Wall clock time and date at job start Tue Mar 31 2020 06:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.47073 * 2 1 4 4 C 1.50698 * 109.47051 * 239.99689 * 2 1 3 5 5 H 1.08000 * 120.00070 * 240.00280 * 4 2 1 6 6 C 1.37884 * 119.99904 * 60.00708 * 4 2 1 7 7 N 1.31512 * 120.00005 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99969 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47119 * 59.99750 * 8 6 4 10 10 H 1.48496 * 109.47110 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47002 * 300.00018 * 8 6 4 12 12 O 1.45198 * 109.46827 * 120.00115 * 2 1 3 13 13 C 1.34756 * 116.99892 * 270.00159 * 12 2 1 14 14 O 1.21510 * 120.00302 * 359.97438 * 13 12 2 15 15 C 1.47397 * 119.99866 * 180.02562 * 13 12 2 16 16 C 1.39592 * 120.06181 * 359.97287 * 15 13 12 17 17 C 1.37760 * 120.18189 * 180.02562 * 16 15 13 18 18 C 1.38660 * 119.98193 * 0.19389 * 17 16 15 19 19 C 1.37658 * 120.33533 * 359.97438 * 18 17 16 20 20 C 1.38873 * 120.87320 * 359.59840 * 19 18 17 21 21 O 1.35844 * 111.31338 * 180.65986 * 20 19 18 22 22 C 1.43767 * 109.27154 * 340.94872 * 21 20 19 23 23 C 1.51675 * 132.13567 * 179.01098 * 19 18 17 24 24 C 1.53006 * 110.94545 * 314.01678 * 23 19 18 25 25 C 1.52999 * 110.94692 * 77.71853 * 23 19 18 26 26 H 1.08994 * 109.47085 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.46787 * 300.00579 * 1 2 3 28 28 H 1.09004 * 109.46641 * 59.99736 * 1 2 3 29 29 H 0.96992 * 120.00058 * 180.02562 * 7 6 4 30 30 H 1.08004 * 119.90720 * 0.06371 * 16 15 13 31 31 H 1.08003 * 120.01068 * 180.17625 * 17 16 15 32 32 H 1.08008 * 119.83311 * 180.02562 * 18 17 16 33 33 H 1.08997 * 110.75540 * 146.06902 * 22 21 20 34 34 H 1.09002 * 110.75290 * 269.42697 * 22 21 20 35 35 H 1.09004 * 109.46480 * 60.00340 * 24 23 19 36 36 H 1.08997 * 109.46968 * 180.02562 * 24 23 19 37 37 H 1.08994 * 109.47436 * 300.00660 * 24 23 19 38 38 H 1.09006 * 109.46958 * 60.00225 * 25 23 19 39 39 H 1.09004 * 109.46957 * 179.97438 * 25 23 19 40 40 H 1.08998 * 109.47014 * 300.00441 * 25 23 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9430 0.8297 -2.6034 8 14 2.3226 -1.1196 -4.0079 9 1 1.8280 -2.5199 -4.0081 10 1 1.8271 -0.4199 -5.2204 11 1 3.8076 -1.1191 -4.0076 12 8 2.0140 -0.6845 1.1855 13 6 2.2178 0.0669 2.2854 14 8 1.9977 1.2615 2.2545 15 6 2.7089 -0.5601 3.5257 16 6 2.9628 -1.9323 3.5625 17 6 3.4213 -2.5210 4.7205 18 6 3.6280 -1.7505 5.8546 19 6 3.3778 -0.3970 5.8308 20 6 2.9234 0.2234 4.6745 21 8 2.7552 1.5580 4.8637 22 6 2.6663 1.8300 6.2726 23 6 3.4883 0.6771 6.8959 24 6 2.8634 0.2090 8.2118 25 6 4.9458 1.0942 7.1029 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.7084 1.1609 -3.4844 30 1 2.7998 -2.5339 2.6805 31 1 3.6195 -3.5824 4.7451 32 1 3.9880 -2.2145 6.7611 33 1 3.1141 2.7953 6.5087 34 1 1.6301 1.7912 6.6088 35 1 3.3798 -0.6850 8.5614 36 1 2.9555 0.9977 8.9585 37 1 1.8095 -0.0190 8.0527 38 1 5.3479 1.4854 6.1683 39 1 4.9973 1.8657 7.8713 40 1 5.5303 0.2292 7.4161 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789426303.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:37 Heat of formation + Delta-G solvation = -119.080183 kcal Electronic energy + Delta-G solvation = -23144.658496 eV Core-core repulsion = 19695.931648 eV Total energy + Delta-G solvation = -3448.726848 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.58737 -41.06902 -38.45408 -37.55822 -36.10542 -35.34275 -32.29463 -31.28060 -30.86565 -28.24740 -27.50308 -27.46627 -25.75901 -23.79988 -23.02297 -22.03071 -20.48170 -18.85144 -18.56655 -18.14700 -17.69226 -17.16624 -17.09817 -16.67839 -16.34868 -15.96180 -15.17474 -14.86975 -14.63627 -14.57518 -14.23242 -14.03959 -13.83422 -13.67447 -13.29090 -13.20851 -13.01821 -12.87513 -12.83060 -12.72497 -12.41763 -12.36644 -12.17638 -11.97407 -11.88397 -11.66518 -11.60735 -11.32025 -11.02973 -10.62313 -10.05534 -9.27429 -8.30362 -6.48416 -0.31751 0.25690 1.40347 1.45619 1.53407 1.59052 1.94184 2.21509 2.40383 2.68430 2.99974 3.20055 3.46365 3.77736 3.86682 3.92091 4.11777 4.25529 4.31055 4.38854 4.47239 4.50107 4.55762 4.70940 4.74379 4.79333 4.80095 4.93020 4.96799 5.04829 5.07241 5.19618 5.24015 5.32141 5.36459 5.39035 5.44748 5.57074 5.62064 5.86178 6.01908 6.07694 6.56785 6.92030 7.23258 8.77860 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.030233 B = 0.003735 C = 0.003530 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 925.915867 B = 7495.150502 C = 7930.112520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.217 3.783 3 H 0.001 0.999 4 C -0.550 4.550 5 H 0.071 0.929 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.989 3.011 9 H -0.260 1.260 10 H -0.276 1.276 11 H -0.268 1.268 12 O -0.356 6.356 13 C 0.485 3.515 14 O -0.550 6.550 15 C -0.178 4.178 16 C -0.038 4.038 17 C -0.147 4.147 18 C -0.021 4.021 19 C -0.178 4.178 20 C 0.143 3.857 21 O -0.318 6.318 22 C 0.037 3.963 23 C -0.043 4.043 24 C -0.129 4.129 25 C -0.132 4.132 26 H 0.049 0.951 27 H 0.017 0.983 28 H 0.083 0.917 29 H 0.272 0.728 30 H 0.144 0.856 31 H 0.176 0.824 32 H 0.175 0.825 33 H 0.125 0.875 34 H 0.086 0.914 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.054 0.946 38 H 0.036 0.964 39 H 0.086 0.914 40 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.666 -6.340 24.052 25.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.164 3.836 3 H 0.019 0.981 4 C -0.587 4.587 5 H 0.089 0.911 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.811 3.189 9 H -0.185 1.185 10 H -0.201 1.201 11 H -0.193 1.193 12 O -0.272 6.272 13 C 0.333 3.667 14 O -0.443 6.443 15 C -0.180 4.180 16 C -0.056 4.056 17 C -0.165 4.165 18 C -0.039 4.039 19 C -0.179 4.179 20 C 0.096 3.904 21 O -0.231 6.231 22 C -0.037 4.037 23 C -0.043 4.043 24 C -0.186 4.186 25 C -0.189 4.189 26 H 0.068 0.932 27 H 0.036 0.964 28 H 0.102 0.898 29 H 0.081 0.919 30 H 0.161 0.839 31 H 0.194 0.806 32 H 0.193 0.807 33 H 0.143 0.857 34 H 0.104 0.896 35 H 0.101 0.899 36 H 0.101 0.899 37 H 0.074 0.926 38 H 0.055 0.945 39 H 0.105 0.895 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.469 -5.665 23.711 25.222 hybrid contribution -0.221 0.580 -1.403 1.535 sum 6.247 -5.085 22.307 23.717 Atomic orbital electron populations 1.21976 0.96719 1.00501 1.00592 1.20373 0.92097 0.91974 0.79139 0.98119 1.21263 1.33677 1.14054 0.89711 0.91121 1.25920 0.94618 0.95663 1.02307 1.70026 1.36532 1.23738 1.25378 0.85156 0.78751 0.78678 0.76339 1.18456 1.20127 1.19289 1.86510 1.76566 1.43052 1.21092 1.21842 0.74443 0.85176 0.85271 1.90764 1.50559 1.17788 1.85233 1.18764 1.14228 0.95162 0.89827 1.21458 0.93100 0.90601 1.00485 1.21453 1.01736 1.02293 0.91001 1.21015 0.92951 0.90244 0.99693 1.21084 1.06007 0.96502 0.94271 1.19804 0.92583 0.83847 0.94137 1.86965 1.87184 1.20148 1.28845 1.24500 1.01762 1.01092 0.76337 1.20882 0.97962 0.90502 0.95003 1.21772 1.00410 1.03050 0.93402 1.21808 0.92391 1.02953 1.01791 0.93194 0.96419 0.89824 0.91908 0.83856 0.80616 0.80717 0.85685 0.89596 0.89878 0.89901 0.92648 0.94514 0.89477 0.90174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -7.81 9.33 71.98 0.67 -7.14 16 2 C 0.22 12.98 2.56 29.85 0.08 13.06 16 3 H 0.00 0.07 7.16 -2.39 -0.02 0.05 16 4 C -0.55 -32.77 8.90 25.60 0.23 -32.54 16 5 H 0.07 4.07 7.81 -2.91 -0.02 4.04 16 6 C 0.01 0.83 5.30 84.66 0.45 1.28 16 7 N -0.92 -54.98 11.32 21.45 0.24 -54.74 16 8 Si 0.99 44.05 29.54 68.60 2.03 46.08 16 9 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 10 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 12 O -0.36 -19.11 9.09 -56.66 -0.52 -19.62 16 13 C 0.49 24.73 7.86 70.23 0.55 25.28 16 14 O -0.55 -31.83 15.12 25.18 0.38 -31.45 16 15 C -0.18 -6.98 5.89 -19.94 -0.12 -7.10 16 16 C -0.04 -1.15 9.59 22.48 0.22 -0.93 16 17 C -0.15 -2.88 10.05 22.26 0.22 -2.65 16 18 C -0.02 -0.37 9.91 22.23 0.22 -0.15 16 19 C -0.18 -4.13 5.05 -19.54 -0.10 -4.23 16 20 C 0.14 4.98 6.73 23.02 0.15 5.13 16 21 O -0.32 -11.66 10.13 -76.88 -0.78 -12.44 16 22 C 0.04 0.84 7.10 72.57 0.51 1.35 16 23 C -0.04 -0.74 1.03 -52.03 -0.05 -0.79 16 24 C -0.13 -1.31 8.56 71.98 0.62 -0.70 16 25 C -0.13 -1.87 8.61 71.98 0.62 -1.25 16 26 H 0.05 2.58 8.14 -2.39 -0.02 2.56 16 27 H 0.02 0.91 8.14 -2.39 -0.02 0.90 16 28 H 0.08 4.91 6.07 -2.38 -0.01 4.89 16 29 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 30 H 0.14 4.33 7.59 -2.91 -0.02 4.31 16 31 H 0.18 2.01 8.06 -2.91 -0.02 1.98 16 32 H 0.18 1.39 8.06 -2.91 -0.02 1.36 16 33 H 0.13 2.22 7.92 -2.39 -0.02 2.20 16 34 H 0.09 1.74 7.86 -2.39 -0.02 1.72 16 35 H 0.08 0.56 8.14 -2.38 -0.02 0.54 16 36 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 37 H 0.05 0.66 8.07 -2.39 -0.02 0.64 16 38 H 0.04 0.71 8.14 -2.38 -0.02 0.69 16 39 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 40 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 Total: -1.00 -80.08 336.88 6.66 -73.42 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 1.03 Total: 10.14 kcal Atomic # 6 Polarization: -15.65 SS G_CDS: 4.27 Total: -11.38 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.24 Total: -54.74 kcal Atomic # 8 Polarization: -62.60 SS G_CDS: -0.91 Total: -63.52 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -80.08 6.66 -73.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789426303.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.662 kcal (2) G-P(sol) polarization free energy of solvation -80.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds