Wall clock time and date at job start Tue Mar 31 2020 06:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.86962 * 2 1 4 4 O 1.43741 * 110.00427 * 238.91901 * 2 1 3 5 5 C 1.44387 * 106.97382 * 213.99171 * 4 2 1 6 6 C 1.54990 * 103.49022 * 40.05861 * 5 4 2 7 7 C 1.54096 * 109.88253 * 121.00612 * 2 1 3 8 8 H 1.08993 * 110.49370 * 240.41854 * 7 2 1 9 9 C 1.52999 * 110.48460 * 2.93184 * 7 2 1 10 10 O 1.45204 * 109.47120 * 184.99441 * 9 7 2 11 11 C 1.34705 * 116.99798 * 179.97438 * 10 9 7 12 12 O 1.21471 * 120.00341 * 0.02562 * 11 10 9 13 13 C 1.47778 * 119.99920 * 180.02562 * 11 10 9 14 14 C 1.39975 * 120.02703 * 0.02678 * 13 11 10 15 15 C 1.38315 * 120.35023 * 179.97438 * 14 13 11 16 16 C 1.37755 * 120.41627 * 359.78491 * 15 14 13 17 17 C 1.40753 * 120.05500 * 0.47228 * 16 15 14 18 18 C 1.41438 * 120.17908 * 179.78562 * 17 16 15 19 19 H 1.08003 * 120.00429 * 204.96871 * 18 17 16 20 20 C 1.39943 * 119.99758 * 24.97338 * 18 17 16 21 21 N 1.30821 * 120.00081 * 17.48356 * 20 18 17 22 22 Si 1.86798 * 119.99753 * 197.48299 * 20 18 17 23 23 H 1.48510 * 109.47086 * 265.18665 * 22 20 18 24 24 H 1.48496 * 109.47286 * 25.18283 * 22 20 18 25 25 H 1.48498 * 109.46980 * 145.18719 * 22 20 18 26 26 C 1.39040 * 120.03174 * 180.02562 * 13 11 10 27 27 H 1.08994 * 109.47473 * 298.98880 * 1 2 3 28 28 H 1.09001 * 109.47151 * 58.99411 * 1 2 3 29 29 H 1.09005 * 109.46789 * 178.98700 * 1 2 3 30 30 H 1.08999 * 110.62186 * 158.56250 * 5 4 2 31 31 H 1.09008 * 110.61291 * 281.55812 * 5 4 2 32 32 H 1.09010 * 110.90571 * 204.78174 * 6 5 4 33 33 H 1.08996 * 110.91191 * 81.17675 * 6 5 4 34 34 H 1.09005 * 109.47334 * 65.00117 * 9 7 2 35 35 H 1.08996 * 109.47415 * 304.99890 * 9 7 2 36 36 H 1.07998 * 119.82025 * 359.97438 * 14 13 11 37 37 H 1.08000 * 119.78665 * 180.02562 * 15 14 13 38 38 H 1.08006 * 119.97422 * 180.23493 * 16 15 14 39 39 H 0.97000 * 119.99935 * 179.97438 * 21 20 18 40 40 H 1.08005 * 120.21001 * 359.97438 * 26 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9004 1.0251 0.0000 4 8 2.0217 -0.6973 -1.1568 5 6 3.2418 -1.3608 -0.7620 6 6 2.9227 -1.8882 0.6601 7 6 2.0540 -0.7465 1.2420 8 1 2.6577 -0.0820 1.8601 9 6 0.8900 -1.3194 2.0531 10 8 1.3988 -1.9142 3.2761 11 6 0.4958 -2.4672 4.1089 12 8 -0.6842 -2.4533 3.8211 13 6 0.9409 -3.0906 5.3726 14 6 2.3004 -3.1064 5.7052 15 6 2.7243 -3.6877 6.8865 16 6 1.8136 -4.2536 7.7513 17 6 0.4428 -4.2523 7.4316 18 6 -0.4940 -4.8366 8.3155 19 1 -1.4378 -5.2018 7.9381 20 6 -0.1981 -4.9417 9.6793 21 7 0.7587 -4.2164 10.1988 22 14 -1.1695 -6.1174 10.7579 23 1 -2.2814 -5.3834 11.4140 24 1 -1.7245 -7.2122 9.9220 25 1 -0.2751 -6.6913 11.7951 26 6 0.0095 -3.6620 6.2324 27 1 -0.3634 0.4980 0.8988 28 1 -0.3633 0.5294 -0.8808 29 1 -0.3633 -1.0276 -0.0182 30 1 3.4650 -2.1872 -1.4367 31 1 4.0708 -0.6536 -0.7321 32 1 3.8359 -2.0169 1.2412 33 1 2.3592 -2.8199 0.6121 34 1 0.3773 -2.0806 1.4650 35 1 0.1916 -0.5202 2.3009 36 1 3.0222 -2.6624 5.0357 37 1 3.7755 -3.6944 7.1342 38 1 2.1520 -4.7022 8.6737 39 1 0.9635 -4.2889 11.1441 40 1 -1.0407 -3.6519 5.9803 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000793444766.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:51 Heat of formation + Delta-G solvation = -137.518281 kcal Electronic energy + Delta-G solvation = -22382.469833 eV Core-core repulsion = 18932.943449 eV Total energy + Delta-G solvation = -3449.526384 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.63095 -40.60465 -39.19078 -37.49161 -35.63196 -34.41460 -32.43994 -31.93123 -31.70796 -28.35171 -27.26383 -26.18374 -24.63667 -23.13870 -22.67903 -21.78169 -20.82377 -19.64666 -18.45983 -17.77339 -17.53374 -17.09622 -16.90535 -16.65539 -16.43603 -16.12351 -15.29771 -15.19545 -15.01151 -14.44959 -14.21424 -14.10905 -13.62389 -13.49492 -13.33320 -13.14947 -13.03495 -12.85213 -12.63596 -12.59957 -12.31408 -12.07487 -12.04620 -11.90305 -11.69037 -11.47163 -11.45474 -11.34515 -11.08730 -10.65520 -9.59911 -9.50501 -8.69939 -6.42280 0.10907 0.88955 1.39321 1.44766 1.53744 1.62385 1.80289 2.20909 2.69354 2.87695 3.41392 3.49000 3.60230 3.73232 4.01847 4.06583 4.14208 4.23625 4.31611 4.35056 4.41333 4.49897 4.56796 4.62779 4.72467 4.86759 4.90676 4.97359 5.02039 5.02234 5.09162 5.13386 5.20957 5.22218 5.31208 5.41133 5.74725 5.92051 5.92800 5.96084 6.19175 6.54411 6.76889 6.83452 6.86864 8.28589 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.038529 B = 0.002951 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 726.548933 B = 9486.787209 C = 9942.858891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.084 3.916 3 H 0.094 0.906 4 O -0.395 6.395 5 C 0.046 3.954 6 C -0.149 4.149 7 C -0.115 4.115 8 H 0.109 0.891 9 C 0.068 3.932 10 O -0.346 6.346 11 C 0.519 3.481 12 O -0.547 6.547 13 C -0.116 4.116 14 C -0.169 4.169 15 C -0.114 4.114 16 C -0.149 4.149 17 C 0.071 3.929 18 C -0.500 4.500 19 H 0.074 0.926 20 C 0.039 3.961 21 N -0.822 5.822 22 Si 0.983 3.017 23 H -0.264 1.264 24 H -0.261 1.261 25 H -0.261 1.261 26 C -0.179 4.179 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.053 0.947 30 H 0.104 0.896 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.137 0.863 37 H 0.133 0.867 38 H 0.115 0.885 39 H 0.292 0.708 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.552 5.972 -13.751 16.361 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.026 3.974 3 H 0.112 0.888 4 O -0.315 6.315 5 C -0.030 4.030 6 C -0.187 4.187 7 C -0.134 4.134 8 H 0.128 0.872 9 C -0.005 4.005 10 O -0.263 6.263 11 C 0.367 3.633 12 O -0.439 6.439 13 C -0.117 4.117 14 C -0.188 4.188 15 C -0.132 4.132 16 C -0.169 4.169 17 C 0.069 3.931 18 C -0.529 4.529 19 H 0.092 0.908 20 C -0.176 4.176 21 N -0.447 5.447 22 Si 0.803 3.197 23 H -0.189 1.189 24 H -0.185 1.185 25 H -0.185 1.185 26 C -0.199 4.199 27 H 0.098 0.902 28 H 0.092 0.908 29 H 0.072 0.928 30 H 0.122 0.878 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.154 0.846 37 H 0.151 0.849 38 H 0.133 0.867 39 H 0.103 0.897 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 6.238 6.067 -13.867 16.371 hybrid contribution -0.783 -0.449 0.783 1.195 sum 5.454 5.618 -13.084 15.248 Atomic orbital electron populations 1.22113 0.93857 1.02728 1.03425 1.22735 0.95302 0.96113 0.83218 0.88804 1.88875 1.40787 1.68311 1.33545 1.23718 0.87261 0.97111 0.94912 1.23225 1.00899 0.97683 0.96879 1.22629 0.95891 0.98448 0.96424 0.87239 1.23500 0.97247 0.97540 0.82213 1.86534 1.39820 1.67968 1.31976 1.21573 0.83501 0.74476 0.83799 1.90730 1.19642 1.57697 1.75845 1.18905 0.95659 1.04791 0.92385 1.20981 0.93281 1.05788 0.98736 1.21050 0.99456 0.98634 0.94026 1.21634 0.92694 1.02475 1.00064 1.17835 0.93647 0.90278 0.91344 1.19795 1.03385 1.36622 0.93119 0.90825 1.26693 0.95967 0.95493 0.99476 1.69810 1.27593 1.32019 1.15302 0.85184 0.78577 0.78475 0.77462 1.18933 1.18489 1.18505 1.21187 0.97307 1.04026 0.97376 0.90151 0.90849 0.92779 0.87768 0.90171 0.88456 0.91607 0.91664 0.90408 0.84561 0.84900 0.86740 0.89714 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 8.39 71.98 0.60 -2.39 16 2 C 0.08 1.51 4.05 30.96 0.13 1.63 16 3 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 4 O -0.40 -8.20 11.19 -148.98 -1.67 -9.87 16 5 C 0.05 0.71 7.72 72.66 0.56 1.28 16 6 C -0.15 -2.72 6.63 31.89 0.21 -2.50 16 7 C -0.12 -2.25 3.32 -9.80 -0.03 -2.28 16 8 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 9 C 0.07 1.81 3.60 71.98 0.26 2.07 16 10 O -0.35 -11.62 9.38 -56.15 -0.53 -12.14 16 11 C 0.52 21.70 7.90 70.35 0.56 22.25 16 12 O -0.55 -25.12 16.12 19.93 0.32 -24.79 16 13 C -0.12 -5.32 5.87 -20.14 -0.12 -5.44 16 14 C -0.17 -6.92 9.62 22.71 0.22 -6.71 16 15 C -0.11 -4.82 10.01 22.17 0.22 -4.59 16 16 C -0.15 -7.42 8.69 22.77 0.20 -7.23 16 17 C 0.07 3.82 5.57 -21.32 -0.12 3.70 16 18 C -0.50 -26.89 9.05 23.47 0.21 -26.67 16 19 H 0.07 3.90 7.90 -2.91 -0.02 3.87 16 20 C 0.04 1.93 5.14 85.26 0.44 2.37 16 21 N -0.82 -41.26 10.96 21.83 0.24 -41.02 16 22 Si 0.98 37.39 29.59 68.60 2.03 39.42 16 23 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 24 H -0.26 -9.89 7.11 99.48 0.71 -9.19 16 25 H -0.26 -9.27 7.11 99.48 0.71 -8.56 16 26 C -0.18 -9.25 9.34 23.02 0.21 -9.03 16 27 H 0.08 1.36 6.72 -2.39 -0.02 1.34 16 28 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.05 1.13 6.86 -2.38 -0.02 1.11 16 30 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.08 0.96 8.14 -2.38 -0.02 0.95 16 32 H 0.10 1.56 8.14 -2.38 -0.02 1.54 16 33 H 0.07 1.39 7.77 -2.39 -0.02 1.37 16 34 H 0.07 1.83 6.99 -2.38 -0.02 1.81 16 35 H 0.08 2.01 6.40 -2.39 -0.02 1.99 16 36 H 0.14 4.68 7.59 -2.91 -0.02 4.66 16 37 H 0.13 4.65 8.06 -2.91 -0.02 4.62 16 38 H 0.11 5.84 6.17 -2.91 -0.02 5.83 16 39 H 0.29 13.11 8.30 -92.71 -0.77 12.35 16 40 H 0.09 4.99 7.64 -2.91 -0.02 4.97 16 Total: -1.00 -61.63 332.69 4.99 -56.64 By element: Atomic # 1 Polarization: 24.28 SS G_CDS: 1.04 Total: 25.33 kcal Atomic # 6 Polarization: -37.11 SS G_CDS: 3.55 Total: -33.56 kcal Atomic # 7 Polarization: -41.26 SS G_CDS: 0.24 Total: -41.02 kcal Atomic # 8 Polarization: -44.93 SS G_CDS: -1.87 Total: -46.81 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.42 kcal Total: -61.63 4.99 -56.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000793444766.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.876 kcal (2) G-P(sol) polarization free energy of solvation -61.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.642 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.518 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds