Wall clock time and date at job start Tue Mar 31 2020 05:51:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33082 * 120.00067 * 2 1 4 4 C 1.50701 * 120.00114 * 4.85333 * 3 2 1 5 5 C 1.52998 * 109.47199 * 94.42731 * 4 3 2 6 6 C 1.46955 * 120.00223 * 184.85730 * 3 2 1 7 7 O 1.21540 * 119.99835 * 359.97438 * 6 3 2 8 8 O 1.34799 * 120.00185 * 179.97438 * 6 3 2 9 9 C 1.45193 * 116.99914 * 180.02562 * 8 6 3 10 10 C 1.50708 * 109.47255 * 179.97438 * 9 8 6 11 11 C 1.38298 * 119.92905 * 269.72456 * 10 9 8 12 12 C 1.38100 * 120.06358 * 179.72018 * 11 10 9 13 13 C 1.38880 * 119.93190 * 0.57327 * 12 11 10 14 14 O 1.35750 * 120.06627 * 179.68058 * 13 12 11 15 15 C 1.34836 * 116.99540 * 174.46230 * 14 13 12 16 16 H 1.08000 * 120.00022 * 5.05811 * 15 14 13 17 17 C 1.38653 * 119.99697 * 185.05202 * 15 14 13 18 18 N 1.31556 * 120.00158 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99937 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47047 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46846 * 120.00107 * 19 17 15 22 22 H 1.48498 * 109.47678 * 240.00331 * 19 17 15 23 23 C 1.38879 * 119.86270 * 359.70339 * 13 12 11 24 24 C 1.38095 * 119.92750 * 359.97438 * 23 13 12 25 25 H 1.09009 * 109.46869 * 55.11959 * 1 2 3 26 26 H 1.09000 * 109.47306 * 175.11786 * 1 2 3 27 27 H 1.09001 * 109.47464 * 295.12081 * 1 2 3 28 28 H 1.08004 * 120.00328 * 179.71816 * 2 1 3 29 29 H 1.09002 * 109.47018 * 214.43275 * 4 3 2 30 30 H 1.09007 * 109.46785 * 334.42548 * 4 3 2 31 31 H 1.08997 * 109.47228 * 179.97438 * 5 4 3 32 32 H 1.08996 * 109.47169 * 300.00145 * 5 4 3 33 33 H 1.09004 * 109.46922 * 60.00377 * 5 4 3 34 34 H 1.09002 * 109.47227 * 299.99732 * 9 8 6 35 35 H 1.09002 * 109.47450 * 59.99977 * 9 8 6 36 36 H 1.07997 * 119.96717 * 359.97438 * 11 10 9 37 37 H 1.07998 * 120.03141 * 180.27549 * 12 11 10 38 38 H 0.97002 * 119.99677 * 179.97438 * 18 17 15 39 39 H 1.07997 * 120.03384 * 179.97438 * 23 13 12 40 40 H 1.08009 * 119.96337 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1724 1.1525 0.0000 4 6 1.4230 2.4553 0.1104 5 6 1.3710 2.8911 1.5761 6 6 3.6380 1.1548 -0.1078 7 8 4.2424 0.1041 -0.1964 8 8 4.3119 2.3222 -0.1083 9 6 5.7578 2.2486 -0.2184 10 6 6.3344 3.6409 -0.2028 11 6 6.5154 4.3261 -1.3904 12 6 7.0381 5.6043 -1.3789 13 6 7.3934 6.1969 -0.1742 14 8 7.9135 7.4507 -0.1603 15 6 8.1295 8.0104 1.0472 16 1 7.9675 7.4343 1.9462 17 6 8.5596 9.3256 1.1348 18 7 8.7566 10.0276 0.0397 19 14 8.8581 10.1013 2.8077 20 1 8.5654 9.1088 3.8728 21 1 10.2761 10.5309 2.9081 22 1 7.9707 11.2806 2.9720 23 6 7.2158 5.5040 1.0162 24 6 6.6863 4.2287 0.9986 25 1 -0.3633 0.5877 -0.8431 26 1 -0.3634 -1.0239 -0.0875 27 1 -0.3634 0.4363 0.9305 28 1 2.0470 -0.9353 0.0046 29 1 1.9325 3.2185 -0.4778 30 1 0.4084 2.3238 -0.2658 31 1 0.8294 3.8336 1.6559 32 1 0.8615 2.1279 2.1642 33 1 2.3856 3.0226 1.9522 34 1 6.1577 1.6800 0.6213 35 1 6.0265 1.7549 -1.1523 36 1 6.2437 3.8627 -2.3273 37 1 7.1751 6.1406 -2.3063 38 1 9.0571 10.9478 0.1010 39 1 7.4914 5.9620 1.9546 40 1 6.5476 3.6894 1.9241 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789237777.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:51:15 Heat of formation + Delta-G solvation = -103.506924 kcal Electronic energy + Delta-G solvation = -21943.517863 eV Core-core repulsion = 18495.466322 eV Total energy + Delta-G solvation = -3448.051541 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.53579 -40.78581 -38.68186 -37.60509 -37.00046 -34.37807 -32.35610 -32.03465 -31.83835 -29.07180 -27.75335 -26.49292 -24.16489 -23.71056 -23.49627 -22.16225 -19.92924 -19.64100 -18.93268 -18.35822 -17.83984 -17.39638 -16.44960 -16.32930 -16.08649 -15.59499 -15.41376 -15.22480 -14.73798 -14.60451 -14.35825 -14.15697 -13.95721 -13.79637 -13.52544 -13.48238 -13.13067 -13.03879 -12.93469 -12.65616 -12.43947 -12.29728 -12.10373 -11.98197 -11.80096 -11.68660 -11.37516 -11.22078 -10.83539 -10.11201 -9.86368 -9.08094 -8.50058 -6.18513 0.11091 0.41925 0.53353 1.35602 1.42500 1.53838 1.86527 1.89778 2.16241 2.80955 3.12725 3.43765 3.66842 3.83857 3.88165 3.88864 4.12039 4.18808 4.26207 4.29026 4.39728 4.52104 4.53254 4.62290 4.71655 4.73208 4.84211 4.96574 5.05601 5.10829 5.12263 5.17679 5.20106 5.35672 5.37607 5.46662 5.50054 5.61588 5.63777 5.66890 5.99103 6.09393 6.71749 6.94524 7.72122 8.72895 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.024967 B = 0.002938 C = 0.002787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1121.195863 B = 9527.239188 C =10045.553943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.040 4.040 3 C -0.191 4.191 4 C -0.080 4.080 5 C -0.145 4.145 6 C 0.497 3.503 7 O -0.549 6.549 8 O -0.351 6.351 9 C 0.129 3.871 10 C -0.181 4.181 11 C -0.041 4.041 12 C -0.204 4.204 13 C 0.127 3.873 14 O -0.225 6.225 15 C -0.415 4.415 16 H 0.104 0.896 17 C -0.021 4.021 18 N -0.918 5.918 19 Si 1.019 2.981 20 H -0.251 1.251 21 H -0.268 1.268 22 H -0.268 1.268 23 C -0.244 4.244 24 C -0.043 4.043 25 H 0.091 0.909 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.121 0.879 29 H 0.062 0.938 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.036 0.964 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.148 0.852 37 H 0.120 0.880 38 H 0.274 0.726 39 H 0.125 0.875 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.518 -17.777 2.343 24.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.059 4.059 3 C -0.192 4.192 4 C -0.117 4.117 5 C -0.202 4.202 6 C 0.345 3.655 7 O -0.442 6.442 8 O -0.268 6.268 9 C 0.057 3.943 10 C -0.182 4.182 11 C -0.059 4.059 12 C -0.223 4.223 13 C 0.075 3.925 14 O -0.131 6.131 15 C -0.491 4.491 16 H 0.121 0.879 17 C -0.219 4.219 18 N -0.555 5.555 19 Si 0.838 3.162 20 H -0.174 1.174 21 H -0.193 1.193 22 H -0.193 1.193 23 C -0.263 4.263 24 C -0.061 4.061 25 H 0.109 0.891 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.139 0.861 29 H 0.081 0.919 30 H 0.121 0.879 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.166 0.834 37 H 0.138 0.862 38 H 0.083 0.917 39 H 0.142 0.858 40 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.166 -17.692 2.074 24.055 hybrid contribution 0.955 0.650 0.436 1.235 sum -15.211 -17.042 2.509 22.980 Atomic orbital electron populations 1.21143 0.88699 1.04784 1.04128 1.23999 0.98563 0.96377 0.86914 1.20874 0.87757 0.98844 1.11693 1.20513 1.00525 0.92492 0.98145 1.21695 1.01382 1.01852 0.95305 1.22000 0.90420 0.81202 0.71879 1.90804 1.71246 1.33677 1.48518 1.86722 1.22937 1.34062 1.83078 1.21653 0.75688 0.93828 1.03172 1.19226 1.08399 0.96950 0.93592 1.20883 0.94674 0.91927 0.98465 1.20440 1.08725 0.97447 0.95726 1.19974 0.91444 0.85728 0.95312 1.83954 1.71098 1.25070 1.33018 1.21896 1.47225 0.96779 0.83201 0.87881 1.26606 0.95899 0.95432 1.03946 1.70185 1.44676 1.10354 1.30329 0.84520 0.78510 0.78340 0.74787 1.17406 1.19326 1.19285 1.21230 1.09952 0.97257 0.97830 1.20934 0.94177 0.93003 0.98015 0.89057 0.89533 0.88975 0.86119 0.91947 0.87941 0.91380 0.91472 0.94497 0.90222 0.89911 0.83388 0.86161 0.91706 0.85777 0.84310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.93 8.85 71.23 0.63 -0.30 16 2 C -0.04 -0.59 9.83 24.53 0.24 -0.35 16 3 C -0.19 -3.79 5.25 -18.73 -0.10 -3.88 16 4 C -0.08 -1.35 5.54 29.85 0.17 -1.18 16 5 C -0.15 -2.44 9.89 71.98 0.71 -1.73 16 6 C 0.50 13.51 7.88 70.11 0.55 14.06 16 7 O -0.55 -17.20 16.02 19.71 0.32 -16.88 16 8 O -0.35 -10.23 9.55 -57.11 -0.55 -10.77 16 9 C 0.13 3.66 5.60 71.24 0.40 4.06 16 10 C -0.18 -5.99 5.52 -19.83 -0.11 -6.10 16 11 C -0.04 -1.42 9.69 22.25 0.22 -1.21 16 12 C -0.20 -8.65 9.99 22.39 0.22 -8.42 16 13 C 0.13 6.26 6.65 22.58 0.15 6.41 16 14 O -0.23 -13.43 9.76 -22.81 -0.22 -13.66 16 15 C -0.42 -23.90 9.49 67.92 0.64 -23.26 16 16 H 0.10 5.44 5.20 -2.91 -0.02 5.43 16 17 C -0.02 -1.17 5.49 84.83 0.47 -0.71 16 18 N -0.92 -55.77 13.67 21.61 0.30 -55.47 16 19 Si 1.02 42.31 29.55 68.60 2.03 44.34 16 20 H -0.25 -9.60 7.11 99.48 0.71 -8.90 16 21 H -0.27 -10.69 7.11 99.48 0.71 -9.98 16 22 H -0.27 -10.67 7.11 99.48 0.71 -9.96 16 23 C -0.24 -10.57 9.17 22.39 0.21 -10.37 16 24 C -0.04 -1.53 9.69 22.25 0.22 -1.32 16 25 H 0.09 0.51 7.34 -2.38 -0.02 0.49 16 26 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 27 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 28 H 0.12 1.95 7.50 -2.91 -0.02 1.93 16 29 H 0.06 1.29 7.81 -2.39 -0.02 1.27 16 30 H 0.10 1.14 6.23 -2.38 -0.01 1.12 16 31 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.08 2.12 8.08 -2.39 -0.02 2.10 16 35 H 0.08 2.16 8.08 -2.39 -0.02 2.14 16 36 H 0.15 4.04 8.06 -2.91 -0.02 4.02 16 37 H 0.12 4.97 8.06 -2.91 -0.02 4.95 16 38 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.12 5.43 5.64 -2.91 -0.02 5.41 16 40 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 Total: -1.00 -72.32 347.49 7.52 -64.79 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: 1.04 Total: 21.93 kcal Atomic # 6 Polarization: -38.90 SS G_CDS: 4.61 Total: -34.28 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: 0.30 Total: -55.47 kcal Atomic # 8 Polarization: -40.86 SS G_CDS: -0.45 Total: -41.31 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -72.32 7.52 -64.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789237777.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.715 kcal (2) G-P(sol) polarization free energy of solvation -72.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds