Wall clock time and date at job start Tue Mar 31 2020 06:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09003 * 109.46968 * 2 1 4 4 C 1.50697 * 109.47489 * 119.99778 * 2 1 3 5 5 H 1.07998 * 119.99921 * 120.00308 * 4 2 1 6 6 C 1.37884 * 119.99984 * 300.00633 * 4 2 1 7 7 N 1.31511 * 119.99867 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00031 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46883 * 89.99814 * 8 6 4 10 10 H 1.48496 * 109.47064 * 209.99915 * 8 6 4 11 11 H 1.48503 * 109.47112 * 330.00242 * 8 6 4 12 12 O 1.45201 * 109.47604 * 240.00007 * 2 1 3 13 13 C 1.34757 * 116.99973 * 89.99641 * 12 2 1 14 14 O 1.21514 * 119.99912 * 0.02562 * 13 12 2 15 15 C 1.47397 * 120.00089 * 180.02562 * 13 12 2 16 16 C 1.39588 * 120.05884 * 0.02588 * 15 13 12 17 17 C 1.37760 * 120.18100 * 179.97438 * 16 15 13 18 18 C 1.38656 * 119.98324 * 359.86416 * 17 16 15 19 19 C 1.37655 * 120.33312 * 359.95740 * 18 17 16 20 20 C 1.38878 * 120.87754 * 0.39120 * 19 18 17 21 21 O 1.35840 * 111.33035 * 179.40089 * 20 19 18 22 22 C 1.43765 * 109.32348 * 18.60254 * 21 20 19 23 23 C 1.51676 * 132.14336 * 180.41628 * 19 18 17 24 24 C 1.53008 * 110.94916 * 46.15072 * 23 19 18 25 25 C 1.52997 * 110.98111 * 282.45667 * 23 19 18 26 26 H 1.08990 * 109.47318 * 299.99997 * 1 2 3 27 27 H 1.08998 * 109.46879 * 60.00476 * 1 2 3 28 28 H 1.08998 * 109.46496 * 179.97438 * 1 2 3 29 29 H 0.96994 * 120.00174 * 179.97438 * 7 6 4 30 30 H 1.08000 * 119.90698 * 359.95886 * 16 15 13 31 31 H 1.07999 * 120.00608 * 179.82149 * 17 16 15 32 32 H 1.08004 * 119.83635 * 180.02562 * 18 17 16 33 33 H 1.09005 * 110.74939 * 90.77640 * 22 21 20 34 34 H 1.09000 * 110.74699 * 214.13313 * 22 21 20 35 35 H 1.09001 * 109.46900 * 173.93957 * 24 23 19 36 36 H 1.08995 * 109.47168 * 293.93923 * 24 23 19 37 37 H 1.09001 * 109.46745 * 53.93585 * 24 23 19 38 38 H 1.09003 * 109.47270 * 306.03764 * 25 23 19 39 39 H 1.08998 * 109.47742 * 66.03997 * 25 23 19 40 40 H 1.09005 * 109.47182 * 186.04358 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2304 5 1 2.6534 -1.5884 1.1313 6 6 1.6993 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3215 -1.1202 4.0080 9 1 3.6297 -0.5456 4.4123 10 1 1.3432 -0.9492 5.1120 11 1 2.4861 -2.5661 3.7120 12 8 2.0141 -0.6845 -1.1855 13 6 2.2180 0.0670 -2.2854 14 8 1.9978 1.2616 -2.2545 15 6 2.7083 -0.5602 -3.5260 16 6 2.9612 -1.9324 -3.5630 17 6 3.4189 -2.5212 -4.7213 18 6 3.6268 -1.7506 -5.8551 19 6 3.3772 -0.3971 -5.8310 20 6 2.9221 0.2233 -4.6748 21 8 2.7533 1.5579 -4.8639 22 6 2.6752 1.8326 -6.2728 23 6 3.4996 0.6794 -6.8925 24 6 2.8845 0.2163 -8.2148 25 6 4.9596 1.0935 -7.0869 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 0.7088 1.1613 3.4843 30 1 2.7978 -2.5341 -2.6812 31 1 3.6164 -3.5827 -4.7460 32 1 3.9853 -2.2148 -6.7620 33 1 1.6414 1.7965 -6.6166 34 1 3.1267 2.7975 -6.5037 35 1 2.8882 1.0422 -8.9261 36 1 3.4681 -0.6119 -8.6166 37 1 1.8591 -0.1112 -8.0434 38 1 5.3870 1.3803 -6.1260 39 1 5.5228 0.2567 -7.4998 40 1 5.0092 1.9389 -7.7733 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789426302.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:34 Heat of formation + Delta-G solvation = -119.172170 kcal Electronic energy + Delta-G solvation = -23144.526161 eV Core-core repulsion = 19695.795323 eV Total energy + Delta-G solvation = -3448.730837 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.58637 -41.06792 -38.45399 -37.55721 -36.10461 -35.34348 -32.29562 -31.28202 -30.86562 -28.24544 -27.50527 -27.46740 -25.75820 -23.79951 -23.02125 -22.03089 -20.48367 -18.85415 -18.56812 -18.14568 -17.69578 -17.16280 -17.09911 -16.67639 -16.34530 -15.95302 -15.16853 -14.86531 -14.64070 -14.58319 -14.23306 -14.03707 -13.85405 -13.67308 -13.28447 -13.21091 -13.01492 -12.88664 -12.84682 -12.72624 -12.41502 -12.36946 -12.15401 -11.97203 -11.87664 -11.66862 -11.61248 -11.31923 -11.01789 -10.63154 -10.05630 -9.27176 -8.30611 -6.48480 -0.31627 0.25820 1.40391 1.43643 1.55073 1.59165 1.94249 2.21194 2.40277 2.68459 2.99866 3.20036 3.46366 3.77711 3.86672 3.92344 4.11891 4.25621 4.30968 4.38939 4.47316 4.50080 4.55788 4.70938 4.74418 4.79139 4.80310 4.92816 4.97304 5.04297 5.07360 5.19530 5.24191 5.32136 5.36601 5.39154 5.44903 5.57068 5.62128 5.86194 6.01866 6.07812 6.56955 6.92084 7.23230 8.77868 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030216 B = 0.003735 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 926.428709 B = 7495.097596 C = 7929.075189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.217 3.783 3 H 0.001 0.999 4 C -0.548 4.548 5 H 0.070 0.930 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.989 3.011 9 H -0.272 1.272 10 H -0.274 1.274 11 H -0.259 1.259 12 O -0.356 6.356 13 C 0.485 3.515 14 O -0.550 6.550 15 C -0.178 4.178 16 C -0.038 4.038 17 C -0.148 4.148 18 C -0.021 4.021 19 C -0.178 4.178 20 C 0.144 3.856 21 O -0.318 6.318 22 C 0.037 3.963 23 C -0.043 4.043 24 C -0.129 4.129 25 C -0.132 4.132 26 H 0.083 0.917 27 H 0.017 0.983 28 H 0.049 0.951 29 H 0.272 0.728 30 H 0.144 0.856 31 H 0.176 0.824 32 H 0.175 0.825 33 H 0.086 0.914 34 H 0.125 0.875 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.055 0.945 38 H 0.035 0.965 39 H 0.082 0.918 40 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.698 -6.309 -24.067 25.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.164 3.836 3 H 0.019 0.981 4 C -0.586 4.586 5 H 0.089 0.911 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.811 3.189 9 H -0.198 1.198 10 H -0.199 1.199 11 H -0.183 1.183 12 O -0.272 6.272 13 C 0.333 3.667 14 O -0.443 6.443 15 C -0.180 4.180 16 C -0.056 4.056 17 C -0.165 4.165 18 C -0.039 4.039 19 C -0.179 4.179 20 C 0.097 3.903 21 O -0.231 6.231 22 C -0.037 4.037 23 C -0.043 4.043 24 C -0.186 4.186 25 C -0.189 4.189 26 H 0.102 0.898 27 H 0.036 0.964 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.161 0.839 31 H 0.194 0.806 32 H 0.193 0.807 33 H 0.104 0.896 34 H 0.143 0.857 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.074 0.926 38 H 0.054 0.946 39 H 0.100 0.900 40 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.499 -5.640 -23.728 25.240 hybrid contribution -0.220 0.590 1.409 1.543 sum 6.279 -5.049 -22.319 23.729 Atomic orbital electron populations 1.21972 0.96710 1.00507 1.00587 1.20379 0.92107 0.91980 0.79151 0.98116 1.21289 1.33574 1.14023 0.89698 0.91133 1.25920 0.94615 0.95685 1.02312 1.70032 1.36570 1.23766 1.25317 0.85102 0.78071 0.78990 0.76748 1.19768 1.19859 1.18307 1.86512 1.76561 1.43051 1.21098 1.21843 0.74438 0.85177 0.85273 1.90765 1.50553 1.17789 1.85239 1.18758 1.14282 0.95162 0.89803 1.21455 0.93097 0.90601 1.00479 1.21451 1.01763 1.02289 0.91013 1.21011 0.92917 0.90259 0.99680 1.21082 1.06019 0.96497 0.94301 1.19805 0.92587 0.83830 0.94110 1.86958 1.87188 1.20160 1.28833 1.24500 1.01802 1.01044 0.76335 1.20883 0.97930 0.90468 0.95064 1.21765 1.00621 1.02958 0.93275 1.21808 0.92343 1.03148 1.01641 0.89827 0.96424 0.93183 0.91916 0.83866 0.80629 0.80731 0.89566 0.85679 0.90004 0.89784 0.92636 0.94595 0.89957 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.80 9.33 71.98 0.67 -7.13 16 2 C 0.22 12.96 2.56 29.85 0.08 13.04 16 3 H 0.00 0.07 7.16 -2.39 -0.02 0.05 16 4 C -0.55 -32.70 8.90 25.60 0.23 -32.47 16 5 H 0.07 4.07 7.81 -2.91 -0.02 4.05 16 6 C 0.01 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -54.97 11.32 21.45 0.24 -54.72 16 8 Si 0.99 44.07 29.54 68.60 2.03 46.10 16 9 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 10 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 12 O -0.36 -19.11 9.09 -56.67 -0.52 -19.62 16 13 C 0.49 24.73 7.86 70.23 0.55 25.28 16 14 O -0.55 -31.83 15.12 25.16 0.38 -31.45 16 15 C -0.18 -6.99 5.89 -19.94 -0.12 -7.11 16 16 C -0.04 -1.14 9.59 22.48 0.22 -0.93 16 17 C -0.15 -2.89 10.05 22.26 0.22 -2.66 16 18 C -0.02 -0.36 9.91 22.23 0.22 -0.14 16 19 C -0.18 -4.14 5.05 -19.54 -0.10 -4.24 16 20 C 0.14 4.99 6.73 23.02 0.16 5.14 16 21 O -0.32 -11.65 10.12 -76.81 -0.78 -12.43 16 22 C 0.04 0.84 7.10 72.57 0.52 1.35 16 23 C -0.04 -0.74 1.03 -52.03 -0.05 -0.79 16 24 C -0.13 -1.31 8.53 71.98 0.61 -0.69 16 25 C -0.13 -1.87 8.61 71.98 0.62 -1.25 16 26 H 0.08 4.91 6.07 -2.39 -0.01 4.89 16 27 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.05 2.58 8.14 -2.39 -0.02 2.56 16 29 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 30 H 0.14 4.33 7.59 -2.91 -0.02 4.31 16 31 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 32 H 0.18 1.40 8.06 -2.91 -0.02 1.37 16 33 H 0.09 1.74 7.92 -2.38 -0.02 1.72 16 34 H 0.13 2.21 7.92 -2.39 -0.02 2.19 16 35 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 37 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.03 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 40 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 Total: -1.00 -80.11 336.98 6.66 -73.45 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 1.03 Total: 10.02 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: 4.27 Total: -11.34 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.24 Total: -54.72 kcal Atomic # 8 Polarization: -62.59 SS G_CDS: -0.91 Total: -63.51 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 2.03 Total: 46.10 kcal Total: -80.11 6.66 -73.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789426302.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.720 kcal (2) G-P(sol) polarization free energy of solvation -80.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds