Wall clock time and date at job start Tue Mar 31 2020 06:20:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.99030 * 2 1 4 4 O 1.43750 * 109.87887 * 238.92597 * 2 1 3 5 5 C 1.44386 * 106.97014 * 267.08612 * 4 2 1 6 6 C 1.55221 * 103.56593 * 320.00738 * 5 4 2 7 7 C 1.54100 * 109.88371 * 121.08946 * 2 1 3 8 8 H 1.09002 * 110.48486 * 358.58826 * 7 2 1 9 9 C 1.52992 * 110.48808 * 236.07505 * 7 2 1 10 10 O 1.45196 * 109.47097 * 176.84409 * 9 7 2 11 11 C 1.34712 * 117.00320 * 179.97438 * 10 9 7 12 12 O 1.21466 * 119.99531 * 0.02562 * 11 10 9 13 13 C 1.47767 * 120.00063 * 179.97438 * 11 10 9 14 14 C 1.39965 * 120.03115 * 0.02562 * 13 11 10 15 15 C 1.38320 * 120.35040 * 179.97438 * 14 13 11 16 16 C 1.37758 * 120.41834 * 0.02562 * 15 14 13 17 17 C 1.40753 * 120.05287 * 359.97438 * 16 15 14 18 18 C 1.41431 * 120.17561 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99925 * 154.98216 * 18 17 16 20 20 C 1.39943 * 120.00021 * 334.98121 * 18 17 16 21 21 N 1.30825 * 119.99923 * 342.52994 * 20 18 17 22 22 Si 1.86803 * 119.99890 * 162.53306 * 20 18 17 23 23 H 1.48495 * 109.47352 * 84.99290 * 22 20 18 24 24 H 1.48499 * 109.47161 * 324.99160 * 22 20 18 25 25 H 1.48505 * 109.46749 * 204.99243 * 22 20 18 26 26 C 1.39049 * 120.02782 * 180.25538 * 13 11 10 27 27 H 1.08998 * 109.47246 * 298.90426 * 1 2 3 28 28 H 1.09001 * 109.47251 * 58.91566 * 1 2 3 29 29 H 1.09009 * 109.46596 * 178.91189 * 1 2 3 30 30 H 1.08996 * 110.61797 * 78.44208 * 5 4 2 31 31 H 1.09006 * 110.61208 * 201.44125 * 5 4 2 32 32 H 1.08997 * 110.89853 * 278.74904 * 6 5 4 33 33 H 1.09000 * 111.02159 * 155.07075 * 6 5 4 34 34 H 1.08997 * 109.47860 * 56.84222 * 9 7 2 35 35 H 1.09006 * 109.47252 * 296.83691 * 9 7 2 36 36 H 1.08001 * 119.82641 * 0.02562 * 14 13 11 37 37 H 1.07998 * 119.78462 * 180.02562 * 15 14 13 38 38 H 1.07999 * 119.96873 * 179.97438 * 16 15 14 39 39 H 0.97000 * 119.99646 * 179.97438 * 21 20 18 40 40 H 1.08003 * 120.20606 * 0.02692 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9026 1.0244 0.0000 4 8 2.0188 -0.6977 -1.1579 5 6 2.2281 -2.0713 -0.7650 6 6 2.8319 -1.9544 0.6602 7 6 2.0541 -0.7483 1.2410 8 1 1.2239 -1.0913 1.8585 9 6 2.9884 0.1505 2.0533 10 8 3.4095 -0.5487 3.2541 11 6 4.2417 0.1088 4.0847 12 8 4.6052 1.2356 3.8134 13 6 4.7114 -0.5403 5.3263 14 6 4.2926 -1.8385 5.6397 15 6 4.7286 -2.4526 6.7999 16 6 5.5793 -1.7941 7.6603 17 6 6.0114 -0.4881 7.3621 18 6 6.8843 0.1906 8.2440 19 1 7.5256 0.9755 7.8710 20 6 6.9171 -0.1549 9.5997 21 7 5.9337 -0.8401 10.1240 22 14 8.3649 0.3625 10.6606 23 1 8.1420 1.7418 11.1637 24 1 9.6096 0.3258 9.8516 25 1 8.4940 -0.5688 11.8101 26 6 5.5662 0.1398 6.1867 27 1 -0.3633 0.4967 0.8996 28 1 -0.3634 0.5306 -0.8801 29 1 -0.3633 -1.0276 -0.0195 30 1 1.2814 -2.6107 -0.7359 31 1 2.9296 -2.5610 -1.4405 32 1 3.9000 -1.7424 0.6138 33 1 2.6406 -2.8566 1.2411 34 1 2.4633 1.0646 2.3305 35 1 3.8633 0.4017 1.4535 36 1 3.6260 -2.3639 4.9718 37 1 4.3999 -3.4547 7.0325 38 1 5.9149 -2.2803 8.5644 39 1 5.9566 -1.0799 11.0636 40 1 5.8888 1.1433 5.9511 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793444764.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:44 Heat of formation + Delta-G solvation = -142.380670 kcal Electronic energy + Delta-G solvation = -22252.695074 eV Core-core repulsion = 18802.957841 eV Total energy + Delta-G solvation = -3449.737233 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.60478 -40.60860 -39.20102 -37.50877 -35.63100 -34.12077 -32.16402 -31.93050 -31.71495 -29.21855 -27.30668 -25.80004 -24.38867 -22.80641 -22.57932 -21.77695 -21.49998 -19.61224 -18.41602 -17.80713 -17.59132 -17.24039 -16.91437 -16.68731 -16.40459 -15.52700 -15.26446 -15.19316 -14.94540 -14.34451 -14.25899 -14.22456 -13.99326 -13.56668 -13.18667 -13.04501 -12.87829 -12.85335 -12.68314 -12.59679 -12.31990 -12.11937 -12.07148 -11.93903 -11.78614 -11.51640 -11.46046 -11.33622 -11.08621 -10.65754 -9.60075 -9.50637 -8.69990 -6.42395 0.10271 0.89075 1.39213 1.45092 1.52915 1.60095 1.79691 2.20772 2.69278 2.91985 3.41570 3.52089 3.60164 3.74016 3.99562 4.07429 4.18539 4.23395 4.30653 4.35731 4.40292 4.47481 4.56655 4.69155 4.75707 4.86790 4.91000 4.97644 5.00159 5.06887 5.09591 5.15689 5.21704 5.27921 5.30033 5.40723 5.74460 5.91568 5.92005 5.95952 6.19054 6.54230 6.75696 6.83201 6.86690 8.28469 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.040110 B = 0.002844 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.906635 B = 9842.078228 C =10119.660076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.078 3.922 3 H 0.093 0.907 4 O -0.392 6.392 5 C 0.045 3.955 6 C -0.149 4.149 7 C -0.112 4.112 8 H 0.108 0.892 9 C 0.070 3.930 10 O -0.344 6.344 11 C 0.519 3.481 12 O -0.547 6.547 13 C -0.116 4.116 14 C -0.168 4.168 15 C -0.113 4.113 16 C -0.149 4.149 17 C 0.071 3.929 18 C -0.500 4.500 19 H 0.074 0.926 20 C 0.039 3.961 21 N -0.822 5.822 22 Si 0.983 3.017 23 H -0.264 1.264 24 H -0.261 1.261 25 H -0.262 1.262 26 C -0.179 4.179 27 H 0.077 0.923 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.066 0.934 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.065 0.935 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.115 0.885 39 H 0.292 0.708 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.654 -4.528 -13.628 16.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.021 3.979 3 H 0.111 0.889 4 O -0.312 6.312 5 C -0.031 4.031 6 C -0.186 4.186 7 C -0.131 4.131 8 H 0.127 0.873 9 C -0.004 4.004 10 O -0.260 6.260 11 C 0.367 3.633 12 O -0.440 6.440 13 C -0.117 4.117 14 C -0.187 4.187 15 C -0.132 4.132 16 C -0.168 4.168 17 C 0.069 3.931 18 C -0.529 4.529 19 H 0.092 0.908 20 C -0.176 4.176 21 N -0.447 5.447 22 Si 0.803 3.197 23 H -0.189 1.189 24 H -0.185 1.185 25 H -0.186 1.186 26 C -0.199 4.199 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.096 0.904 31 H 0.122 0.878 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.155 0.845 37 H 0.151 0.849 38 H 0.133 0.867 39 H 0.103 0.897 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.645 -4.208 -13.736 16.767 hybrid contribution 0.680 0.632 0.789 1.218 sum -7.965 -3.576 -12.947 15.616 Atomic orbital electron populations 1.22242 0.93423 1.03316 1.03291 1.22736 0.95297 0.96668 0.83246 0.88867 1.88900 1.86363 1.22235 1.33694 1.23765 1.00936 0.83455 0.94960 1.23252 1.00050 0.98572 0.96772 1.22651 0.98337 0.95809 0.96280 0.87341 1.23274 0.98472 0.95538 0.83107 1.86544 1.59322 1.46964 1.33186 1.21592 0.74967 0.83412 0.83371 1.90732 1.57135 1.20724 1.75378 1.18892 1.03239 0.96762 0.92825 1.20982 1.04646 0.94062 0.99049 1.21052 0.97988 0.99938 0.94176 1.21637 1.00737 0.94350 1.00116 1.17833 0.91624 0.92291 0.91369 1.19779 1.20755 1.18703 0.93694 0.90823 1.26696 0.98522 0.93113 0.99297 1.69809 1.29495 1.30114 1.15304 0.85209 0.78031 0.79109 0.77354 1.18884 1.18470 1.18558 1.21191 1.02126 0.98848 0.97733 0.90456 0.91373 0.91476 0.90435 0.87765 0.91475 0.88490 0.90875 0.91664 0.84531 0.84884 0.86738 0.89705 0.88773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.31 9.30 71.98 0.67 -1.64 16 2 C 0.08 1.42 3.76 30.97 0.12 1.53 16 3 H 0.09 1.71 7.69 -2.39 -0.02 1.69 16 4 O -0.39 -8.18 11.19 -148.98 -1.67 -9.85 16 5 C 0.04 0.71 7.67 72.74 0.56 1.26 16 6 C -0.15 -2.71 6.62 31.98 0.21 -2.50 16 7 C -0.11 -2.19 2.96 -9.80 -0.03 -2.22 16 8 H 0.11 1.91 7.70 -2.39 -0.02 1.89 16 9 C 0.07 1.85 4.57 71.98 0.33 2.18 16 10 O -0.34 -11.50 9.34 -56.22 -0.53 -12.02 16 11 C 0.52 21.70 7.90 70.34 0.56 22.25 16 12 O -0.55 -25.23 16.12 19.95 0.32 -24.91 16 13 C -0.12 -5.31 5.87 -20.14 -0.12 -5.43 16 14 C -0.17 -6.89 9.62 22.71 0.22 -6.67 16 15 C -0.11 -4.80 10.01 22.18 0.22 -4.58 16 16 C -0.15 -7.40 8.69 22.77 0.20 -7.20 16 17 C 0.07 3.81 5.57 -21.32 -0.12 3.69 16 18 C -0.50 -26.88 9.05 23.47 0.21 -26.67 16 19 H 0.07 3.89 7.90 -2.91 -0.02 3.87 16 20 C 0.04 1.93 5.14 85.26 0.44 2.37 16 21 N -0.82 -41.25 10.97 21.83 0.24 -41.01 16 22 Si 0.98 37.38 29.59 68.60 2.03 39.41 16 23 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 24 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 25 H -0.26 -9.26 7.11 99.48 0.71 -8.56 16 26 C -0.18 -9.25 9.34 23.02 0.21 -9.03 16 27 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.07 0.85 8.11 -2.38 -0.02 0.83 16 30 H 0.08 0.97 8.11 -2.39 -0.02 0.95 16 31 H 0.10 1.39 8.14 -2.38 -0.02 1.37 16 32 H 0.07 1.41 7.80 -2.39 -0.02 1.39 16 33 H 0.10 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.06 1.81 8.04 -2.38 -0.02 1.79 16 36 H 0.14 4.68 7.59 -2.91 -0.02 4.65 16 37 H 0.13 4.64 8.06 -2.91 -0.02 4.62 16 38 H 0.11 5.84 6.17 -2.91 -0.02 5.82 16 39 H 0.29 13.13 8.30 -92.71 -0.77 12.37 16 40 H 0.09 4.99 7.64 -2.91 -0.02 4.96 16 Total: -1.00 -61.50 338.39 5.11 -56.40 By element: Atomic # 1 Polarization: 23.61 SS G_CDS: 1.03 Total: 24.65 kcal Atomic # 6 Polarization: -36.34 SS G_CDS: 3.68 Total: -32.66 kcal Atomic # 7 Polarization: -41.25 SS G_CDS: 0.24 Total: -41.01 kcal Atomic # 8 Polarization: -44.91 SS G_CDS: -1.87 Total: -46.78 kcal Atomic # 14 Polarization: 37.38 SS G_CDS: 2.03 Total: 39.41 kcal Total: -61.50 5.11 -56.40 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793444764.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.984 kcal (2) G-P(sol) polarization free energy of solvation -61.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds