Wall clock time and date at job start Tue Mar 31 2020 06:20:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.86962 * 2 1 4 4 O 1.43741 * 110.00427 * 238.91901 * 2 1 3 5 5 C 1.44387 * 106.97382 * 213.99171 * 4 2 1 6 6 C 1.54990 * 103.49022 * 40.05861 * 5 4 2 7 7 C 1.54096 * 109.88253 * 121.00612 * 2 1 3 8 8 H 1.08993 * 110.49370 * 240.41854 * 7 2 1 9 9 C 1.52999 * 110.48460 * 2.93184 * 7 2 1 10 10 O 1.45204 * 109.47120 * 184.99441 * 9 7 2 11 11 C 1.34705 * 116.99798 * 179.97438 * 10 9 7 12 12 O 1.21471 * 120.00341 * 0.02562 * 11 10 9 13 13 C 1.47778 * 119.99920 * 180.02562 * 11 10 9 14 14 C 1.39975 * 120.02703 * 0.02678 * 13 11 10 15 15 C 1.38315 * 120.35023 * 179.97438 * 14 13 11 16 16 C 1.37755 * 120.41627 * 359.78491 * 15 14 13 17 17 C 1.40753 * 120.05500 * 0.47228 * 16 15 14 18 18 C 1.41438 * 120.17908 * 179.78562 * 17 16 15 19 19 H 1.08003 * 120.00429 * 204.96871 * 18 17 16 20 20 C 1.39943 * 119.99758 * 24.97338 * 18 17 16 21 21 N 1.30821 * 120.00081 * 17.48356 * 20 18 17 22 22 Si 1.86798 * 119.99753 * 197.48299 * 20 18 17 23 23 H 1.48510 * 109.47086 * 265.18665 * 22 20 18 24 24 H 1.48496 * 109.47286 * 25.18283 * 22 20 18 25 25 H 1.48498 * 109.46980 * 145.18719 * 22 20 18 26 26 C 1.39040 * 120.03174 * 180.02562 * 13 11 10 27 27 H 1.08994 * 109.47473 * 298.98880 * 1 2 3 28 28 H 1.09001 * 109.47151 * 58.99411 * 1 2 3 29 29 H 1.09005 * 109.46789 * 178.98700 * 1 2 3 30 30 H 1.08999 * 110.62186 * 158.56250 * 5 4 2 31 31 H 1.09008 * 110.61291 * 281.55812 * 5 4 2 32 32 H 1.09010 * 110.90571 * 204.78174 * 6 5 4 33 33 H 1.08996 * 110.91191 * 81.17675 * 6 5 4 34 34 H 1.09005 * 109.47334 * 65.00117 * 9 7 2 35 35 H 1.08996 * 109.47415 * 304.99890 * 9 7 2 36 36 H 1.07998 * 119.82025 * 359.97438 * 14 13 11 37 37 H 1.08000 * 119.78665 * 180.02562 * 15 14 13 38 38 H 1.08006 * 119.97422 * 180.23493 * 16 15 14 39 39 H 0.97000 * 119.99935 * 179.97438 * 21 20 18 40 40 H 1.08005 * 120.21001 * 359.97438 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0217 -0.6973 -1.1568 5 6 3.2418 -1.3608 -0.7620 6 6 2.9227 -1.8882 0.6601 7 6 2.0540 -0.7465 1.2420 8 1 2.6577 -0.0820 1.8601 9 6 0.8900 -1.3194 2.0531 10 8 1.3988 -1.9142 3.2761 11 6 0.4958 -2.4672 4.1089 12 8 -0.6842 -2.4533 3.8211 13 6 0.9409 -3.0906 5.3726 14 6 2.3004 -3.1064 5.7052 15 6 2.7243 -3.6877 6.8865 16 6 1.8136 -4.2536 7.7513 17 6 0.4428 -4.2523 7.4316 18 6 -0.4940 -4.8366 8.3155 19 1 -1.4378 -5.2018 7.9381 20 6 -0.1981 -4.9417 9.6793 21 7 0.7587 -4.2164 10.1988 22 14 -1.1695 -6.1174 10.7579 23 1 -2.2814 -5.3834 11.4140 24 1 -1.7245 -7.2122 9.9220 25 1 -0.2751 -6.6913 11.7951 26 6 0.0095 -3.6620 6.2324 27 1 -0.3634 0.4980 0.8988 28 1 -0.3633 0.5294 -0.8808 29 1 -0.3633 -1.0276 -0.0182 30 1 3.4650 -2.1872 -1.4367 31 1 4.0708 -0.6536 -0.7321 32 1 3.8359 -2.0169 1.2412 33 1 2.3592 -2.8199 0.6121 34 1 0.3773 -2.0806 1.4650 35 1 0.1916 -0.5202 2.3009 36 1 3.0222 -2.6624 5.0357 37 1 3.7755 -3.6944 7.1342 38 1 2.1520 -4.7022 8.6737 39 1 0.9635 -4.2889 11.1441 40 1 -1.0407 -3.6519 5.9803 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000793444766.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:52 Heat of formation + Delta-G solvation = -123.661645 kcal Electronic energy + Delta-G solvation = -22381.868964 eV Core-core repulsion = 18932.943449 eV Total energy + Delta-G solvation = -3448.925516 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -40.32274 -39.46761 -37.42566 -35.95861 -33.81529 -33.42353 -31.66509 -30.09714 -29.90636 -27.29619 -25.51114 -25.13828 -23.01211 -22.36866 -20.86874 -20.07781 -19.89583 -17.94429 -17.13292 -16.40722 -16.03618 -15.86124 -15.78203 -15.43673 -15.01931 -14.60306 -13.97468 -13.73358 -13.35657 -13.20932 -12.88083 -12.66113 -12.51504 -12.43641 -12.11896 -11.75820 -11.61091 -11.28648 -11.21168 -11.14197 -11.10874 -10.83481 -10.73157 -10.59757 -10.35693 -10.25256 -9.90429 -9.67666 -9.57126 -9.27716 -7.75747 -7.63050 -6.87868 -4.48674 1.89970 2.68021 3.02637 3.04553 3.05421 3.11619 3.54844 3.62787 3.87030 4.29822 4.41263 4.52188 4.66663 4.82963 4.96060 5.11448 5.13398 5.28368 5.35329 5.37861 5.49321 5.55092 5.57169 5.61150 5.80858 5.86252 5.93096 6.00378 6.12368 6.29883 6.67786 6.72164 6.79149 6.87843 6.95777 7.10168 7.24352 7.57207 7.75787 7.85712 8.03908 8.41710 8.44389 8.72089 8.75828 10.08059 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.038529 B = 0.002951 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.548933 B = 9486.787209 C = 9942.858891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.082 3.918 3 H 0.074 0.926 4 O -0.375 6.375 5 C 0.045 3.955 6 C -0.147 4.147 7 C -0.120 4.120 8 H 0.096 0.904 9 C 0.073 3.927 10 O -0.355 6.355 11 C 0.513 3.487 12 O -0.525 6.525 13 C -0.108 4.108 14 C -0.183 4.183 15 C -0.118 4.118 16 C -0.132 4.132 17 C 0.096 3.904 18 C -0.460 4.460 19 H 0.081 0.919 20 C 0.075 3.925 21 N -0.795 5.795 22 Si 0.910 3.090 23 H -0.270 1.270 24 H -0.259 1.259 25 H -0.275 1.275 26 C -0.153 4.153 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.093 0.907 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.124 0.876 39 H 0.282 0.718 40 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.924 5.325 -13.211 15.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.025 3.975 3 H 0.092 0.908 4 O -0.294 6.294 5 C -0.031 4.031 6 C -0.185 4.185 7 C -0.139 4.139 8 H 0.115 0.885 9 C -0.001 4.001 10 O -0.272 6.272 11 C 0.361 3.639 12 O -0.415 6.415 13 C -0.109 4.109 14 C -0.203 4.203 15 C -0.136 4.136 16 C -0.152 4.152 17 C 0.094 3.906 18 C -0.490 4.490 19 H 0.099 0.901 20 C -0.142 4.142 21 N -0.420 5.420 22 Si 0.735 3.265 23 H -0.195 1.195 24 H -0.183 1.183 25 H -0.200 1.200 26 C -0.173 4.173 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.111 0.889 31 H 0.079 0.921 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.092 0.908 36 H 0.121 0.879 37 H 0.116 0.884 38 H 0.142 0.858 39 H 0.093 0.907 40 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.582 5.404 -13.303 15.072 hybrid contribution -0.353 -0.334 0.755 0.898 sum 4.229 5.070 -12.548 14.179 Atomic orbital electron populations 1.22096 0.93646 1.03466 1.02720 1.22656 0.95366 0.95461 0.84055 0.90790 1.88891 1.39719 1.67902 1.32920 1.23578 0.87536 0.96413 0.95600 1.23203 1.00849 0.98591 0.95819 1.22591 0.96892 0.97979 0.96392 0.88549 1.23160 0.95553 0.97724 0.83656 1.86577 1.40855 1.68591 1.31203 1.21899 0.83579 0.74603 0.83847 1.90743 1.18601 1.56808 1.75339 1.18676 0.95150 1.05255 0.91793 1.20618 0.93484 1.07389 0.98781 1.20691 0.98111 1.00153 0.94671 1.21598 0.92687 1.01315 0.99597 1.17535 0.92679 0.89651 0.90744 1.19574 1.03060 1.34614 0.91709 0.90054 1.25908 0.94971 0.94462 0.98892 1.69788 1.26538 1.31267 1.14405 0.86257 0.79919 0.80984 0.79387 1.19485 1.18316 1.19967 1.21215 0.97412 1.02223 0.96437 0.90655 0.91703 0.91325 0.88861 0.92063 0.89487 0.90132 0.91046 0.90849 0.87852 0.88431 0.85820 0.90665 0.87274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.58 8.39 37.15 0.31 -1.27 16 2 C 0.08 0.83 4.05 -26.16 -0.11 0.73 16 3 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 4 O -0.37 -4.28 11.19 -35.23 -0.39 -4.68 16 5 C 0.05 0.41 7.72 38.21 0.29 0.70 16 6 C -0.15 -1.50 6.63 -24.72 -0.16 -1.66 16 7 C -0.12 -1.31 3.32 -89.09 -0.30 -1.60 16 8 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 9 C 0.07 1.01 3.60 37.16 0.13 1.15 16 10 O -0.35 -6.23 9.38 -40.51 -0.38 -6.61 16 11 C 0.51 10.81 7.90 34.63 0.27 11.08 16 12 O -0.52 -11.88 16.12 -19.24 -0.31 -12.19 16 13 C -0.11 -2.47 5.87 -105.05 -0.62 -3.08 16 14 C -0.18 -3.94 9.62 -38.90 -0.37 -4.31 16 15 C -0.12 -2.60 10.01 -39.73 -0.40 -2.99 16 16 C -0.13 -3.27 8.69 -38.81 -0.34 -3.60 16 17 C 0.10 2.50 5.57 -106.87 -0.59 1.90 16 18 C -0.46 -11.90 9.05 -37.73 -0.34 -12.24 16 19 H 0.08 2.03 7.90 -52.48 -0.41 1.62 16 20 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 21 N -0.79 -19.76 10.96 55.55 0.61 -19.15 16 22 Si 0.91 18.12 29.59 -169.99 -5.03 13.09 16 23 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 24 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 25 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 26 C -0.15 -3.81 9.34 -38.43 -0.36 -4.17 16 27 H 0.07 0.69 6.72 -51.93 -0.35 0.34 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.73 6.86 -51.93 -0.36 0.37 16 30 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 32 H 0.09 0.82 8.14 -51.92 -0.42 0.40 16 33 H 0.08 0.90 7.77 -51.93 -0.40 0.50 16 34 H 0.07 1.01 6.99 -51.93 -0.36 0.65 16 35 H 0.07 0.99 6.40 -51.93 -0.33 0.65 16 36 H 0.10 1.97 7.59 -52.49 -0.40 1.58 16 37 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 38 H 0.12 3.11 6.17 -52.48 -0.32 2.79 16 39 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 40 H 0.11 2.71 7.64 -52.48 -0.40 2.31 16 LS Contribution 332.69 15.07 5.01 5.01 Total: -1.00 -28.19 332.69 -8.59 -36.78 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -5.44 Total: 5.37 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -2.66 Total: -17.63 kcal Atomic # 7 Polarization: -19.76 SS G_CDS: 0.61 Total: -19.15 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -1.08 Total: -23.47 kcal Atomic # 14 Polarization: 18.12 SS G_CDS: -5.03 Total: 13.09 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.19 -8.59 -36.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793444766.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.885 kcal (2) G-P(sol) polarization free energy of solvation -28.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds