Wall clock time and date at job start Tue Mar 31 2020 06:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00386 * 2 1 4 4 H 1.48497 * 109.47043 * 269.99766 * 3 2 1 5 5 H 1.48501 * 109.47105 * 29.99895 * 3 2 1 6 6 H 1.48497 * 109.47238 * 149.99357 * 3 2 1 7 7 C 1.37882 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99396 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00134 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.46958 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99963 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99939 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99798 * 180.02562 * 11 10 9 14 14 N 1.46904 * 109.46634 * 185.92703 * 13 11 10 15 15 C 1.47051 * 110.99803 * 188.65845 * 14 13 11 16 16 C 1.51740 * 110.81419 * 149.93420 * 15 14 13 17 17 O 1.41857 * 113.64165 * 66.14756 * 16 15 14 18 18 C 1.43023 * 115.28172 * 292.58248 * 17 16 15 19 19 C 1.51421 * 108.43860 * 83.87025 * 18 17 16 20 20 C 1.38023 * 120.11940 * 111.88693 * 19 18 17 21 21 C 1.38388 * 119.69518 * 179.07159 * 20 19 18 22 22 C 1.38307 * 120.18845 * 0.06014 * 21 20 19 23 23 C 1.38166 * 120.19592 * 0.15207 * 22 21 20 24 24 C 1.38246 * 119.56025 * 291.37606 * 19 18 17 25 25 H 0.96996 * 119.99379 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47027 * 59.99754 * 9 7 2 27 27 H 1.08997 * 109.46924 * 299.99898 * 9 7 2 28 28 H 0.97004 * 120.00270 * 0.02562 * 10 9 7 29 29 H 1.08998 * 109.47272 * 65.92760 * 13 11 10 30 30 H 1.08996 * 109.47329 * 305.92343 * 13 11 10 31 31 H 1.09000 * 109.20951 * 270.27400 * 15 14 13 32 32 H 1.09001 * 109.20758 * 29.58478 * 15 14 13 33 33 H 1.09001 * 108.64976 * 187.22855 * 16 15 14 34 34 H 1.09002 * 108.64422 * 305.06979 * 16 15 14 35 35 H 1.08998 * 109.64523 * 324.18835 * 18 17 16 36 36 H 1.09002 * 109.64394 * 203.55121 * 18 17 16 37 37 H 1.07993 * 120.14686 * 359.07427 * 20 19 18 38 38 H 1.08000 * 119.90310 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.89904 * 180.17238 * 22 21 20 40 40 H 1.07999 * 120.19719 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 7 3.9998 -2.5754 0.0022 11 6 5.3249 -2.8217 0.0024 12 8 6.1130 -1.8999 0.0021 13 6 5.8271 -4.2426 0.0030 14 7 7.2891 -4.2450 0.1460 15 6 7.8360 -5.5953 -0.0544 16 6 9.2381 -5.5291 -0.6307 17 8 10.1903 -4.9600 0.2535 18 6 10.0112 -3.5683 0.5305 19 6 8.9931 -3.4284 1.6425 20 6 9.3820 -2.9664 2.8836 21 6 8.4407 -2.8237 3.8879 22 6 7.1163 -3.1436 3.6503 23 6 6.7259 -3.6105 2.4099 24 6 7.6717 -3.7564 1.4026 25 1 -0.4849 0.8401 -0.0004 26 1 3.8745 -0.6801 0.8911 27 1 3.8752 -0.6806 -0.8888 28 1 3.3694 -3.3127 0.0021 29 1 5.5530 -4.7252 -0.9351 30 1 5.3797 -4.7858 0.8353 31 1 7.8659 -6.1158 0.9028 32 1 7.1917 -6.1449 -0.7406 33 1 9.5586 -6.5395 -0.8848 34 1 9.2117 -4.9350 -1.5442 35 1 9.6494 -3.0603 -0.3635 36 1 10.9594 -3.1323 0.8449 37 1 10.4162 -2.7173 3.0699 38 1 8.7413 -2.4620 4.8601 39 1 6.3851 -3.0279 4.4367 40 1 5.6916 -3.8599 2.2242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791575806.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:51 Heat of formation + Delta-G solvation = -31.032443 kcal Electronic energy + Delta-G solvation = -23429.631947 eV Core-core repulsion = 20017.015886 eV Total energy + Delta-G solvation = -3412.616061 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.87129 -38.78464 -37.66648 -36.28678 -34.26202 -32.39281 -31.94709 -30.84806 -29.71376 -27.96522 -26.21215 -25.91086 -22.90312 -22.14636 -21.40225 -20.74458 -19.84975 -17.77415 -17.27521 -16.74831 -16.29552 -15.89375 -15.61698 -15.16315 -15.03163 -14.85995 -14.55258 -14.23132 -14.02348 -13.73873 -13.35270 -12.85577 -12.75838 -12.47638 -12.35104 -12.14794 -11.74474 -11.71172 -11.55913 -11.11459 -11.02964 -10.98361 -10.77872 -9.99204 -9.84232 -9.52405 -9.45390 -9.21771 -8.80181 -8.75058 -8.18169 -7.92289 -6.24006 -4.26323 1.40947 1.45272 3.18944 3.25209 3.28954 3.33748 3.41002 3.63783 4.00294 4.08609 4.31621 4.70939 4.77301 4.83656 4.94302 4.99703 5.06662 5.11454 5.14746 5.24662 5.27496 5.38535 5.46257 5.48985 5.53699 5.63465 5.70985 5.79339 6.03311 6.26972 6.46509 6.59288 6.73079 6.77781 6.88447 7.05185 7.10438 7.20075 7.27132 7.36689 8.10976 8.47915 8.72666 8.91434 9.36346 10.87916 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022105 B = 0.004218 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.363630 B = 6635.899820 C = 7136.145753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.078 3.922 3 Si 0.876 3.124 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.544 4.544 8 H 0.079 0.921 9 C 0.224 3.776 10 N -0.708 5.708 11 C 0.498 3.502 12 O -0.531 6.531 13 C 0.027 3.973 14 N -0.475 5.475 15 C 0.021 3.979 16 C 0.067 3.933 17 O -0.378 6.378 18 C 0.111 3.889 19 C -0.127 4.127 20 C -0.089 4.089 21 C -0.144 4.144 22 C -0.093 4.093 23 C -0.161 4.161 24 C 0.134 3.866 25 H 0.268 0.732 26 H 0.024 0.976 27 H 0.020 0.980 28 H 0.395 0.605 29 H 0.108 0.892 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.097 0.903 34 H 0.057 0.943 35 H 0.074 0.926 36 H 0.095 0.905 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.573 -12.391 2.884 21.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.125 4.125 3 Si 0.702 3.298 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.185 1.185 7 C -0.582 4.582 8 H 0.097 0.903 9 C 0.102 3.898 10 N -0.358 5.358 11 C 0.282 3.718 12 O -0.407 6.407 13 C -0.104 4.104 14 N -0.192 5.192 15 C -0.105 4.105 16 C -0.011 4.011 17 O -0.296 6.296 18 C 0.035 3.965 19 C -0.129 4.129 20 C -0.107 4.107 21 C -0.163 4.163 22 C -0.112 4.112 23 C -0.182 4.182 24 C 0.038 3.962 25 H 0.078 0.922 26 H 0.042 0.958 27 H 0.038 0.962 28 H 0.228 0.772 29 H 0.126 0.874 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.115 0.885 34 H 0.075 0.925 35 H 0.092 0.908 36 H 0.113 0.887 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 18.289 -11.412 2.514 21.703 hybrid contribution -0.908 0.357 0.436 1.069 sum 17.381 -11.055 2.951 20.809 Atomic orbital electron populations 1.69879 1.06207 1.27443 1.49415 1.24786 0.94775 0.99150 0.93827 0.86827 0.80587 0.83267 0.79087 1.19825 1.20869 1.18533 1.21085 0.88504 0.95199 1.53377 0.90270 1.19458 0.95155 0.78512 0.96720 1.46148 1.05417 1.11065 1.73150 1.20178 0.83286 0.90310 0.78049 1.90686 1.55276 1.45572 1.49209 1.22271 0.87530 0.96947 1.03616 1.59334 1.10109 1.22013 1.27737 1.22683 0.97865 0.87909 1.02063 1.22147 0.87482 0.99170 0.92276 1.87687 1.50652 1.24272 1.66994 1.21631 0.96896 0.82192 0.95824 1.19997 0.93745 1.02747 0.96386 1.20861 0.99288 0.98468 0.92102 1.21054 0.93301 1.02618 0.99300 1.21004 0.96088 0.97489 0.96603 1.21392 0.99622 1.03851 0.93301 1.18514 0.93137 0.97363 0.87198 0.92244 0.95804 0.96229 0.77172 0.87354 0.91086 0.92528 0.89071 0.88533 0.92517 0.90807 0.88737 0.85860 0.86212 0.86118 0.85895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.39 13.96 55.43 0.77 -25.61 16 2 C 0.08 2.21 5.47 -17.82 -0.10 2.12 16 3 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 5 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.26 -6.43 6.54 56.52 0.37 -6.06 16 7 C -0.54 -14.81 9.83 -34.44 -0.34 -15.15 16 8 H 0.08 2.23 7.84 -52.48 -0.41 1.82 16 9 C 0.22 5.49 4.50 -5.20 -0.02 5.46 16 10 N -0.71 -14.01 5.55 -61.47 -0.34 -14.35 16 11 C 0.50 9.35 6.26 -10.98 -0.07 9.28 16 12 O -0.53 -12.20 15.37 5.56 0.09 -12.11 16 13 C 0.03 0.36 4.90 -4.97 -0.02 0.34 16 14 N -0.48 -6.61 3.98 -173.15 -0.69 -7.30 16 15 C 0.02 0.21 5.51 -4.38 -0.02 0.19 16 16 C 0.07 0.67 6.44 36.52 0.24 0.90 16 17 O -0.38 -4.62 10.48 -35.22 -0.37 -4.99 16 18 C 0.11 1.38 6.35 36.36 0.23 1.61 16 19 C -0.13 -1.81 5.45 -104.34 -0.57 -2.38 16 20 C -0.09 -1.14 9.69 -39.60 -0.38 -1.52 16 21 C -0.14 -1.84 10.04 -39.50 -0.40 -2.24 16 22 C -0.09 -1.31 10.04 -39.58 -0.40 -1.70 16 23 C -0.16 -2.47 8.10 -39.35 -0.32 -2.79 16 24 C 0.13 2.05 3.92 -83.79 -0.33 1.72 16 25 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 26 H 0.02 0.63 7.20 -51.93 -0.37 0.25 16 27 H 0.02 0.51 7.57 -51.93 -0.39 0.12 16 28 H 0.39 6.76 8.32 -40.82 -0.34 6.42 16 29 H 0.11 1.17 7.82 -51.93 -0.41 0.76 16 30 H 0.07 0.82 6.35 -51.93 -0.33 0.50 16 31 H 0.06 0.60 7.77 -51.93 -0.40 0.20 16 32 H 0.09 0.70 7.56 -51.93 -0.39 0.31 16 33 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.57 7.96 -51.93 -0.41 0.16 16 35 H 0.07 1.00 7.81 -51.93 -0.41 0.59 16 36 H 0.09 0.97 7.93 -51.93 -0.41 0.55 16 37 H 0.12 1.24 7.98 -52.49 -0.42 0.82 16 38 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 39 H 0.12 1.47 8.06 -52.49 -0.42 1.04 16 40 H 0.12 1.84 5.34 -52.49 -0.28 1.55 16 LS Contribution 324.09 15.07 4.88 4.88 Total: -1.00 -33.97 324.09 -8.24 -42.21 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -5.42 Total: 4.55 kcal Atomic # 6 Polarization: -1.66 SS G_CDS: -2.50 Total: -4.16 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: -0.26 Total: -47.26 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.28 Total: -17.10 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.97 -8.24 -42.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791575806.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.182 kcal (2) G-P(sol) polarization free energy of solvation -33.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds