 * 1 2 3 30 30 H 1.09004 * 110.84402 * 259.14770 * 4 2 1 31 31 H 1.08996 * 110.84946 * 22.77157 * 4 2 1 32 32 H 1.09009 * 111.12336 * 83.78837 * 5 4 2 33 33 H 1.08999 * 111.12532 * 207.89670 * 5 4 2 34 34 H 1.08994 * 109.47564 * 295.00306 * 8 6 5 35 35 H 1.09004 * 109.46722 * 54.99922 * 8 6 5 36 36 H 1.07998 * 119.94791 * 0.03120 * 13 12 10 37 37 H 1.07995 * 120.05446 * 180.28063 * 14 13 12 38 38 H 0.97001 * 119.99866 * 179.97438 * 19 18 16 39 39 H 1.07992 * 120.05114 * 180.02562 * 24 15 14 40 40 H 1.07999 * 119.94512 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 6 2.0537 -0.7455 1.2464 5 6 3.2744 -1.5198 0.6785 6 6 2.7777 -1.8431 -0.7531 7 1 2.1442 -2.7300 -0.7424 8 6 3.9665 -2.0520 -1.6932 9 8 3.4844 -2.4690 -2.9978 10 6 4.4120 -2.6972 -3.9486 11 8 5.5912 -2.5513 -3.6944 12 6 3.9956 -3.1231 -5.2981 13 6 2.6360 -3.2955 -5.5873 14 6 2.2464 -3.6842 -6.8343 15 6 3.2144 -3.9233 -7.8299 16 6 2.8161 -4.3316 -9.1204 17 1 3.4998 -4.8856 -9.7465 18 6 1.5323 -4.0182 -9.5901 19 7 0.8371 -3.0758 -9.0112 20 14 0.8166 -4.9484 -11.0433 21 1 0.7351 -6.3941 -10.7140 22 1 -0.5434 -4.4315 -11.3405 23 1 1.6889 -4.7594 -12.2301 24 6 4.5812 -3.7538 -7.5328 25 6 4.9614 -3.3602 -6.2845 26 8 2.0177 -0.6924 -1.1552 27 1 -0.3632 0.5029 0.8962 28 1 -0.3633 0.5247 -0.8837 29 1 -0.3633 -1.0276 -0.0126 30 1 2.3657 -0.0408 2.0172 31 1 1.3018 -1.4347 1.6306 32 1 4.1628 -0.8885 0.6529 33 1 3.4599 -2.4317 1.2461 34 1 4.5202 -1.1184 -1.7919 35 1 4.6217 -2.8215 -1.2849 36 1 1.8951 -3.1160 -4.8224 37 1 1.1976 -3.8126 -7.0578 38 1 -0.0507 -2.8587 -9.3364 39 1 5.3264 -3.9356 -8.2930 40 1 6.0088 -3.2297 -6.0560 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789080726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:40 Heat of formation + Delta-G solvation = -131.542864 kcal Electronic energy + Delta-G solvation = -22221.382880 eV Core-core repulsion = 18772.115609 eV Total energy + Delta-G solvation = -3449.267271 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.95733 -39.22886 -37.39266 -35.57216 -33.91685 -32.46129 -32.29692 -30.32899 -29.47047 -28.32351 -26.09745 -24.11951 -22.21363 -21.70356 -20.94066 -20.72389 -19.83993 -17.53111 -17.24934 -16.84763 -16.32067 -15.84681 -15.36805 -15.27416 -14.47934 -14.06356 -13.82313 -13.67661 -13.31184 -13.08240 -12.90717 -12.46582 -12.22678 -12.15685 -12.05356 -11.92699 -11.72664 -11.42584 -11.34373 -11.26152 -11.02825 -11.02262 -10.96770 -10.66480 -10.11220 -10.09991 -9.58507 -9.56394 -9.39830 -9.32905 -7.71799 -7.60590 -7.06482 -4.64792 2.10113 2.89763 2.93777 2.96980 3.06571 3.34976 3.63081 3.68167 3.73247 4.24945 4.50029 4.54859 4.64346 4.97522 5.00182 5.17977 5.21103 5.33758 5.39748 5.46165 5.49141 5.55251 5.61969 5.70625 5.84016 5.96885 6.07140 6.12644 6.25190 6.30542 6.77242 6.83371 7.00777 7.02536 7.09087 7.16641 7.44780 7.70847 7.81505 7.87456 8.03708 8.38491 8.59386 8.72861 8.79771 9.84741 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021797 B = 0.003243 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.243084 B = 8632.851808 C = 9728.114145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.071 3.929 3 H 0.078 0.922 4 C -0.150 4.150 5 C -0.150 4.150 6 C 0.084 3.916 7 H 0.081 0.919 8 C 0.070 3.930 9 O -0.352 6.352 10 C 0.515 3.485 11 O -0.556 6.556 12 C -0.274 4.274 13 C -0.041 4.041 14 C -0.185 4.185 15 C 0.132 3.868 16 C -0.436 4.436 17 H 0.087 0.913 18 C 0.073 3.927 19 N -0.764 5.764 20 Si 0.916 3.084 21 H -0.260 1.260 22 H -0.275 1.275 23 H -0.262 1.262 24 C -0.240 4.240 25 C -0.018 4.018 26 O -0.363 6.363 27 H 0.064 0.936 28 H 0.064 0.936 29 H 0.060 0.940 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.122 0.878 38 H 0.289 0.711 39 H 0.101 0.899 40 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.429 2.692 14.589 15.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.014 3.986 3 H 0.096 0.904 4 C -0.187 4.187 5 C -0.187 4.187 6 C 0.026 3.974 7 H 0.099 0.901 8 C -0.004 4.004 9 O -0.270 6.270 10 C 0.368 3.632 11 O -0.450 6.450 12 C -0.277 4.277 13 C -0.060 4.060 14 C -0.204 4.204 15 C 0.128 3.872 16 C -0.463 4.463 17 H 0.105 0.895 18 C -0.149 4.149 19 N -0.386 5.386 20 Si 0.739 3.261 21 H -0.184 1.184 22 H -0.200 1.200 23 H -0.186 1.186 24 C -0.259 4.259 25 C -0.037 4.037 26 O -0.282 6.282 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.079 0.921 30 H 0.100 0.900 31 H 0.098 0.902 32 H 0.101 0.899 33 H 0.106 0.894 34 H 0.089 0.911 35 H 0.095 0.905 36 H 0.120 0.880 37 H 0.139 0.861 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -2.382 2.954 14.463 14.953 hybrid contribution -0.241 -0.239 -0.294 0.449 sum -2.624 2.715 14.170 14.664 Atomic orbital electron populations 1.22139 0.94886 1.02714 1.02234 1.22742 0.94509 0.96397 0.84983 0.90390 1.23188 0.97645 0.99739 0.98141 1.23242 0.98906 1.01563 0.95009 1.22995 0.92145 0.90312 0.91936 0.90100 1.22961 0.95154 1.00532 0.81787 1.86637 1.40141 1.79502 1.20688 1.21590 0.83166 0.73215 0.85278 1.90682 1.19129 1.53014 1.82213 1.18224 0.94665 1.24501 0.90261 1.20664 0.93569 0.95300 0.96475 1.21009 0.99990 1.07621 0.91819 1.17842 0.91079 0.85503 0.92729 1.19887 0.97919 1.28954 0.99565 0.89541 1.26154 0.96552 0.93546 0.98695 1.69739 1.11219 1.20833 1.36808 0.86222 0.78441 0.80823 0.80588 1.18395 1.19961 1.18600 1.20677 0.95956 1.13038 0.96279 1.20344 0.97007 0.94117 0.92201 1.88604 1.70306 1.39923 1.29391 0.91755 0.91710 0.92106 0.89953 0.90227 0.89931 0.89442 0.91150 0.90545 0.87955 0.86055 0.89947 0.88090 0.87992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 9.44 37.16 0.35 -1.19 16 2 C 0.07 0.76 4.15 -26.00 -0.11 0.65 16 3 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 4 C -0.15 -1.21 6.54 -24.78 -0.16 -1.37 16 5 C -0.15 -1.36 6.57 -24.48 -0.16 -1.52 16 6 C 0.08 1.10 3.73 -25.71 -0.10 1.00 16 7 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 8 C 0.07 1.13 5.19 37.16 0.19 1.32 16 9 O -0.35 -7.25 9.45 -41.66 -0.39 -7.64 16 10 C 0.51 11.91 7.89 34.51 0.27 12.18 16 11 O -0.56 -13.42 16.11 -19.27 -0.31 -13.73 16 12 C -0.27 -6.68 5.89 -104.75 -0.62 -7.30 16 13 C -0.04 -1.00 9.55 -39.59 -0.38 -1.38 16 14 C -0.19 -4.71 8.64 -39.27 -0.34 -5.05 16 15 C 0.13 3.40 5.58 -106.80 -0.60 2.80 16 16 C -0.44 -10.83 9.04 -37.75 -0.34 -11.17 16 17 H 0.09 2.02 7.91 -52.49 -0.42 1.61 16 18 C 0.07 1.70 5.14 -17.31 -0.09 1.61 16 19 N -0.76 -18.44 10.95 55.56 0.61 -17.83 16 20 Si 0.92 17.17 29.60 -169.99 -5.03 12.14 16 21 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 22 H -0.27 -5.01 7.11 56.52 0.40 -4.61 16 23 H -0.26 -4.85 7.11 56.52 0.40 -4.45 16 24 C -0.24 -5.85 9.73 -39.27 -0.38 -6.24 16 25 C -0.02 -0.43 9.52 -39.59 -0.38 -0.81 16 26 O -0.36 -5.44 10.71 -35.25 -0.38 -5.81 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.58 7.85 -51.93 -0.41 0.17 16 32 H 0.08 0.72 8.06 -51.92 -0.42 0.30 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.10 2.31 7.59 -52.49 -0.40 1.92 16 37 H 0.12 3.11 6.15 -52.49 -0.32 2.79 16 38 H 0.29 6.28 8.29 -40.82 -0.34 5.94 16 39 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 40 H 0.10 2.32 7.63 -52.49 -0.40 1.92 16 LS Contribution 339.54 15.07 5.12 5.12 Total: -1.00 -29.14 339.54 -8.94 -38.09 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -5.72 Total: 6.12 kcal Atomic # 6 Polarization: -13.63 SS G_CDS: -2.83 Total: -16.46 kcal Atomic # 7 Polarization: -18.44 SS G_CDS: 0.61 Total: -17.83 kcal Atomic # 8 Polarization: -26.10 SS G_CDS: -1.08 Total: -27.18 kcal Atomic # 14 Polarization: 17.17 SS G_CDS: -5.03 Total: 12.14 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.14 -8.94 -38.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789080726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.457 kcal (2) G-P(sol) polarization free energy of solvation -29.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.086 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds