Wall clock time and date at job start Tue Mar 31 2020 05:51:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33082 * 120.00067 * 2 1 4 4 C 1.50701 * 120.00114 * 4.85333 * 3 2 1 5 5 C 1.52998 * 109.47199 * 94.42731 * 4 3 2 6 6 C 1.46955 * 120.00223 * 184.85730 * 3 2 1 7 7 O 1.21540 * 119.99835 * 359.97438 * 6 3 2 8 8 O 1.34799 * 120.00185 * 179.97438 * 6 3 2 9 9 C 1.45193 * 116.99914 * 180.02562 * 8 6 3 10 10 C 1.50708 * 109.47255 * 179.97438 * 9 8 6 11 11 C 1.38298 * 119.92905 * 269.72456 * 10 9 8 12 12 C 1.38100 * 120.06358 * 179.72018 * 11 10 9 13 13 C 1.38880 * 119.93190 * 0.57327 * 12 11 10 14 14 O 1.35750 * 120.06627 * 179.68058 * 13 12 11 15 15 C 1.34836 * 116.99540 * 174.46230 * 14 13 12 16 16 H 1.08000 * 120.00022 * 5.05811 * 15 14 13 17 17 C 1.38653 * 119.99697 * 185.05202 * 15 14 13 18 18 N 1.31556 * 120.00158 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99937 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47047 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46846 * 120.00107 * 19 17 15 22 22 H 1.48498 * 109.47678 * 240.00331 * 19 17 15 23 23 C 1.38879 * 119.86270 * 359.70339 * 13 12 11 24 24 C 1.38095 * 119.92750 * 359.97438 * 23 13 12 25 25 H 1.09009 * 109.46869 * 55.11959 * 1 2 3 26 26 H 1.09000 * 109.47306 * 175.11786 * 1 2 3 27 27 H 1.09001 * 109.47464 * 295.12081 * 1 2 3 28 28 H 1.08004 * 120.00328 * 179.71816 * 2 1 3 29 29 H 1.09002 * 109.47018 * 214.43275 * 4 3 2 30 30 H 1.09007 * 109.46785 * 334.42548 * 4 3 2 31 31 H 1.08997 * 109.47228 * 179.97438 * 5 4 3 32 32 H 1.08996 * 109.47169 * 300.00145 * 5 4 3 33 33 H 1.09004 * 109.46922 * 60.00377 * 5 4 3 34 34 H 1.09002 * 109.47227 * 299.99732 * 9 8 6 35 35 H 1.09002 * 109.47450 * 59.99977 * 9 8 6 36 36 H 1.07997 * 119.96717 * 359.97438 * 11 10 9 37 37 H 1.07998 * 120.03141 * 180.27549 * 12 11 10 38 38 H 0.97002 * 119.99677 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.03384 * 179.97438 * 23 13 12 40 40 H 1.08009 * 119.96337 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1724 1.1525 0.0000 4 6 1.4230 2.4553 0.1104 5 6 1.3710 2.8911 1.5761 6 6 3.6380 1.1548 -0.1078 7 8 4.2424 0.1041 -0.1964 8 8 4.3119 2.3222 -0.1083 9 6 5.7578 2.2486 -0.2184 10 6 6.3344 3.6409 -0.2028 11 6 6.5154 4.3261 -1.3904 12 6 7.0381 5.6043 -1.3789 13 6 7.3934 6.1969 -0.1742 14 8 7.9135 7.4507 -0.1603 15 6 8.1295 8.0104 1.0472 16 1 7.9675 7.4343 1.9462 17 6 8.5596 9.3256 1.1348 18 7 8.7566 10.0276 0.0397 19 14 8.8581 10.1013 2.8077 20 1 8.5654 9.1088 3.8728 21 1 10.2761 10.5309 2.9081 22 1 7.9707 11.2806 2.9720 23 6 7.2158 5.5040 1.0162 24 6 6.6863 4.2287 0.9986 25 1 -0.3633 0.5877 -0.8431 26 1 -0.3634 -1.0239 -0.0875 27 1 -0.3634 0.4363 0.9305 28 1 2.0470 -0.9353 0.0046 29 1 1.9325 3.2185 -0.4778 30 1 0.4084 2.3238 -0.2658 31 1 0.8294 3.8336 1.6559 32 1 0.8615 2.1279 2.1642 33 1 2.3856 3.0226 1.9522 34 1 6.1577 1.6800 0.6213 35 1 6.0265 1.7549 -1.1523 36 1 6.2437 3.8627 -2.3273 37 1 7.1751 6.1406 -2.3063 38 1 9.0571 10.9478 0.1010 39 1 7.4914 5.9620 1.9546 40 1 6.5476 3.6894 1.9241 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789237777.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:16 Heat of formation + Delta-G solvation = -86.918373 kcal Electronic energy + Delta-G solvation = -21942.798529 eV Core-core repulsion = 18495.466322 eV Total energy + Delta-G solvation = -3447.332208 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.37653 -39.08279 -37.24788 -36.43722 -35.86742 -32.44055 -31.58508 -30.57012 -30.23216 -28.25860 -26.04542 -24.89759 -23.45041 -22.42698 -22.05241 -20.58276 -18.69764 -18.07287 -17.34045 -17.17441 -16.74352 -16.17138 -14.95250 -14.72793 -14.59264 -14.37046 -14.03447 -13.71101 -13.66098 -13.41329 -13.23035 -12.91218 -12.78489 -12.73209 -12.43228 -12.30392 -12.22948 -11.73274 -11.39955 -11.25577 -11.08294 -11.01601 -10.79262 -10.69527 -10.47861 -10.40762 -10.33047 -9.40939 -9.36877 -8.91235 -8.26318 -7.32866 -6.52523 -4.11107 0.97622 1.97212 2.15939 2.89132 2.99858 3.10042 3.12625 3.16000 3.91037 4.43892 4.56047 4.70575 4.83267 4.93245 5.03044 5.15471 5.16768 5.22447 5.25757 5.27346 5.29287 5.41974 5.55603 5.63101 5.65952 5.77701 5.82418 5.85028 6.06792 6.13485 6.18807 6.30086 6.33865 6.54795 6.60309 6.81365 6.97538 7.15740 7.27761 7.35884 7.72056 7.83804 7.92515 8.92945 9.61036 10.65082 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024967 B = 0.002938 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.195863 B = 9527.239188 C =10045.553943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.069 4.069 3 C -0.160 4.160 4 C -0.085 4.085 5 C -0.145 4.145 6 C 0.499 3.501 7 O -0.522 6.522 8 O -0.342 6.342 9 C 0.129 3.871 10 C -0.203 4.203 11 C -0.049 4.049 12 C -0.196 4.196 13 C 0.163 3.837 14 O -0.172 6.172 15 C -0.393 4.393 16 H 0.094 0.906 17 C 0.040 3.960 18 N -0.859 5.859 19 Si 0.942 3.058 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.237 4.237 24 C -0.045 4.045 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.127 0.873 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.060 0.940 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.113 0.887 37 H 0.120 0.880 38 H 0.271 0.729 39 H 0.130 0.870 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.108 -15.185 1.325 20.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.088 4.088 3 C -0.162 4.162 4 C -0.123 4.123 5 C -0.203 4.203 6 C 0.345 3.655 7 O -0.413 6.413 8 O -0.259 6.259 9 C 0.056 3.944 10 C -0.204 4.204 11 C -0.067 4.067 12 C -0.215 4.215 13 C 0.108 3.892 14 O -0.075 6.075 15 C -0.469 4.469 16 H 0.112 0.888 17 C -0.165 4.165 18 N -0.493 5.493 19 Si 0.767 3.233 20 H -0.190 1.190 21 H -0.201 1.201 22 H -0.200 1.200 23 C -0.257 4.257 24 C -0.063 4.063 25 H 0.097 0.903 26 H 0.088 0.912 27 H 0.096 0.904 28 H 0.145 0.855 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.131 0.869 37 H 0.138 0.862 38 H 0.081 0.919 39 H 0.147 0.853 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -13.727 -15.041 1.060 20.391 hybrid contribution 0.411 0.275 0.857 0.989 sum -13.317 -14.767 1.916 19.976 Atomic orbital electron populations 1.21009 0.91526 1.03155 1.03025 1.23662 0.96658 0.97491 0.90990 1.20860 0.89696 0.97388 1.08207 1.20536 0.99527 0.93801 0.98405 1.21689 1.02611 1.00898 0.95078 1.21374 0.89192 0.82106 0.72856 1.90820 1.70526 1.33147 1.46853 1.86749 1.23342 1.33083 1.82713 1.21702 0.75211 0.95601 1.01839 1.18862 1.11052 0.96340 0.94124 1.20507 0.96353 0.93238 0.96603 1.20194 1.08611 0.96223 0.96456 1.19436 0.90131 0.86262 0.93342 1.83981 1.68076 1.22951 1.32492 1.21420 1.46746 0.96000 0.82714 0.88829 1.25326 0.96438 0.95221 0.99506 1.70048 1.42008 1.09737 1.27547 0.85623 0.78421 0.79256 0.80003 1.19014 1.20074 1.20045 1.21137 1.09643 0.96122 0.98757 1.20614 0.95406 0.94106 0.96172 0.90341 0.91230 0.90362 0.85514 0.90008 0.90662 0.92037 0.93036 0.92069 0.91295 0.91251 0.86910 0.86215 0.91923 0.85276 0.87370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.74 8.85 36.00 0.32 -0.43 16 2 C -0.07 -0.62 9.83 -36.10 -0.35 -0.97 16 3 C -0.16 -1.78 5.25 -102.89 -0.54 -2.32 16 4 C -0.09 -0.82 5.54 -27.88 -0.15 -0.98 16 5 C -0.15 -1.37 9.89 37.16 0.37 -1.00 16 6 C 0.50 7.21 7.88 34.26 0.27 7.48 16 7 O -0.52 -8.60 16.02 -19.30 -0.31 -8.91 16 8 O -0.34 -5.31 9.55 -40.76 -0.39 -5.70 16 9 C 0.13 1.99 5.60 36.01 0.20 2.20 16 10 C -0.20 -3.57 5.52 -104.57 -0.58 -4.15 16 11 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 12 C -0.20 -4.09 9.99 -39.39 -0.39 -4.48 16 13 C 0.16 3.89 6.65 -39.11 -0.26 3.63 16 14 O -0.17 -4.84 9.76 0.03 0.00 -4.84 16 15 C -0.39 -10.79 9.49 30.89 0.29 -10.49 16 16 H 0.09 2.38 5.20 -52.49 -0.27 2.10 16 17 C 0.04 1.08 5.49 -17.52 -0.10 0.98 16 18 N -0.86 -24.80 13.67 55.48 0.76 -24.04 16 19 Si 0.94 20.16 29.55 -169.99 -5.02 15.13 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 23 C -0.24 -5.09 9.17 -39.40 -0.36 -5.45 16 24 C -0.04 -0.82 9.69 -39.61 -0.38 -1.21 16 25 H 0.08 0.40 7.34 -51.92 -0.38 0.02 16 26 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.13 1.19 7.50 -52.48 -0.39 0.79 16 29 H 0.08 0.90 7.81 -51.93 -0.41 0.49 16 30 H 0.07 0.55 6.23 -51.93 -0.32 0.23 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 34 H 0.07 1.01 8.08 -51.93 -0.42 0.60 16 35 H 0.07 1.01 8.08 -51.93 -0.42 0.59 16 36 H 0.11 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 38 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 39 H 0.13 2.76 5.64 -52.49 -0.30 2.46 16 40 H 0.11 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 347.49 15.07 5.24 5.24 Total: -1.00 -31.28 347.49 -7.21 -38.49 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -5.43 Total: 3.10 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: -2.05 Total: -18.46 kcal Atomic # 7 Polarization: -24.80 SS G_CDS: 0.76 Total: -24.04 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: -0.70 Total: -19.45 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.13 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.28 -7.21 -38.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789237777.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.432 kcal (2) G-P(sol) polarization free energy of solvation -31.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds