Wall clock time and date at job start Tue Mar 31 2020 06:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.99030 * 2 1 4 4 O 1.43750 * 109.87887 * 238.92597 * 2 1 3 5 5 C 1.44386 * 106.97014 * 267.08612 * 4 2 1 6 6 C 1.55221 * 103.56593 * 320.00738 * 5 4 2 7 7 C 1.54100 * 109.88371 * 121.08946 * 2 1 3 8 8 H 1.09002 * 110.48486 * 358.58826 * 7 2 1 9 9 C 1.52992 * 110.48808 * 236.07505 * 7 2 1 10 10 O 1.45196 * 109.47097 * 176.84409 * 9 7 2 11 11 C 1.34712 * 117.00320 * 179.97438 * 10 9 7 12 12 O 1.21466 * 119.99531 * 0.02562 * 11 10 9 13 13 C 1.47767 * 120.00063 * 179.97438 * 11 10 9 14 14 C 1.39965 * 120.03115 * 0.02562 * 13 11 10 15 15 C 1.38320 * 120.35040 * 179.97438 * 14 13 11 16 16 C 1.37758 * 120.41834 * 0.02562 * 15 14 13 17 17 C 1.40753 * 120.05287 * 359.97438 * 16 15 14 18 18 C 1.41431 * 120.17561 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99925 * 154.98216 * 18 17 16 20 20 C 1.39943 * 120.00021 * 334.98121 * 18 17 16 21 21 N 1.30825 * 119.99923 * 342.52994 * 20 18 17 22 22 Si 1.86803 * 119.99890 * 162.53306 * 20 18 17 23 23 H 1.48495 * 109.47352 * 84.99290 * 22 20 18 24 24 H 1.48499 * 109.47161 * 324.99160 * 22 20 18 25 25 H 1.48505 * 109.46749 * 204.99243 * 22 20 18 26 26 C 1.39049 * 120.02782 * 180.25538 * 13 11 10 27 27 H 1.08998 * 109.47246 * 298.90426 * 1 2 3 28 28 H 1.09001 * 109.47251 * 58.91566 * 1 2 3 29 29 H 1.09009 * 109.46596 * 178.91189 * 1 2 3 30 30 H 1.08996 * 110.61797 * 78.44208 * 5 4 2 31 31 H 1.09006 * 110.61208 * 201.44125 * 5 4 2 32 32 H 1.08997 * 110.89853 * 278.74904 * 6 5 4 33 33 H 1.09000 * 111.02159 * 155.07075 * 6 5 4 34 34 H 1.08997 * 109.47860 * 56.84222 * 9 7 2 35 35 H 1.09006 * 109.47252 * 296.83691 * 9 7 2 36 36 H 1.08001 * 119.82641 * 0.02562 * 14 13 11 37 37 H 1.07998 * 119.78462 * 180.02562 * 15 14 13 38 38 H 1.07999 * 119.96873 * 179.97438 * 16 15 14 39 39 H 0.97000 * 119.99646 * 179.97438 * 21 20 18 40 40 H 1.08003 * 120.20606 * 0.02692 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0188 -0.6977 -1.1579 5 6 2.2281 -2.0713 -0.7650 6 6 2.8319 -1.9544 0.6602 7 6 2.0541 -0.7483 1.2410 8 1 1.2239 -1.0913 1.8585 9 6 2.9884 0.1505 2.0533 10 8 3.4095 -0.5487 3.2541 11 6 4.2417 0.1088 4.0847 12 8 4.6052 1.2356 3.8134 13 6 4.7114 -0.5403 5.3263 14 6 4.2926 -1.8385 5.6397 15 6 4.7286 -2.4526 6.7999 16 6 5.5793 -1.7941 7.6603 17 6 6.0114 -0.4881 7.3621 18 6 6.8843 0.1906 8.2440 19 1 7.5256 0.9755 7.8710 20 6 6.9171 -0.1549 9.5997 21 7 5.9337 -0.8401 10.1240 22 14 8.3649 0.3625 10.6606 23 1 8.1420 1.7418 11.1637 24 1 9.6096 0.3258 9.8516 25 1 8.4940 -0.5688 11.8101 26 6 5.5662 0.1398 6.1867 27 1 -0.3633 0.4967 0.8996 28 1 -0.3634 0.5306 -0.8801 29 1 -0.3633 -1.0276 -0.0195 30 1 1.2814 -2.6107 -0.7359 31 1 2.9296 -2.5610 -1.4405 32 1 3.9000 -1.7424 0.6138 33 1 2.6406 -2.8566 1.2411 34 1 2.4633 1.0646 2.3305 35 1 3.8633 0.4017 1.4535 36 1 3.6260 -2.3639 4.9718 37 1 4.3999 -3.4547 7.0325 38 1 5.9149 -2.2803 8.5644 39 1 5.9566 -1.0799 11.0636 40 1 5.8888 1.1433 5.9511 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793444764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:45 Heat of formation + Delta-G solvation = -128.719844 kcal Electronic energy + Delta-G solvation = -22252.102696 eV Core-core repulsion = 18802.957841 eV Total energy + Delta-G solvation = -3449.144855 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.26753 -39.51029 -37.43238 -35.96051 -33.80173 -33.14923 -31.43729 -30.11751 -29.92297 -28.24659 -25.47292 -24.64263 -22.93307 -21.87669 -20.84582 -20.72635 -20.00276 -17.88830 -17.11281 -16.47979 -16.30328 -15.85098 -15.67354 -15.13679 -14.73897 -14.53830 -14.04572 -13.55516 -13.50879 -13.33921 -13.12368 -12.79504 -12.49847 -12.24330 -12.10743 -11.80340 -11.68877 -11.30145 -11.20318 -11.18334 -11.06264 -10.93885 -10.77054 -10.60144 -10.36210 -10.30012 -9.91572 -9.68741 -9.57477 -9.27591 -7.75984 -7.63252 -6.87948 -4.48866 1.89382 2.68334 3.01496 3.03037 3.04837 3.11398 3.54302 3.66971 3.86890 4.32087 4.45868 4.52106 4.59706 4.86853 4.96514 5.03718 5.14453 5.24853 5.31963 5.36479 5.48790 5.53518 5.61936 5.63470 5.73627 5.83432 5.89381 5.99866 6.12050 6.29514 6.65740 6.71439 6.78882 6.87468 6.95265 7.09967 7.24042 7.56885 7.75500 7.85464 8.03694 8.40704 8.44108 8.71888 8.75633 10.07986 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.040110 B = 0.002844 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.906635 B = 9842.078228 C =10119.660076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.079 3.921 3 H 0.096 0.904 4 O -0.372 6.372 5 C 0.044 3.956 6 C -0.147 4.147 7 C -0.119 4.119 8 H 0.097 0.903 9 C 0.075 3.925 10 O -0.353 6.353 11 C 0.513 3.487 12 O -0.524 6.524 13 C -0.107 4.107 14 C -0.183 4.183 15 C -0.118 4.118 16 C -0.132 4.132 17 C 0.096 3.904 18 C -0.460 4.460 19 H 0.081 0.919 20 C 0.076 3.924 21 N -0.795 5.795 22 Si 0.911 3.089 23 H -0.268 1.268 24 H -0.260 1.260 25 H -0.276 1.276 26 C -0.153 4.153 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.093 0.907 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.124 0.876 39 H 0.283 0.717 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.541 -3.181 -13.113 15.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.021 3.979 3 H 0.114 0.886 4 O -0.291 6.291 5 C -0.032 4.032 6 C -0.184 4.184 7 C -0.137 4.137 8 H 0.115 0.885 9 C 0.001 3.999 10 O -0.270 6.270 11 C 0.361 3.639 12 O -0.415 6.415 13 C -0.109 4.109 14 C -0.203 4.203 15 C -0.136 4.136 16 C -0.152 4.152 17 C 0.094 3.906 18 C -0.490 4.490 19 H 0.099 0.901 20 C -0.142 4.142 21 N -0.420 5.420 22 Si 0.735 3.265 23 H -0.193 1.193 24 H -0.184 1.184 25 H -0.201 1.201 26 C -0.173 4.173 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.111 0.889 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.142 0.858 39 H 0.094 0.906 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.505 -2.841 -13.199 15.447 hybrid contribution 0.437 0.256 0.768 0.920 sum -7.068 -2.584 -12.431 14.531 Atomic orbital electron populations 1.22272 0.95032 1.02682 1.02699 1.22683 0.94111 0.97014 0.84079 0.88582 1.88917 1.86072 1.21050 1.33065 1.23634 0.99832 0.84179 0.95591 1.23229 1.00896 0.98541 0.95758 1.22637 0.98758 0.96023 0.96301 0.88481 1.22935 0.97968 0.94574 0.84453 1.86585 1.60670 1.47230 1.32516 1.21914 0.74754 0.83871 0.83405 1.90745 1.56158 1.19720 1.74832 1.18668 1.03847 0.96042 0.92305 1.20618 1.05579 0.94917 0.99140 1.20691 0.99412 0.98634 0.94882 1.21600 0.99448 0.94521 0.99606 1.17531 0.90954 0.91355 0.90763 1.19555 1.19539 1.17585 0.92288 0.90072 1.25909 0.96157 0.93397 0.98761 1.69787 1.28196 1.29585 1.14441 0.86279 0.81900 0.79253 0.79085 1.19308 1.18398 1.20077 1.21220 1.00374 0.98962 0.96723 0.91260 0.91697 0.92152 0.92166 0.88885 0.90099 0.89495 0.91275 0.91151 0.87844 0.88426 0.85823 0.90634 0.87276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.39 9.30 37.16 0.35 -1.05 16 2 C 0.08 0.79 3.76 -26.16 -0.10 0.69 16 3 H 0.10 0.93 7.69 -51.93 -0.40 0.53 16 4 O -0.37 -4.22 11.19 -35.23 -0.39 -4.61 16 5 C 0.04 0.40 7.67 38.33 0.29 0.69 16 6 C -0.15 -1.49 6.62 -24.60 -0.16 -1.66 16 7 C -0.12 -1.28 2.96 -89.09 -0.26 -1.55 16 8 H 0.10 1.00 7.70 -51.93 -0.40 0.60 16 9 C 0.08 1.04 4.57 37.15 0.17 1.21 16 10 O -0.35 -6.17 9.34 -40.53 -0.38 -6.55 16 11 C 0.51 10.81 7.90 34.63 0.27 11.08 16 12 O -0.52 -11.92 16.12 -19.24 -0.31 -12.24 16 13 C -0.11 -2.46 5.87 -105.05 -0.62 -3.08 16 14 C -0.18 -3.93 9.62 -38.90 -0.37 -4.30 16 15 C -0.12 -2.59 10.01 -39.73 -0.40 -2.99 16 16 C -0.13 -3.26 8.69 -38.81 -0.34 -3.60 16 17 C 0.10 2.50 5.57 -106.88 -0.59 1.90 16 18 C -0.46 -11.90 9.05 -37.73 -0.34 -12.24 16 19 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 20 C 0.08 1.84 5.14 -17.34 -0.09 1.75 16 21 N -0.79 -19.76 10.97 55.55 0.61 -19.15 16 22 Si 0.91 18.13 29.59 -169.99 -5.03 13.10 16 23 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 24 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 25 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 26 C -0.15 -3.81 9.34 -38.43 -0.36 -4.17 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 28 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.06 0.47 8.11 -51.92 -0.42 0.05 16 30 H 0.06 0.47 8.11 -51.93 -0.42 0.05 16 31 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 32 H 0.08 0.90 7.80 -51.93 -0.41 0.50 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 36 H 0.10 1.97 7.59 -52.49 -0.40 1.57 16 37 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 38 H 0.12 3.11 6.17 -52.49 -0.32 2.78 16 39 H 0.28 6.38 8.30 -40.82 -0.34 6.04 16 40 H 0.11 2.71 7.64 -52.48 -0.40 2.31 16 LS Contribution 338.39 15.07 5.10 5.10 Total: -1.00 -28.15 338.39 -8.63 -36.78 By element: Atomic # 1 Polarization: 10.54 SS G_CDS: -5.67 Total: 4.86 kcal Atomic # 6 Polarization: -14.74 SS G_CDS: -2.55 Total: -17.29 kcal Atomic # 7 Polarization: -19.76 SS G_CDS: 0.61 Total: -19.15 kcal Atomic # 8 Polarization: -22.32 SS G_CDS: -1.08 Total: -23.40 kcal Atomic # 14 Polarization: 18.13 SS G_CDS: -5.03 Total: 13.10 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.15 -8.63 -36.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793444764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.939 kcal (2) G-P(sol) polarization free energy of solvation -28.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds