Wall clock time and date at job start Tue Mar 31 2020 06:19:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08997 * 109.82328 * 2 1 4 4 C 1.54383 * 109.82701 * 120.88539 * 2 1 3 5 5 C 1.55311 * 102.24814 * 140.95953 * 4 2 1 6 6 C 1.54945 * 100.94557 * 325.86547 * 5 4 2 7 7 H 1.08997 * 110.30966 * 277.52972 * 6 5 4 8 8 C 1.52998 * 110.31045 * 155.45619 * 6 5 4 9 9 O 1.45198 * 109.47030 * 175.00106 * 8 6 5 10 10 C 1.34778 * 116.99803 * 180.02562 * 9 8 6 11 11 O 1.21505 * 120.00012 * 359.97438 * 10 9 8 12 12 C 1.47510 * 119.99746 * 180.02562 * 10 9 8 13 13 C 1.40065 * 119.90127 * 359.71222 * 12 10 9 14 14 C 1.36300 * 120.10158 * 179.76050 * 13 12 10 15 15 C 1.40904 * 119.89522 * 0.52195 * 14 13 12 16 16 C 1.41094 * 120.09689 * 179.71445 * 15 14 13 17 17 H 1.07999 * 119.99711 * 204.67529 * 16 15 14 18 18 C 1.40245 * 119.99990 * 24.67328 * 16 15 14 19 19 N 1.30634 * 120.00106 * 17.86546 * 18 16 15 20 20 Si 1.86802 * 119.99611 * 197.87019 * 18 16 15 21 21 H 1.48494 * 109.47350 * 59.99843 * 20 18 16 22 22 H 1.48498 * 109.46796 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.46972 * 299.99661 * 20 18 16 24 24 C 1.40900 * 119.80425 * 359.73823 * 15 14 13 25 25 C 1.36299 * 119.89445 * 0.02562 * 24 15 14 26 26 O 1.43238 * 109.90180 * 239.06449 * 2 1 3 27 27 H 1.08995 * 109.46724 * 299.30194 * 1 2 3 28 28 H 1.09003 * 109.46756 * 59.30214 * 1 2 3 29 29 H 1.09000 * 109.47147 * 179.30023 * 1 2 3 30 30 H 1.09004 * 110.84402 * 259.14770 * 4 2 1 31 31 H 1.08996 * 110.84946 * 22.77157 * 4 2 1 32 32 H 1.09009 * 111.12336 * 83.78837 * 5 4 2 33 33 H 1.08999 * 111.12532 * 207.89670 * 5 4 2 34 34 H 1.08994 * 109.47564 * 295.00306 * 8 6 5 35 35 H 1.09004 * 109.46722 * 54.99922 * 8 6 5 36 36 H 1.07998 * 119.94791 * 0.03120 * 13 12 10 37 37 H 1.07995 * 120.05446 * 180.28063 * 14 13 12 38 38 H 0.97001 * 119.99866 * 179.97438 * 19 18 16 39 39 H 1.07992 * 120.05114 * 180.02562 * 24 15 14 40 40 H 1.07999 * 119.94512 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8997 1.0254 0.0000 4 6 2.0537 -0.7455 1.2464 5 6 3.2744 -1.5198 0.6785 6 6 2.7777 -1.8431 -0.7531 7 1 2.1442 -2.7300 -0.7424 8 6 3.9665 -2.0520 -1.6932 9 8 3.4844 -2.4690 -2.9978 10 6 4.4120 -2.6972 -3.9486 11 8 5.5912 -2.5513 -3.6944 12 6 3.9956 -3.1231 -5.2981 13 6 2.6360 -3.2955 -5.5873 14 6 2.2464 -3.6842 -6.8343 15 6 3.2144 -3.9233 -7.8299 16 6 2.8161 -4.3316 -9.1204 17 1 3.4998 -4.8856 -9.7465 18 6 1.5323 -4.0182 -9.5901 19 7 0.8371 -3.0758 -9.0112 20 14 0.8166 -4.9484 -11.0433 21 1 0.7351 -6.3941 -10.7140 22 1 -0.5434 -4.4315 -11.3405 23 1 1.6889 -4.7594 -12.2301 24 6 4.5812 -3.7538 -7.5328 25 6 4.9614 -3.3602 -6.2845 26 8 2.0177 -0.6924 -1.1552 27 1 -0.3632 0.5029 0.8962 28 1 -0.3633 0.5247 -0.8837 29 1 -0.3633 -1.0276 -0.0126 30 1 2.3657 -0.0408 2.0172 31 1 1.3018 -1.4347 1.6306 32 1 4.1628 -0.8885 0.6529 33 1 3.4599 -2.4317 1.2461 34 1 4.5202 -1.1184 -1.7919 35 1 4.6217 -2.8215 -1.2849 36 1 1.8951 -3.1160 -4.8224 37 1 1.1976 -3.8126 -7.0578 38 1 -0.0507 -2.8587 -9.3364 39 1 5.3264 -3.9356 -8.2930 40 1 6.0088 -3.2297 -6.0560 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789080726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:40 Heat of formation + Delta-G solvation = -145.982296 kcal Electronic energy + Delta-G solvation = -22222.009021 eV Core-core repulsion = 18772.115609 eV Total energy + Delta-G solvation = -3449.893412 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.36257 -40.50208 -39.23750 -37.26876 -35.75533 -33.36386 -33.25546 -32.15397 -31.38702 -29.42465 -27.85454 -25.22321 -23.88529 -22.83429 -22.56205 -21.72686 -21.54822 -19.40819 -18.58700 -18.28672 -17.84060 -17.21454 -16.96870 -16.60019 -15.79123 -15.53161 -15.23252 -15.03566 -14.56285 -14.46254 -14.26053 -14.03152 -13.84845 -13.44933 -13.36509 -13.15067 -12.87215 -12.87140 -12.69195 -12.67705 -12.42318 -12.29827 -11.83839 -11.82850 -11.75406 -11.56917 -11.43193 -11.22669 -11.12173 -10.54501 -9.64523 -9.54188 -8.84902 -6.55860 0.23269 1.12570 1.37434 1.42411 1.53680 1.85066 1.88978 2.15179 2.67417 2.72763 3.47431 3.61569 3.66189 3.84895 3.99465 4.09770 4.17946 4.33357 4.34993 4.36032 4.39472 4.41411 4.51216 4.73052 4.81918 4.86183 4.91610 4.97461 4.99508 5.04913 5.11140 5.21308 5.22122 5.33479 5.42190 5.54979 5.80661 5.90191 5.95724 6.12281 6.13851 6.48190 6.69285 6.81333 7.01151 8.09703 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.021797 B = 0.003243 C = 0.002878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.243084 B = 8632.851808 C = 9728.114145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.058 3.942 3 H 0.082 0.918 4 C -0.139 4.139 5 C -0.141 4.141 6 C 0.081 3.919 7 H 0.080 0.920 8 C 0.063 3.937 9 O -0.360 6.360 10 C 0.518 3.482 11 O -0.571 6.571 12 C -0.294 4.294 13 C -0.040 4.040 14 C -0.203 4.203 15 C 0.105 3.895 16 C -0.458 4.458 17 H 0.095 0.905 18 C 0.035 3.965 19 N -0.791 5.791 20 Si 0.993 3.007 21 H -0.256 1.256 22 H -0.265 1.265 23 H -0.255 1.255 24 C -0.250 4.250 25 C -0.022 4.022 26 O -0.402 6.402 27 H 0.091 0.909 28 H 0.047 0.953 29 H 0.055 0.945 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.110 0.890 34 H 0.063 0.937 35 H 0.092 0.908 36 H 0.112 0.888 37 H 0.114 0.886 38 H 0.300 0.700 39 H 0.116 0.884 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.022 2.409 15.411 15.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.001 3.999 3 H 0.100 0.900 4 C -0.176 4.176 5 C -0.178 4.178 6 C 0.023 3.977 7 H 0.098 0.902 8 C -0.011 4.011 9 O -0.277 6.277 10 C 0.371 3.629 11 O -0.467 6.467 12 C -0.296 4.296 13 C -0.059 4.059 14 C -0.222 4.222 15 C 0.102 3.898 16 C -0.484 4.484 17 H 0.113 0.887 18 C -0.186 4.186 19 N -0.414 5.414 20 Si 0.812 3.188 21 H -0.180 1.180 22 H -0.189 1.189 23 H -0.178 1.178 24 C -0.269 4.269 25 C -0.041 4.041 26 O -0.323 6.323 27 H 0.110 0.890 28 H 0.067 0.933 29 H 0.074 0.926 30 H 0.125 0.875 31 H 0.110 0.890 32 H 0.105 0.895 33 H 0.129 0.871 34 H 0.082 0.918 35 H 0.110 0.890 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.111 0.889 39 H 0.134 0.866 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -2.977 2.688 15.318 15.834 hybrid contribution -0.086 -0.073 -0.503 0.515 sum -3.063 2.615 14.815 15.353 Atomic orbital electron populations 1.22135 0.94256 1.02515 1.02809 1.23034 0.95133 0.96622 0.85130 0.90040 1.23189 0.97190 0.99968 0.97269 1.23265 0.99420 1.02896 0.92267 1.23105 0.91131 0.90106 0.93316 0.90165 1.23387 0.97078 1.00549 0.80082 1.86609 1.39820 1.79093 1.22221 1.21362 0.83161 0.72917 0.85458 1.90655 1.19650 1.53751 1.82617 1.18469 0.94792 1.24954 0.91381 1.20750 0.93968 0.94810 0.96350 1.21007 0.99686 1.09056 0.92428 1.18192 0.91772 0.86289 0.93567 1.20246 0.99386 1.29293 0.99524 0.88673 1.27084 0.96160 0.93845 1.01497 1.69773 1.11879 1.21601 1.38154 0.85070 0.77901 0.79132 0.76678 1.18037 1.18879 1.17848 1.20876 0.95957 1.13188 0.96880 1.20507 0.97554 0.93830 0.92162 1.88563 1.70833 1.40688 1.32205 0.89033 0.93342 0.92596 0.87468 0.89044 0.89529 0.87111 0.91828 0.89014 0.87025 0.86838 0.88881 0.86583 0.86958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 9.44 71.98 0.68 -2.17 16 2 C 0.06 1.16 4.15 31.07 0.13 1.29 16 3 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 4 C -0.14 -1.83 6.54 31.86 0.21 -1.62 16 5 C -0.14 -2.22 6.57 32.05 0.21 -2.01 16 6 C 0.08 2.05 3.73 31.26 0.12 2.17 16 7 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 8 C 0.06 2.00 5.19 71.98 0.37 2.37 16 9 O -0.36 -15.02 9.45 -55.97 -0.53 -15.55 16 10 C 0.52 24.28 7.89 70.27 0.55 24.84 16 11 O -0.57 -27.70 16.11 19.82 0.32 -27.38 16 12 C -0.29 -14.59 5.89 -19.95 -0.12 -14.71 16 13 C -0.04 -1.99 9.55 22.26 0.21 -1.78 16 14 C -0.20 -10.59 8.64 22.47 0.19 -10.39 16 15 C 0.11 5.53 5.58 -21.27 -0.12 5.41 16 16 C -0.46 -22.84 9.04 23.46 0.21 -22.63 16 17 H 0.10 4.43 7.91 -2.91 -0.02 4.40 16 18 C 0.03 1.59 5.14 85.36 0.44 2.03 16 19 N -0.79 -38.30 10.95 21.87 0.24 -38.06 16 20 Si 0.99 34.20 29.60 68.60 2.03 36.23 16 21 H -0.26 -8.66 7.11 99.48 0.71 -7.95 16 22 H -0.26 -8.61 7.11 99.48 0.71 -7.90 16 23 H -0.25 -8.45 7.11 99.48 0.71 -7.74 16 24 C -0.25 -12.35 9.73 22.47 0.22 -12.13 16 25 C -0.02 -1.07 9.52 22.26 0.21 -0.86 16 26 O -0.40 -12.03 10.71 -148.97 -1.60 -13.62 16 27 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.11 0.92 8.14 -2.39 -0.02 0.91 16 31 H 0.09 1.01 7.85 -2.39 -0.02 1.00 16 32 H 0.09 1.31 8.06 -2.38 -0.02 1.29 16 33 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 36 H 0.11 5.19 7.59 -2.91 -0.02 5.17 16 37 H 0.11 6.00 6.15 -2.91 -0.02 5.98 16 38 H 0.30 12.90 8.29 -92.71 -0.77 12.13 16 39 H 0.12 5.22 8.06 -2.91 -0.02 5.20 16 40 H 0.11 5.15 7.63 -2.91 -0.02 5.12 16 Total: -1.00 -63.56 339.54 5.02 -58.54 By element: Atomic # 1 Polarization: 29.02 SS G_CDS: 1.03 Total: 30.05 kcal Atomic # 6 Polarization: -33.73 SS G_CDS: 3.52 Total: -30.20 kcal Atomic # 7 Polarization: -38.30 SS G_CDS: 0.24 Total: -38.06 kcal Atomic # 8 Polarization: -54.75 SS G_CDS: -1.80 Total: -56.55 kcal Atomic # 14 Polarization: 34.20 SS G_CDS: 2.03 Total: 36.23 kcal Total: -63.56 5.02 -58.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789080726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.443 kcal (2) G-P(sol) polarization free energy of solvation -63.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds