Wall clock time and date at job start Tue Mar 31 2020 06:26:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.20754 * 119.99768 * 2 1 4 4 C 1.50701 * 119.99793 * 179.97438 * 2 1 3 5 5 H 1.08999 * 109.46691 * 45.00458 * 4 2 1 6 6 C 1.52999 * 109.47299 * 284.99878 * 4 2 1 7 7 O 1.45203 * 109.46691 * 164.99871 * 4 2 1 8 8 C 1.34232 * 116.99996 * 210.00108 * 7 4 2 9 9 O 1.20828 * 119.99833 * 0.02562 * 8 7 4 10 10 C 1.50692 * 120.00057 * 180.02562 * 8 7 4 11 11 C 1.52999 * 109.47073 * 179.97438 * 10 8 7 12 12 H 1.09000 * 109.46932 * 304.99548 * 11 10 8 13 13 C 1.50694 * 109.47331 * 64.99961 * 11 10 8 14 14 H 1.07998 * 120.00000 * 29.59002 * 13 11 10 15 15 C 1.37872 * 120.00426 * 209.59097 * 13 11 10 16 16 N 1.31516 * 119.99797 * 4.95225 * 15 13 11 17 17 Si 1.86794 * 120.00388 * 184.95002 * 15 13 11 18 18 H 1.48501 * 109.47064 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.47150 * 119.99966 * 17 15 13 20 20 H 1.48494 * 109.47422 * 240.00037 * 17 15 13 21 21 C 1.50699 * 109.47109 * 184.99937 * 11 10 8 22 22 C 1.38240 * 120.00294 * 296.77587 * 21 11 10 23 23 C 1.38234 * 120.00243 * 179.78698 * 22 21 11 24 24 C 1.38233 * 119.99842 * 0.44168 * 23 22 21 25 25 C 1.38234 * 120.00021 * 359.80946 * 24 23 22 26 26 C 1.38235 * 119.99945 * 117.04457 * 21 11 10 27 27 H 1.09000 * 109.46845 * 240.00411 * 1 2 3 28 28 H 1.09004 * 109.47189 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47029 * 120.00069 * 1 2 3 30 30 H 1.09004 * 109.47009 * 60.00364 * 6 4 2 31 31 H 1.08993 * 109.46990 * 180.02562 * 6 4 2 32 32 H 1.08998 * 109.47189 * 300.00497 * 6 4 2 33 33 H 1.09003 * 109.47228 * 300.00398 * 10 8 7 34 34 H 1.09008 * 109.47089 * 59.99670 * 10 8 7 35 35 H 0.96996 * 120.00438 * 179.97438 * 16 15 13 36 36 H 1.07999 * 119.99645 * 359.97438 * 22 21 11 37 37 H 1.07999 * 120.00116 * 180.27314 * 23 22 21 38 38 H 1.08000 * 120.00113 * 179.83616 * 24 23 22 39 39 H 1.08009 * 119.99918 * 180.02562 * 25 24 23 40 40 H 1.07994 * 120.00335 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.8129 -1.9833 -0.7258 6 6 2.1922 -1.9329 1.3942 7 8 3.6477 -1.0632 -0.3539 8 6 4.2953 -2.0518 -0.9905 9 8 3.7219 -3.0848 -1.2435 10 6 5.7374 -1.8732 -1.3895 11 6 6.2323 -3.1383 -2.0933 12 1 6.0631 -4.0018 -1.4500 13 6 5.4804 -3.3204 -3.3866 14 1 5.1089 -2.4587 -3.9212 15 6 5.2667 -4.5871 -3.8874 16 7 5.6325 -5.6403 -3.1898 17 14 4.4577 -4.8074 -5.5566 18 1 4.1443 -3.4758 -6.1343 19 1 5.3826 -5.5344 -6.4629 20 1 3.2037 -5.5871 -5.3999 21 6 7.7055 -3.0086 -2.3828 22 6 8.1577 -2.0202 -3.2370 23 6 9.5095 -1.8984 -3.4990 24 6 10.4082 -2.7707 -2.9141 25 6 9.9556 -3.7623 -2.0640 26 6 8.6042 -3.8814 -1.7985 27 1 -0.3633 -0.5138 0.8900 28 1 -0.3634 1.0277 -0.0005 29 1 -0.3633 -0.5138 -0.8899 30 1 1.1509 -2.1145 1.6602 31 1 2.7376 -2.8766 1.3947 32 1 2.6398 -1.2546 2.1206 33 1 5.8247 -1.0228 -2.0659 34 1 6.3410 -1.6931 -0.4998 35 1 5.4819 -6.5315 -3.5419 36 1 7.4551 -1.3413 -3.6972 37 1 9.8632 -1.1235 -4.1629 38 1 11.4641 -2.6773 -3.1209 39 1 10.6579 -4.4436 -1.6066 40 1 8.2506 -4.6560 -1.1342 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795993078.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:08 Heat of formation + Delta-G solvation = -107.028791 kcal Electronic energy + Delta-G solvation = -22935.164500 eV Core-core repulsion = 19486.960239 eV Total energy + Delta-G solvation = -3448.204261 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.25650 -39.02814 -38.32049 -35.95080 -34.05490 -32.49296 -31.51511 -30.03234 -29.62987 -28.87493 -25.92418 -24.48907 -22.91235 -21.67324 -20.70746 -19.55823 -19.29291 -17.19259 -16.73520 -16.45448 -15.88898 -15.62575 -15.13492 -14.85224 -14.57980 -14.22011 -14.04144 -13.86667 -13.37533 -12.82619 -12.79872 -12.55099 -12.43010 -12.28967 -12.21913 -12.10237 -11.74991 -11.66390 -11.36638 -10.94794 -10.79536 -10.61875 -10.39822 -10.29252 -10.10901 -9.73691 -9.50523 -9.41775 -9.09719 -8.42722 -8.06401 -7.66945 -6.00966 -4.01609 1.83102 2.26893 2.30406 2.99247 3.10434 3.31461 3.38972 3.41660 4.05660 4.44947 4.71780 4.81572 4.92139 5.06770 5.14279 5.22323 5.31867 5.39010 5.65035 5.65398 5.71010 5.71387 5.81991 5.84496 6.04308 6.05399 6.11265 6.25798 6.38749 6.48335 6.66201 6.86764 6.96281 7.08859 7.29294 7.38852 7.40268 7.47868 7.80938 7.89919 7.98710 8.28584 8.62916 8.98512 9.60520 11.08878 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.014094 B = 0.005018 C = 0.004180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.132360 B = 5578.086643 C = 6697.242232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.356 3.644 3 O -0.436 6.436 4 C 0.034 3.966 5 H 0.111 0.889 6 C -0.160 4.160 7 O -0.353 6.353 8 C 0.455 3.545 9 O -0.464 6.464 10 C -0.094 4.094 11 C 0.075 3.925 12 H 0.075 0.925 13 C -0.499 4.499 14 H 0.053 0.947 15 C 0.078 3.922 16 N -0.879 5.879 17 Si 0.886 3.114 18 H -0.274 1.274 19 H -0.284 1.284 20 H -0.285 1.285 21 C -0.024 4.024 22 C -0.113 4.113 23 C -0.132 4.132 24 C -0.153 4.153 25 C -0.129 4.129 26 C -0.117 4.117 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.096 0.904 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.260 0.740 36 H 0.115 0.885 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.106 0.894 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.002 7.126 7.060 10.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.229 3.771 3 O -0.307 6.307 4 C -0.023 4.023 5 H 0.129 0.871 6 C -0.218 4.218 7 O -0.272 6.272 8 C 0.296 3.704 9 O -0.346 6.346 10 C -0.131 4.131 11 C 0.056 3.944 12 H 0.093 0.907 13 C -0.537 4.537 14 H 0.071 0.929 15 C -0.126 4.126 16 N -0.516 5.516 17 Si 0.714 3.286 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.025 4.025 22 C -0.131 4.131 23 C -0.150 4.150 24 C -0.171 4.171 25 C -0.147 4.147 26 C -0.136 4.136 27 H 0.113 0.887 28 H 0.105 0.895 29 H 0.115 0.885 30 H 0.095 0.905 31 H 0.096 0.904 32 H 0.086 0.914 33 H 0.108 0.892 34 H 0.097 0.903 35 H 0.069 0.931 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -3.888 7.150 6.979 10.721 hybrid contribution -0.548 -0.557 -1.153 1.393 sum -4.437 6.593 5.825 9.853 Atomic orbital electron populations 1.22288 0.93034 1.05295 1.04970 1.24635 0.91912 0.89385 0.71147 1.90422 1.71942 1.34552 1.33823 1.22984 0.82607 0.97242 0.99461 0.87121 1.22062 1.03274 1.02121 0.94297 1.86710 1.24008 1.45759 1.70697 1.24127 0.90677 0.81356 0.74235 1.90715 1.67430 1.27669 1.48803 1.21604 0.86999 1.03462 1.01068 1.17920 0.86873 0.92231 0.97335 0.90703 1.20763 1.34683 0.92320 1.05886 0.92870 1.24823 0.94747 0.96093 0.96928 1.69905 1.47014 0.97916 1.36752 0.86639 0.79146 0.78198 0.84625 1.19818 1.21059 1.21068 1.20621 0.97127 0.91976 0.92750 1.20975 0.94461 0.99244 0.98432 1.20987 0.93914 0.99528 1.00538 1.20819 0.98452 0.97572 1.00273 1.20988 0.95792 0.98450 0.99441 1.21084 0.92429 0.99380 1.00664 0.88658 0.89507 0.88547 0.90528 0.90379 0.91425 0.89239 0.90275 0.93063 0.86728 0.87541 0.87718 0.87553 0.86738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.60 10.24 36.01 0.37 -1.23 16 2 C 0.36 4.62 6.56 -29.03 -0.19 4.43 16 3 O -0.44 -7.31 17.30 -13.22 -0.23 -7.54 16 4 C 0.03 0.49 2.91 -27.88 -0.08 0.41 16 5 H 0.11 1.63 7.16 -51.93 -0.37 1.26 16 6 C -0.16 -1.87 9.52 37.16 0.35 -1.52 16 7 O -0.35 -6.46 9.46 -45.79 -0.43 -6.89 16 8 C 0.45 9.38 7.68 36.00 0.28 9.66 16 9 O -0.46 -10.97 14.20 -18.75 -0.27 -11.23 16 10 C -0.09 -1.87 5.06 -27.89 -0.14 -2.01 16 11 C 0.08 1.77 1.69 -92.93 -0.16 1.61 16 12 H 0.07 1.99 6.95 -51.93 -0.36 1.63 16 13 C -0.50 -13.16 6.38 -34.45 -0.22 -13.38 16 14 H 0.05 1.41 7.82 -52.49 -0.41 1.00 16 15 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 16 N -0.88 -25.19 12.85 55.43 0.71 -24.47 16 17 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 18 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 20 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 21 C -0.02 -0.53 4.77 -104.62 -0.50 -1.03 16 22 C -0.11 -2.28 8.86 -39.58 -0.35 -2.63 16 23 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 24 C -0.15 -2.64 10.05 -39.58 -0.40 -3.04 16 25 C -0.13 -2.35 10.05 -39.58 -0.40 -2.74 16 26 C -0.12 -2.44 9.67 -39.58 -0.38 -2.83 16 27 H 0.09 0.54 7.89 -51.93 -0.41 0.13 16 28 H 0.09 0.66 8.12 -51.93 -0.42 0.24 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.63 7.89 -51.93 -0.41 0.22 16 31 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.09 1.70 7.76 -51.93 -0.40 1.29 16 34 H 0.08 1.40 8.14 -51.92 -0.42 0.97 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.82 16 36 H 0.11 2.23 7.75 -52.49 -0.41 1.82 16 37 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 38 H 0.10 1.51 8.06 -52.49 -0.42 1.08 16 39 H 0.11 1.66 8.06 -52.48 -0.42 1.23 16 40 H 0.11 2.39 7.95 -52.49 -0.42 1.97 16 LS Contribution 347.95 15.07 5.24 5.24 Total: -1.00 -32.48 347.95 -8.01 -40.49 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -5.71 Total: 2.77 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: -2.31 Total: -15.01 kcal Atomic # 7 Polarization: -25.19 SS G_CDS: 0.71 Total: -24.47 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.93 Total: -25.66 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.48 -8.01 -40.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795993078.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.534 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.495 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds