Wall clock time and date at job start Tue Mar 31 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.99001 * 2 1 4 4 O 1.43744 * 109.87935 * 121.08611 * 2 1 3 5 5 C 1.44375 * 106.97395 * 145.93905 * 4 2 1 6 6 C 1.54999 * 103.49158 * 319.93768 * 5 4 2 7 7 C 1.54099 * 109.87920 * 238.91790 * 2 1 3 8 8 H 1.08997 * 110.60066 * 119.80804 * 7 2 1 9 9 C 1.53004 * 110.48501 * 357.22056 * 7 2 1 10 10 O 1.45202 * 109.46855 * 178.77863 * 9 7 2 11 11 C 1.34705 * 116.99882 * 179.97438 * 10 9 7 12 12 O 1.21466 * 120.00044 * 359.97438 * 11 10 9 13 13 C 1.47771 * 119.99938 * 180.02562 * 11 10 9 14 14 C 1.39962 * 120.03159 * 359.97438 * 13 11 10 15 15 C 1.38316 * 120.35455 * 179.97438 * 14 13 11 16 16 C 1.37761 * 120.41673 * 359.97438 * 15 14 13 17 17 C 1.40751 * 120.04879 * 359.97438 * 16 15 14 18 18 C 1.41445 * 120.17431 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00324 * 154.70894 * 18 17 16 20 20 C 1.39945 * 119.99705 * 334.70597 * 18 17 16 21 21 N 1.30822 * 119.99806 * 334.14063 * 20 18 17 22 22 Si 1.86796 * 119.99745 * 154.14144 * 20 18 17 23 23 H 1.48504 * 109.47053 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47157 * 59.99909 * 22 20 18 25 25 H 1.48501 * 109.47215 * 300.00112 * 22 20 18 26 26 C 1.39053 * 120.02716 * 180.21211 * 13 11 10 27 27 H 1.08999 * 109.47025 * 181.08468 * 1 2 3 28 28 H 1.09004 * 109.46998 * 301.08068 * 1 2 3 29 29 H 1.08991 * 109.47117 * 61.08235 * 1 2 3 30 30 H 1.08998 * 110.61930 * 201.43339 * 5 4 2 31 31 H 1.09007 * 110.62212 * 78.44084 * 5 4 2 32 32 H 1.08996 * 110.90346 * 278.82718 * 6 5 4 33 33 H 1.08999 * 110.93896 * 155.23844 * 6 5 4 34 34 H 1.09001 * 109.47500 * 58.78117 * 9 7 2 35 35 H 1.09003 * 109.47001 * 298.77742 * 9 7 2 36 36 H 1.08000 * 119.82495 * 359.96012 * 14 13 11 37 37 H 1.08004 * 119.78904 * 180.02562 * 15 14 13 38 38 H 1.08005 * 119.97312 * 179.97438 * 16 15 14 39 39 H 0.96994 * 120.00692 * 354.28583 * 21 20 18 40 40 H 1.07992 * 120.20936 * 0.02562 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 8 2.0188 -0.6980 1.1577 5 6 3.2379 -1.3641 0.7647 6 6 2.9196 -1.8914 -0.6577 7 6 2.0540 -0.7482 -1.2411 8 1 2.6614 -0.0871 -1.8593 9 6 0.8898 -1.3190 -2.0534 10 8 1.4062 -1.9934 -3.2311 11 6 0.5041 -2.5557 -4.0585 12 8 -0.6813 -2.4851 -3.8030 13 6 0.9567 -3.2596 -5.2764 14 6 2.3225 -3.3419 -5.5712 15 6 2.7536 -3.9995 -6.7091 16 6 1.8444 -4.5814 -7.5650 17 6 0.4669 -4.5100 -7.2847 18 6 -0.4689 -5.1061 -8.1620 19 1 -1.4339 -5.4183 -7.7911 20 6 -0.1442 -5.2913 -9.5106 21 7 0.7380 -4.5137 -10.0837 22 14 -0.9706 -6.6487 -10.4923 23 1 -0.4565 -6.6353 -11.8855 24 1 -2.4391 -6.4275 -10.5039 25 1 -0.6729 -7.9627 -9.8679 26 6 0.0258 -3.8365 -6.1332 27 1 -0.3633 -1.0275 0.0195 28 1 -0.3633 0.5305 0.8802 29 1 -0.3633 0.4969 -0.8995 30 1 3.4586 -2.1907 1.4400 31 1 4.0686 -0.6588 0.7355 32 1 2.3540 -2.8219 -0.6099 33 1 3.8329 -2.0228 -1.2379 34 1 0.2285 -0.5084 -2.3596 35 1 0.3342 -2.0299 -1.4418 36 1 3.0436 -2.8893 -4.9067 37 1 3.8097 -4.0579 -6.9274 38 1 2.1889 -5.0928 -8.4517 39 1 1.1057 -3.7579 -9.5995 40 1 -1.0293 -3.7719 -5.9122 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793444765.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:48 Heat of formation + Delta-G solvation = -129.562262 kcal Electronic energy + Delta-G solvation = -22435.756356 eV Core-core repulsion = 18986.574971 eV Total energy + Delta-G solvation = -3449.181385 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.38332 -39.53786 -37.65299 -36.05695 -34.04325 -33.46960 -31.69101 -30.06313 -29.87893 -27.32517 -25.38195 -25.14132 -23.10237 -22.39621 -21.09483 -20.13014 -19.93261 -18.37801 -17.24862 -16.53352 -16.22241 -15.91109 -15.85821 -15.39292 -14.83318 -14.25720 -14.12570 -13.97391 -13.55993 -13.31352 -12.88621 -12.71112 -12.54168 -12.48822 -12.13897 -12.04677 -11.64810 -11.36360 -11.26556 -11.15146 -11.04342 -10.83114 -10.73066 -10.46830 -10.38466 -10.31069 -9.94273 -9.73586 -9.62350 -9.11214 -7.97430 -7.83193 -7.31035 -4.58112 1.74913 2.62627 2.97020 3.10842 3.15235 3.31646 3.43679 3.59991 3.95158 4.26953 4.37194 4.45152 4.61987 4.79867 4.92881 5.07406 5.08144 5.25037 5.29761 5.31849 5.32641 5.50256 5.52494 5.56168 5.77038 5.82400 5.89117 5.96655 5.98404 6.20155 6.51802 6.64936 6.66428 6.74782 6.80527 7.05277 7.44460 7.51996 7.56309 7.68902 7.97427 8.05413 8.32167 8.54080 8.70897 9.93906 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.038426 B = 0.002969 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.489051 B = 9428.289753 C = 9860.818044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.083 3.917 3 H 0.075 0.925 4 O -0.375 6.375 5 C 0.045 3.955 6 C -0.147 4.147 7 C -0.120 4.120 8 H 0.096 0.904 9 C 0.073 3.927 10 O -0.354 6.354 11 C 0.513 3.487 12 O -0.522 6.522 13 C -0.095 4.095 14 C -0.200 4.200 15 C -0.095 4.095 16 C -0.193 4.193 17 C 0.084 3.916 18 C -0.519 4.519 19 H 0.079 0.921 20 C 0.039 3.961 21 N -0.794 5.794 22 Si 1.066 2.934 23 H -0.273 1.273 24 H -0.275 1.275 25 H -0.273 1.273 26 C -0.154 4.154 27 H 0.068 0.932 28 H 0.064 0.936 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.105 0.895 37 H 0.099 0.901 38 H 0.111 0.889 39 H 0.299 0.701 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.474 5.955 13.675 15.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.025 3.975 3 H 0.093 0.907 4 O -0.294 6.294 5 C -0.031 4.031 6 C -0.184 4.184 7 C -0.139 4.139 8 H 0.114 0.886 9 C -0.001 4.001 10 O -0.271 6.271 11 C 0.360 3.640 12 O -0.412 6.412 13 C -0.096 4.096 14 C -0.220 4.220 15 C -0.114 4.114 16 C -0.212 4.212 17 C 0.081 3.919 18 C -0.547 4.547 19 H 0.098 0.902 20 C -0.183 4.183 21 N -0.416 5.416 22 Si 0.889 3.111 23 H -0.198 1.198 24 H -0.200 1.200 25 H -0.199 1.199 26 C -0.173 4.173 27 H 0.087 0.913 28 H 0.083 0.917 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.129 0.871 39 H 0.112 0.888 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 4.033 5.305 12.468 14.137 hybrid contribution 0.098 0.897 1.414 1.677 sum 4.131 6.202 13.882 15.756 Atomic orbital electron populations 1.22094 0.93638 1.03467 1.02750 1.22662 0.95378 0.95453 0.84017 0.90740 1.88893 1.39857 1.67757 1.32901 1.23580 0.87549 0.96390 0.95614 1.23187 1.00847 0.98588 0.95797 1.22596 0.96858 0.97975 0.96427 0.88611 1.23160 0.95517 0.96595 0.84797 1.86573 1.40497 1.65891 1.34143 1.21868 0.83736 0.75417 0.82991 1.90749 1.18257 1.57985 1.74242 1.18730 0.95034 1.03260 0.92603 1.20547 0.93345 1.08116 0.99948 1.20609 0.97911 0.98243 0.94621 1.21402 0.93048 1.05102 1.01687 1.17588 0.92462 0.89954 0.91921 1.20579 1.02667 1.36014 0.95414 0.90246 1.27066 0.94889 0.99931 0.96381 1.70474 1.19837 1.10753 1.40575 0.83618 0.76373 0.74980 0.76100 1.19782 1.20006 1.19876 1.21199 0.97501 1.01492 0.97144 0.91310 0.91659 0.90707 0.88837 0.92053 0.90128 0.89493 0.90913 0.90923 0.87658 0.88255 0.87078 0.88752 0.87166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.56 8.40 37.16 0.31 -1.25 16 2 C 0.08 0.82 4.05 -26.15 -0.11 0.72 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 4 O -0.37 -4.25 11.19 -35.23 -0.39 -4.65 16 5 C 0.05 0.41 7.72 38.21 0.29 0.70 16 6 C -0.15 -1.49 6.56 -24.72 -0.16 -1.65 16 7 C -0.12 -1.29 3.34 -89.09 -0.30 -1.59 16 8 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 9 C 0.07 1.00 3.58 37.16 0.13 1.14 16 10 O -0.35 -6.13 9.30 -40.51 -0.38 -6.51 16 11 C 0.51 10.70 7.90 34.63 0.27 10.97 16 12 O -0.52 -11.74 16.12 -19.24 -0.31 -12.05 16 13 C -0.10 -2.16 5.87 -105.05 -0.62 -2.78 16 14 C -0.20 -4.25 9.62 -38.91 -0.37 -4.62 16 15 C -0.10 -2.07 10.01 -39.73 -0.40 -2.47 16 16 C -0.19 -4.69 7.95 -38.81 -0.31 -4.99 16 17 C 0.08 2.15 5.30 -106.87 -0.57 1.59 16 18 C -0.52 -13.46 8.98 -37.72 -0.34 -13.79 16 19 H 0.08 2.02 7.96 -52.49 -0.42 1.60 16 20 C 0.04 0.97 4.92 -17.34 -0.09 0.88 16 21 N -0.79 -20.37 12.31 55.55 0.68 -19.68 16 22 Si 1.07 20.91 30.00 -169.99 -5.10 15.81 16 23 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.27 -5.15 7.11 56.52 0.40 -4.74 16 25 H -0.27 -5.18 7.11 56.52 0.40 -4.78 16 26 C -0.15 -3.81 9.34 -38.42 -0.36 -4.17 16 27 H 0.07 0.73 6.75 -51.93 -0.35 0.38 16 28 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.67 6.80 -51.93 -0.35 0.31 16 30 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 0.91 7.83 -51.93 -0.41 0.50 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 0.96 6.64 -51.93 -0.34 0.62 16 35 H 0.07 1.02 6.85 -51.93 -0.36 0.66 16 36 H 0.11 1.99 7.59 -52.49 -0.40 1.59 16 37 H 0.10 1.86 8.06 -52.48 -0.42 1.44 16 38 H 0.11 2.75 6.48 -52.48 -0.34 2.41 16 39 H 0.30 7.84 6.71 -40.82 -0.27 7.57 16 40 H 0.11 2.75 7.64 -52.49 -0.40 2.35 16 LS Contribution 331.95 15.07 5.00 5.00 Total: -1.00 -28.27 331.95 -8.49 -36.76 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -5.40 Total: 6.64 kcal Atomic # 6 Polarization: -18.72 SS G_CDS: -2.60 Total: -21.32 kcal Atomic # 7 Polarization: -20.37 SS G_CDS: 0.68 Total: -19.68 kcal Atomic # 8 Polarization: -22.12 SS G_CDS: -1.08 Total: -23.20 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.10 Total: 15.81 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.27 -8.49 -36.76 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793444765.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.806 kcal (2) G-P(sol) polarization free energy of solvation -28.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds