Wall clock time and date at job start Tue Mar 31 2020 06:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00386 * 2 1 4 4 H 1.48497 * 109.47043 * 269.99766 * 3 2 1 5 5 H 1.48501 * 109.47105 * 29.99895 * 3 2 1 6 6 H 1.48497 * 109.47238 * 149.99357 * 3 2 1 7 7 C 1.37882 * 119.99925 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99396 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00134 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.46958 * 179.97438 * 9 7 2 11 11 C 1.34781 * 119.99963 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99939 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99798 * 180.02562 * 11 10 9 14 14 N 1.46904 * 109.46634 * 185.92703 * 13 11 10 15 15 C 1.47051 * 110.99803 * 188.65845 * 14 13 11 16 16 C 1.51740 * 110.81419 * 149.93420 * 15 14 13 17 17 O 1.41857 * 113.64165 * 66.14756 * 16 15 14 18 18 C 1.43023 * 115.28172 * 292.58248 * 17 16 15 19 19 C 1.51421 * 108.43860 * 83.87025 * 18 17 16 20 20 C 1.38023 * 120.11940 * 111.88693 * 19 18 17 21 21 C 1.38388 * 119.69518 * 179.07159 * 20 19 18 22 22 C 1.38307 * 120.18845 * 0.06014 * 21 20 19 23 23 C 1.38166 * 120.19592 * 0.15207 * 22 21 20 24 24 C 1.38246 * 119.56025 * 291.37606 * 19 18 17 25 25 H 0.96996 * 119.99379 * 0.02562 * 1 2 3 26 26 H 1.09003 * 109.47027 * 59.99754 * 9 7 2 27 27 H 1.08997 * 109.46924 * 299.99898 * 9 7 2 28 28 H 0.97004 * 120.00270 * 0.02562 * 10 9 7 29 29 H 1.08998 * 109.47272 * 65.92760 * 13 11 10 30 30 H 1.08996 * 109.47329 * 305.92343 * 13 11 10 31 31 H 1.09000 * 109.20951 * 270.27400 * 15 14 13 32 32 H 1.09001 * 109.20758 * 29.58478 * 15 14 13 33 33 H 1.09001 * 108.64976 * 187.22855 * 16 15 14 34 34 H 1.09002 * 108.64422 * 305.06979 * 16 15 14 35 35 H 1.08998 * 109.64523 * 324.18835 * 18 17 16 36 36 H 1.09002 * 109.64394 * 203.55121 * 18 17 16 37 37 H 1.07993 * 120.14686 * 359.07427 * 20 19 18 38 38 H 1.08000 * 119.90310 * 180.02562 * 21 20 19 39 39 H 1.08000 * 119.89904 * 180.17238 * 22 21 20 40 40 H 1.07999 * 120.19719 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4968 2.0463 -1.4001 5 1 1.4468 2.6526 0.7000 6 1 3.5467 1.4401 0.7002 7 6 2.0046 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5115 -1.1942 0.0011 10 7 3.9998 -2.5754 0.0022 11 6 5.3249 -2.8217 0.0024 12 8 6.1130 -1.8999 0.0021 13 6 5.8271 -4.2426 0.0030 14 7 7.2891 -4.2450 0.1460 15 6 7.8360 -5.5953 -0.0544 16 6 9.2381 -5.5291 -0.6307 17 8 10.1903 -4.9600 0.2535 18 6 10.0112 -3.5683 0.5305 19 6 8.9931 -3.4284 1.6425 20 6 9.3820 -2.9664 2.8836 21 6 8.4407 -2.8237 3.8879 22 6 7.1163 -3.1436 3.6503 23 6 6.7259 -3.6105 2.4099 24 6 7.6717 -3.7564 1.4026 25 1 -0.4849 0.8401 -0.0004 26 1 3.8745 -0.6801 0.8911 27 1 3.8752 -0.6806 -0.8888 28 1 3.3694 -3.3127 0.0021 29 1 5.5530 -4.7252 -0.9351 30 1 5.3797 -4.7858 0.8353 31 1 7.8659 -6.1158 0.9028 32 1 7.1917 -6.1449 -0.7406 33 1 9.5586 -6.5395 -0.8848 34 1 9.2117 -4.9350 -1.5442 35 1 9.6494 -3.0603 -0.3635 36 1 10.9594 -3.1323 0.8449 37 1 10.4162 -2.7173 3.0699 38 1 8.7413 -2.4620 4.8601 39 1 6.3851 -3.0279 4.4367 40 1 5.6916 -3.8599 2.2242 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791575806.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:51 Heat of formation + Delta-G solvation = -56.167519 kcal Electronic energy + Delta-G solvation = -23430.721885 eV Core-core repulsion = 20017.015886 eV Total energy + Delta-G solvation = -3413.705999 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.142 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.92505 -40.20675 -38.58429 -37.36350 -36.08994 -34.42523 -32.91288 -31.80205 -31.03036 -29.56759 -27.19522 -27.08579 -24.24165 -23.59017 -22.44242 -21.88727 -21.31702 -19.25460 -18.61445 -17.83824 -17.71825 -17.03420 -16.90697 -16.49828 -16.34343 -15.91315 -15.76680 -15.57991 -15.28414 -14.98038 -14.78495 -14.40677 -14.15404 -13.96839 -13.66408 -13.10425 -13.06577 -13.01487 -12.70228 -12.60527 -12.50305 -12.03931 -11.97105 -11.84363 -11.67517 -10.94135 -10.87066 -10.69436 -10.40646 -9.94290 -9.78351 -8.94424 -8.42391 -6.48899 0.37928 0.43521 1.29429 1.32166 1.44470 1.72472 2.14513 2.25585 2.65991 2.83158 2.93178 3.12322 3.75833 3.81572 3.87434 3.91261 4.07579 4.14501 4.24304 4.26605 4.32821 4.44091 4.52724 4.62181 4.66363 4.70148 4.77061 4.85901 4.91781 5.00346 5.05174 5.23742 5.30449 5.48121 5.50426 5.58130 5.77749 5.86330 6.08086 6.22045 6.29215 6.52098 6.83783 7.14352 7.41826 8.72308 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.022105 B = 0.004218 C = 0.003923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.363630 B = 6635.899820 C = 7136.145753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.029 3.971 3 Si 0.934 3.066 4 H -0.265 1.265 5 H -0.272 1.272 6 H -0.265 1.265 7 C -0.545 4.545 8 H 0.062 0.938 9 C 0.237 3.763 10 N -0.707 5.707 11 C 0.499 3.501 12 O -0.575 6.575 13 C 0.037 3.963 14 N -0.490 5.490 15 C 0.021 3.979 16 C 0.061 3.939 17 O -0.388 6.388 18 C 0.115 3.885 19 C -0.148 4.148 20 C -0.091 4.091 21 C -0.149 4.149 22 C -0.109 4.109 23 C -0.188 4.188 24 C 0.119 3.881 25 H 0.273 0.727 26 H 0.007 0.993 27 H 0.008 0.992 28 H 0.409 0.591 29 H 0.143 0.857 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.122 0.878 33 H 0.127 0.873 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.114 0.886 37 H 0.151 0.849 38 H 0.146 0.854 39 H 0.132 0.868 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.150 -13.299 2.844 23.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.171 4.171 3 Si 0.758 3.242 4 H -0.190 1.190 5 H -0.197 1.197 6 H -0.190 1.190 7 C -0.583 4.583 8 H 0.080 0.920 9 C 0.113 3.887 10 N -0.358 5.358 11 C 0.286 3.714 12 O -0.454 6.454 13 C -0.093 4.093 14 N -0.207 5.207 15 C -0.103 4.103 16 C -0.016 4.016 17 O -0.306 6.306 18 C 0.039 3.961 19 C -0.151 4.151 20 C -0.110 4.110 21 C -0.168 4.168 22 C -0.127 4.127 23 C -0.208 4.208 24 C 0.022 3.978 25 H 0.082 0.918 26 H 0.025 0.975 27 H 0.026 0.974 28 H 0.244 0.756 29 H 0.160 0.840 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.140 0.860 33 H 0.145 0.855 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.132 0.868 37 H 0.169 0.831 38 H 0.164 0.836 39 H 0.149 0.851 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 19.863 -12.367 2.467 23.528 hybrid contribution -1.392 0.569 0.454 1.571 sum 18.471 -11.798 2.921 22.111 Atomic orbital electron populations 1.69972 1.07576 1.28581 1.50695 1.25544 0.95482 1.02453 0.93629 0.85909 0.79138 0.79708 0.79430 1.18982 1.19689 1.18973 1.21284 0.89851 0.94619 1.52538 0.92010 1.19006 0.93323 0.81079 0.95257 1.45973 1.06578 1.09621 1.73599 1.21057 0.82095 0.92297 0.75995 1.90662 1.56165 1.47643 1.50908 1.22253 0.87814 0.93020 1.06250 1.59377 1.10049 1.24047 1.27221 1.22816 0.98529 0.86266 1.02725 1.22380 0.87107 1.00541 0.91613 1.87668 1.51454 1.23983 1.67500 1.21617 0.97320 0.82496 0.94658 1.20375 0.93995 1.03140 0.97551 1.21262 1.00743 0.97399 0.91582 1.21397 0.92788 1.02060 1.00547 1.21292 0.97210 0.97579 0.96648 1.21523 0.99645 1.05412 0.94255 1.18774 0.93632 0.97677 0.87689 0.91823 0.97535 0.97416 0.75567 0.83957 0.88906 0.92864 0.85967 0.85545 0.92804 0.92463 0.86766 0.83132 0.83632 0.85057 0.86364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.35 13.96 21.45 0.30 -55.05 16 2 C 0.03 1.67 5.47 84.66 0.46 2.13 16 3 Si 0.93 44.54 27.47 68.60 1.88 46.43 16 4 H -0.26 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 6 H -0.27 -12.74 6.54 99.48 0.65 -12.09 16 7 C -0.55 -29.98 9.83 25.60 0.25 -29.73 16 8 H 0.06 3.54 7.84 -2.91 -0.02 3.51 16 9 C 0.24 11.71 4.50 85.63 0.38 12.09 16 10 N -0.71 -27.73 5.55 -466.79 -2.59 -30.32 16 11 C 0.50 18.41 6.26 87.66 0.55 18.96 16 12 O -0.57 -26.52 15.37 -3.03 -0.05 -26.57 16 13 C 0.04 0.91 4.90 85.56 0.42 1.33 16 14 N -0.49 -12.85 3.98 -701.73 -2.79 -15.64 16 15 C 0.02 0.39 5.51 85.86 0.47 0.86 16 16 C 0.06 1.06 6.44 71.57 0.46 1.52 16 17 O -0.39 -8.79 10.48 -148.94 -1.56 -10.35 16 18 C 0.12 2.75 6.35 71.47 0.45 3.20 16 19 C -0.15 -4.10 5.45 -19.68 -0.11 -4.21 16 20 C -0.09 -2.21 9.69 22.25 0.22 -1.99 16 21 C -0.15 -3.62 10.04 22.32 0.22 -3.39 16 22 C -0.11 -3.00 10.04 22.27 0.22 -2.77 16 23 C -0.19 -5.71 8.10 22.42 0.18 -5.53 16 24 C 0.12 3.54 3.92 37.98 0.15 3.69 16 25 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 26 H 0.01 0.36 7.20 -2.39 -0.02 0.34 16 27 H 0.01 0.41 7.57 -2.39 -0.02 0.39 16 28 H 0.41 13.69 8.32 -92.71 -0.77 12.91 16 29 H 0.14 2.58 7.82 -2.39 -0.02 2.56 16 30 H 0.09 1.95 6.35 -2.39 -0.02 1.94 16 31 H 0.05 1.02 7.77 -2.39 -0.02 1.00 16 32 H 0.12 1.41 7.56 -2.39 -0.02 1.39 16 33 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.05 0.98 7.96 -2.39 -0.02 0.96 16 35 H 0.06 1.53 7.81 -2.39 -0.02 1.51 16 36 H 0.11 2.15 7.93 -2.39 -0.02 2.13 16 37 H 0.15 2.65 7.98 -2.91 -0.02 2.63 16 38 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 39 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 40 H 0.12 3.52 5.34 -2.91 -0.02 3.50 16 Total: -1.00 -74.11 324.09 -0.23 -74.34 By element: Atomic # 1 Polarization: 20.76 SS G_CDS: 0.23 Total: 20.99 kcal Atomic # 6 Polarization: -8.18 SS G_CDS: 4.34 Total: -3.83 kcal Atomic # 7 Polarization: -95.93 SS G_CDS: -5.08 Total: -101.01 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -1.61 Total: -36.91 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 1.88 Total: 46.43 kcal Total: -74.11 -0.23 -74.34 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791575806.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.173 kcal (2) G-P(sol) polarization free energy of solvation -74.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds