Wall clock time and date at job start Tue Mar 31 2020 06:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46968 * 2 1 4 4 C 1.50697 * 109.47489 * 119.99778 * 2 1 3 5 5 H 1.07998 * 119.99921 * 120.00308 * 4 2 1 6 6 C 1.37884 * 119.99984 * 300.00633 * 4 2 1 7 7 N 1.31511 * 119.99867 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00031 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46883 * 89.99814 * 8 6 4 10 10 H 1.48496 * 109.47064 * 209.99915 * 8 6 4 11 11 H 1.48503 * 109.47112 * 330.00242 * 8 6 4 12 12 O 1.45201 * 109.47604 * 240.00007 * 2 1 3 13 13 C 1.34757 * 116.99973 * 89.99641 * 12 2 1 14 14 O 1.21514 * 119.99912 * 0.02562 * 13 12 2 15 15 C 1.47397 * 120.00089 * 180.02562 * 13 12 2 16 16 C 1.39588 * 120.05884 * 0.02588 * 15 13 12 17 17 C 1.37760 * 120.18100 * 179.97438 * 16 15 13 18 18 C 1.38656 * 119.98324 * 359.86416 * 17 16 15 19 19 C 1.37655 * 120.33312 * 359.95740 * 18 17 16 20 20 C 1.38878 * 120.87754 * 0.39120 * 19 18 17 21 21 O 1.35840 * 111.33035 * 179.40089 * 20 19 18 22 22 C 1.43765 * 109.32348 * 18.60254 * 21 20 19 23 23 C 1.51676 * 132.14336 * 180.41628 * 19 18 17 24 24 C 1.53008 * 110.94916 * 46.15072 * 23 19 18 25 25 C 1.52997 * 110.98111 * 282.45667 * 23 19 18 26 26 H 1.08990 * 109.47318 * 299.99997 * 1 2 3 27 27 H 1.08998 * 109.46879 * 60.00476 * 1 2 3 28 28 H 1.08998 * 109.46496 * 179.97438 * 1 2 3 29 29 H 0.96994 * 120.00174 * 179.97438 * 7 6 4 30 30 H 1.08000 * 119.90698 * 359.95886 * 16 15 13 31 31 H 1.07999 * 120.00608 * 179.82149 * 17 16 15 32 32 H 1.08004 * 119.83635 * 180.02562 * 18 17 16 33 33 H 1.09005 * 110.74939 * 90.77640 * 22 21 20 34 34 H 1.09000 * 110.74699 * 214.13313 * 22 21 20 35 35 H 1.09001 * 109.46900 * 173.93957 * 24 23 19 36 36 H 1.08995 * 109.47168 * 293.93923 * 24 23 19 37 37 H 1.09001 * 109.46745 * 53.93585 * 24 23 19 38 38 H 1.09003 * 109.47270 * 306.03764 * 25 23 19 39 39 H 1.08998 * 109.47742 * 66.03997 * 25 23 19 40 40 H 1.09005 * 109.47182 * 186.04358 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6534 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3215 -1.1202 4.0080 9 1 3.6297 -0.5456 4.4123 10 1 1.3432 -0.9492 5.1120 11 1 2.4861 -2.5661 3.7120 12 8 2.0141 -0.6845 -1.1855 13 6 2.2180 0.0670 -2.2854 14 8 1.9978 1.2616 -2.2545 15 6 2.7083 -0.5602 -3.5260 16 6 2.9612 -1.9324 -3.5630 17 6 3.4189 -2.5212 -4.7213 18 6 3.6268 -1.7506 -5.8551 19 6 3.3772 -0.3971 -5.8310 20 6 2.9221 0.2233 -4.6748 21 8 2.7533 1.5579 -4.8639 22 6 2.6752 1.8326 -6.2728 23 6 3.4996 0.6794 -6.8925 24 6 2.8845 0.2163 -8.2148 25 6 4.9596 1.0935 -7.0869 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 0.7088 1.1613 3.4843 30 1 2.7978 -2.5341 -2.6812 31 1 3.6164 -3.5827 -4.7460 32 1 3.9853 -2.2148 -6.7620 33 1 1.6414 1.7965 -6.6166 34 1 3.1267 2.7975 -6.5037 35 1 2.8882 1.0422 -8.9261 36 1 3.4681 -0.6119 -8.6166 37 1 1.8591 -0.1112 -8.0434 38 1 5.3870 1.3803 -6.1260 39 1 5.5228 0.2567 -7.4998 40 1 5.0092 1.9389 -7.7733 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000789426302.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:35 Heat of formation + Delta-G solvation = -99.652783 kcal Electronic energy + Delta-G solvation = -23143.679737 eV Core-core repulsion = 19695.795323 eV Total energy + Delta-G solvation = -3447.884413 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.51816 -39.21813 -37.31096 -35.66824 -35.09303 -33.19566 -30.88051 -29.84399 -29.32364 -27.66030 -26.65095 -25.28108 -24.33241 -22.47378 -21.66040 -20.39747 -19.06995 -17.27682 -17.09614 -16.61883 -16.23425 -16.00218 -15.46250 -14.98315 -14.77686 -14.43403 -14.22607 -13.86765 -13.54441 -13.11969 -12.96601 -12.89089 -12.41010 -12.27931 -12.04339 -11.86870 -11.69051 -11.58461 -11.19261 -11.17761 -11.02659 -10.98217 -10.80646 -10.72702 -10.31098 -10.24183 -9.54296 -9.45563 -8.93366 -8.84183 -8.44587 -8.18466 -6.13934 -4.20625 0.91602 1.31599 3.08986 3.26004 3.27650 3.32567 3.36512 3.67720 3.95898 4.04858 4.30554 4.37869 4.63712 4.74325 4.90414 5.08649 5.17250 5.19055 5.24870 5.28211 5.31791 5.47291 5.49025 5.52060 5.60483 5.70188 5.84377 5.95757 5.97487 6.25046 6.31738 6.41337 6.60503 6.71280 6.95545 6.98239 7.13007 7.24069 7.64699 7.78777 7.99879 8.19570 8.71196 8.95069 9.44502 10.93672 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030216 B = 0.003735 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.428709 B = 7495.097596 C = 7929.075189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.216 3.784 3 H 0.047 0.953 4 C -0.519 4.519 5 H 0.069 0.931 6 C 0.062 3.938 7 N -0.889 5.889 8 Si 0.912 3.088 9 H -0.278 1.278 10 H -0.284 1.284 11 H -0.271 1.271 12 O -0.354 6.354 13 C 0.493 3.507 14 O -0.506 6.506 15 C -0.136 4.136 16 C -0.028 4.028 17 C -0.166 4.166 18 C -0.041 4.041 19 C -0.185 4.185 20 C 0.170 3.830 21 O -0.274 6.274 22 C 0.051 3.949 23 C -0.052 4.052 24 C -0.134 4.134 25 C -0.135 4.135 26 H 0.099 0.901 27 H 0.016 0.984 28 H 0.036 0.964 29 H 0.266 0.734 30 H 0.150 0.850 31 H 0.134 0.866 32 H 0.125 0.875 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.234 -3.717 -21.489 22.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.164 3.836 3 H 0.064 0.936 4 C -0.558 4.558 5 H 0.087 0.913 6 C -0.140 4.140 7 N -0.527 5.527 8 Si 0.739 3.261 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.196 1.196 12 O -0.270 6.270 13 C 0.337 3.663 14 O -0.396 6.396 15 C -0.138 4.138 16 C -0.046 4.046 17 C -0.184 4.184 18 C -0.059 4.059 19 C -0.185 4.185 20 C 0.122 3.878 21 O -0.186 6.186 22 C -0.024 4.024 23 C -0.052 4.052 24 C -0.191 4.191 25 C -0.192 4.192 26 H 0.117 0.883 27 H 0.035 0.965 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.167 0.833 31 H 0.152 0.848 32 H 0.143 0.857 33 H 0.098 0.902 34 H 0.125 0.875 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.036 -3.038 -21.116 21.920 hybrid contribution 0.209 -0.269 0.758 0.831 sum 5.245 -3.307 -20.358 21.281 Atomic orbital electron populations 1.22154 0.97594 1.00065 1.01384 1.20629 0.91362 0.94002 0.77642 0.93554 1.21027 1.32395 1.13456 0.88876 0.91294 1.24890 0.94955 0.95123 0.99045 1.69903 1.36091 1.22603 1.24115 0.86273 0.78525 0.79887 0.81437 1.20426 1.20982 1.19585 1.86523 1.76225 1.43208 1.21077 1.20796 0.75588 0.85416 0.84533 1.90815 1.48248 1.15947 1.84572 1.18761 1.10264 0.93246 0.91483 1.21378 0.92176 0.92231 0.98793 1.20994 1.04398 1.00350 0.92627 1.20416 0.95832 0.91325 0.98350 1.20601 1.07583 0.95145 0.95220 1.19472 0.91499 0.83546 0.93244 1.87022 1.86933 1.19324 1.25280 1.24095 1.00539 0.99114 0.78661 1.20801 0.97181 0.92490 0.94699 1.21756 1.00998 1.01534 0.94824 1.21793 0.93436 1.01515 1.02423 0.88263 0.96529 0.94446 0.92435 0.83264 0.84814 0.85680 0.90234 0.87455 0.91879 0.91829 0.92001 0.91919 0.91863 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.07 9.33 37.16 0.35 -3.73 16 2 C 0.22 6.05 2.56 -27.88 -0.07 5.98 16 3 H 0.05 1.44 7.16 -51.93 -0.37 1.07 16 4 C -0.52 -14.94 8.90 -34.44 -0.31 -15.24 16 5 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.83 11.32 55.43 0.63 -25.20 16 8 Si 0.91 21.40 29.54 -169.99 -5.02 16.38 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 O -0.35 -8.88 9.09 -40.65 -0.37 -9.25 16 13 C 0.49 11.59 7.86 34.46 0.27 11.86 16 14 O -0.51 -13.34 15.12 -24.90 -0.38 -13.72 16 15 C -0.14 -2.53 5.89 -104.74 -0.62 -3.15 16 16 C -0.03 -0.42 9.59 -39.25 -0.38 -0.79 16 17 C -0.17 -1.91 10.05 -39.60 -0.40 -2.31 16 18 C -0.04 -0.45 9.91 -39.64 -0.39 -0.84 16 19 C -0.18 -2.34 5.05 -104.12 -0.53 -2.86 16 20 C 0.17 2.86 6.73 -38.42 -0.26 2.60 16 21 O -0.27 -4.73 10.12 -34.86 -0.35 -5.08 16 22 C 0.05 0.58 7.10 38.06 0.27 0.85 16 23 C -0.05 -0.51 1.03 -154.28 -0.16 -0.66 16 24 C -0.13 -0.96 8.53 37.16 0.32 -0.65 16 25 C -0.13 -1.15 8.61 37.16 0.32 -0.83 16 26 H 0.10 2.77 6.07 -51.93 -0.32 2.46 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 29 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 30 H 0.15 2.20 7.59 -52.49 -0.40 1.80 16 31 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 32 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 33 H 0.08 0.81 7.92 -51.93 -0.41 0.40 16 34 H 0.11 0.97 7.92 -51.93 -0.41 0.56 16 35 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 336.98 15.07 5.08 5.08 Total: -1.00 -33.49 336.98 -7.77 -41.26 By element: Atomic # 1 Polarization: 4.34 SS G_CDS: -5.68 Total: -1.34 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: -1.67 Total: -8.13 kcal Atomic # 7 Polarization: -25.83 SS G_CDS: 0.63 Total: -25.20 kcal Atomic # 8 Polarization: -26.95 SS G_CDS: -1.10 Total: -28.05 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.49 -7.77 -41.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789426302.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.394 kcal (2) G-P(sol) polarization free energy of solvation -33.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds