Wall clock time and date at job start Tue Mar 31 2020 06:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.99001 * 2 1 4 4 O 1.43744 * 109.87935 * 121.08611 * 2 1 3 5 5 C 1.44375 * 106.97395 * 145.93905 * 4 2 1 6 6 C 1.54999 * 103.49158 * 319.93768 * 5 4 2 7 7 C 1.54099 * 109.87920 * 238.91790 * 2 1 3 8 8 H 1.08997 * 110.60066 * 119.80804 * 7 2 1 9 9 C 1.53004 * 110.48501 * 357.22056 * 7 2 1 10 10 O 1.45202 * 109.46855 * 178.77863 * 9 7 2 11 11 C 1.34705 * 116.99882 * 179.97438 * 10 9 7 12 12 O 1.21466 * 120.00044 * 359.97438 * 11 10 9 13 13 C 1.47771 * 119.99938 * 180.02562 * 11 10 9 14 14 C 1.39962 * 120.03159 * 359.97438 * 13 11 10 15 15 C 1.38316 * 120.35455 * 179.97438 * 14 13 11 16 16 C 1.37761 * 120.41673 * 359.97438 * 15 14 13 17 17 C 1.40751 * 120.04879 * 359.97438 * 16 15 14 18 18 C 1.41445 * 120.17431 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00324 * 154.70894 * 18 17 16 20 20 C 1.39945 * 119.99705 * 334.70597 * 18 17 16 21 21 N 1.30822 * 119.99806 * 334.14063 * 20 18 17 22 22 Si 1.86796 * 119.99745 * 154.14144 * 20 18 17 23 23 H 1.48504 * 109.47053 * 180.02562 * 22 20 18 24 24 H 1.48503 * 109.47157 * 59.99909 * 22 20 18 25 25 H 1.48501 * 109.47215 * 300.00112 * 22 20 18 26 26 C 1.39053 * 120.02716 * 180.21211 * 13 11 10 27 27 H 1.08999 * 109.47025 * 181.08468 * 1 2 3 28 28 H 1.09004 * 109.46998 * 301.08068 * 1 2 3 29 29 H 1.08991 * 109.47117 * 61.08235 * 1 2 3 30 30 H 1.08998 * 110.61930 * 201.43339 * 5 4 2 31 31 H 1.09007 * 110.62212 * 78.44084 * 5 4 2 32 32 H 1.08996 * 110.90346 * 278.82718 * 6 5 4 33 33 H 1.08999 * 110.93896 * 155.23844 * 6 5 4 34 34 H 1.09001 * 109.47500 * 58.78117 * 9 7 2 35 35 H 1.09003 * 109.47001 * 298.77742 * 9 7 2 36 36 H 1.08000 * 119.82495 * 359.96012 * 14 13 11 37 37 H 1.08004 * 119.78904 * 180.02562 * 15 14 13 38 38 H 1.08005 * 119.97312 * 179.97438 * 16 15 14 39 39 H 0.96994 * 120.00692 * 354.28583 * 21 20 18 40 40 H 1.07992 * 120.20936 * 0.02562 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9027 1.0244 0.0000 4 8 2.0188 -0.6980 1.1577 5 6 3.2379 -1.3641 0.7647 6 6 2.9196 -1.8914 -0.6577 7 6 2.0540 -0.7482 -1.2411 8 1 2.6614 -0.0871 -1.8593 9 6 0.8898 -1.3190 -2.0534 10 8 1.4062 -1.9934 -3.2311 11 6 0.5041 -2.5557 -4.0585 12 8 -0.6813 -2.4851 -3.8030 13 6 0.9567 -3.2596 -5.2764 14 6 2.3225 -3.3419 -5.5712 15 6 2.7536 -3.9995 -6.7091 16 6 1.8444 -4.5814 -7.5650 17 6 0.4669 -4.5100 -7.2847 18 6 -0.4689 -5.1061 -8.1620 19 1 -1.4339 -5.4183 -7.7911 20 6 -0.1442 -5.2913 -9.5106 21 7 0.7380 -4.5137 -10.0837 22 14 -0.9706 -6.6487 -10.4923 23 1 -0.4565 -6.6353 -11.8855 24 1 -2.4391 -6.4275 -10.5039 25 1 -0.6729 -7.9627 -9.8679 26 6 0.0258 -3.8365 -6.1332 27 1 -0.3633 -1.0275 0.0195 28 1 -0.3633 0.5305 0.8802 29 1 -0.3633 0.4969 -0.8995 30 1 3.4586 -2.1907 1.4400 31 1 4.0686 -0.6588 0.7355 32 1 2.3540 -2.8219 -0.6099 33 1 3.8329 -2.0228 -1.2379 34 1 0.2285 -0.5084 -2.3596 35 1 0.3342 -2.0299 -1.4418 36 1 3.0436 -2.8893 -4.9067 37 1 3.8097 -4.0579 -6.9274 38 1 2.1889 -5.0928 -8.4517 39 1 1.1057 -3.7579 -9.5995 40 1 -1.0293 -3.7719 -5.9122 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793444765.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:48 Heat of formation + Delta-G solvation = -143.504716 kcal Electronic energy + Delta-G solvation = -22436.360946 eV Core-core repulsion = 18986.574971 eV Total energy + Delta-G solvation = -3449.785976 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.70746 -40.65039 -39.43119 -37.57374 -35.88287 -34.44042 -32.45734 -31.88095 -31.70659 -28.35900 -27.12178 -26.23302 -24.71151 -23.16395 -22.91790 -21.82750 -20.85016 -20.12914 -18.57846 -17.92309 -17.64159 -17.14032 -16.78167 -16.64582 -16.23544 -15.98479 -15.70980 -15.24005 -15.05998 -14.47896 -14.33564 -14.18109 -13.87628 -13.58577 -13.38247 -13.16875 -13.12051 -12.79661 -12.67513 -12.44904 -12.23542 -12.06703 -11.96600 -11.92082 -11.73222 -11.49496 -11.48140 -11.41771 -10.93800 -10.67762 -9.82279 -9.72039 -9.23724 -6.55188 -0.04684 0.79528 1.49895 1.52754 1.54752 1.73718 1.81705 2.32053 2.62164 2.85748 3.37448 3.40949 3.45941 3.68058 3.96326 4.03032 4.09986 4.19531 4.23194 4.28297 4.36798 4.44621 4.47819 4.59357 4.66960 4.70231 4.84223 4.85453 4.92434 4.99675 5.02097 5.07992 5.16533 5.18931 5.25339 5.58721 5.61238 5.68590 5.77182 5.90874 6.08733 6.17193 6.62658 6.69472 6.80283 7.99110 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.038426 B = 0.002969 C = 0.002839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.489051 B = 9428.289753 C = 9860.818044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.084 3.916 3 H 0.095 0.905 4 O -0.395 6.395 5 C 0.046 3.954 6 C -0.149 4.149 7 C -0.115 4.115 8 H 0.110 0.890 9 C 0.068 3.932 10 O -0.345 6.345 11 C 0.518 3.482 12 O -0.544 6.544 13 C -0.103 4.103 14 C -0.179 4.179 15 C -0.092 4.092 16 C -0.202 4.202 17 C 0.061 3.939 18 C -0.558 4.558 19 H 0.070 0.930 20 C 0.008 3.992 21 N -0.812 5.812 22 Si 1.117 2.883 23 H -0.268 1.268 24 H -0.262 1.262 25 H -0.262 1.262 26 C -0.180 4.180 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.081 0.919 32 H 0.064 0.936 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.140 0.860 37 H 0.138 0.862 38 H 0.102 0.898 39 H 0.285 0.715 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.261 6.582 14.699 17.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.026 3.974 3 H 0.113 0.887 4 O -0.315 6.315 5 C -0.030 4.030 6 C -0.187 4.187 7 C -0.134 4.134 8 H 0.128 0.872 9 C -0.005 4.005 10 O -0.261 6.261 11 C 0.366 3.634 12 O -0.437 6.437 13 C -0.105 4.105 14 C -0.198 4.198 15 C -0.110 4.110 16 C -0.221 4.221 17 C 0.058 3.942 18 C -0.586 4.586 19 H 0.088 0.912 20 C -0.208 4.208 21 N -0.434 5.434 22 Si 0.933 3.067 23 H -0.192 1.192 24 H -0.186 1.186 25 H -0.187 1.187 26 C -0.200 4.200 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.099 0.901 30 H 0.122 0.878 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.116 0.884 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.120 0.880 39 H 0.097 0.903 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 5.843 5.952 13.527 15.892 hybrid contribution -0.361 0.816 1.305 1.581 sum 5.481 6.768 14.833 17.200 Atomic orbital electron populations 1.22114 0.93860 1.02701 1.03476 1.22749 0.95307 0.96124 0.83173 0.88706 1.88877 1.40916 1.68173 1.33564 1.23718 0.87302 0.97075 0.94920 1.23208 1.00905 0.97671 0.96871 1.22638 0.95858 0.98413 0.96463 0.87176 1.23503 0.97181 0.96314 0.83489 1.86530 1.39452 1.65410 1.34725 1.21530 0.83658 0.75293 0.82949 1.90739 1.19313 1.58829 1.74771 1.18962 0.95554 1.02861 0.93080 1.20964 0.93130 1.06085 0.99665 1.21003 0.99417 0.96774 0.93786 1.21457 0.92949 1.05717 1.02011 1.17865 0.93453 0.90400 0.92451 1.20762 1.02918 1.38310 0.96592 0.91166 1.28409 0.94530 1.01006 0.96899 1.70588 1.21377 1.11143 1.40336 0.83007 0.76137 0.72648 0.74886 1.19229 1.18606 1.18692 1.21158 0.97366 1.03213 0.98226 0.92809 0.90839 0.90137 0.87817 0.90131 0.91713 0.88446 0.90415 0.91555 0.84203 0.84465 0.88005 0.90274 0.88760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.93 8.40 71.98 0.60 -2.33 16 2 C 0.08 1.47 4.05 30.97 0.13 1.60 16 3 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 4 O -0.40 -8.10 11.19 -148.98 -1.67 -9.77 16 5 C 0.05 0.70 7.72 72.67 0.56 1.26 16 6 C -0.15 -2.67 6.56 31.89 0.21 -2.46 16 7 C -0.12 -2.18 3.34 -9.80 -0.03 -2.22 16 8 H 0.11 1.82 8.14 -2.39 -0.02 1.80 16 9 C 0.07 1.77 3.58 71.98 0.26 2.03 16 10 O -0.34 -11.29 9.30 -56.15 -0.52 -11.82 16 11 C 0.52 21.30 7.90 70.34 0.56 21.85 16 12 O -0.54 -24.69 16.12 19.94 0.32 -24.36 16 13 C -0.10 -4.65 5.87 -20.14 -0.12 -4.77 16 14 C -0.18 -7.17 9.62 22.71 0.22 -6.95 16 15 C -0.09 -3.78 10.01 22.18 0.22 -3.56 16 16 C -0.20 -9.84 7.95 22.77 0.18 -9.66 16 17 C 0.06 3.23 5.30 -21.32 -0.11 3.12 16 18 C -0.56 -30.10 8.98 23.47 0.21 -29.88 16 19 H 0.07 3.76 7.96 -2.91 -0.02 3.74 16 20 C 0.01 0.41 4.92 85.26 0.42 0.83 16 21 N -0.81 -42.55 12.31 21.83 0.27 -42.28 16 22 Si 1.12 42.35 30.00 68.60 2.06 44.41 16 23 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 24 H -0.26 -9.28 7.11 99.48 0.71 -8.57 16 25 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 26 C -0.18 -9.21 9.34 23.02 0.21 -8.99 16 27 H 0.05 1.11 6.75 -2.39 -0.02 1.09 16 28 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 29 H 0.08 1.32 6.80 -2.39 -0.02 1.30 16 30 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 32 H 0.06 1.36 7.83 -2.39 -0.02 1.35 16 33 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.08 1.95 6.64 -2.39 -0.02 1.94 16 35 H 0.07 1.82 6.85 -2.39 -0.02 1.80 16 36 H 0.14 4.65 7.59 -2.91 -0.02 4.63 16 37 H 0.14 4.61 8.06 -2.91 -0.02 4.58 16 38 H 0.10 5.12 6.48 -2.91 -0.02 5.10 16 39 H 0.28 15.43 6.71 -92.71 -0.62 14.80 16 40 H 0.09 4.99 7.64 -2.91 -0.02 4.97 16 Total: -1.00 -62.20 331.95 5.17 -57.04 By element: Atomic # 1 Polarization: 25.72 SS G_CDS: 1.19 Total: 26.91 kcal Atomic # 6 Polarization: -43.65 SS G_CDS: 3.52 Total: -40.14 kcal Atomic # 7 Polarization: -42.55 SS G_CDS: 0.27 Total: -42.28 kcal Atomic # 8 Polarization: -44.08 SS G_CDS: -1.87 Total: -45.95 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 2.06 Total: 44.41 kcal Total: -62.20 5.17 -57.04 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793444765.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.468 kcal (2) G-P(sol) polarization free energy of solvation -62.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds