Wall clock time and date at job start Tue Mar 31 2020 06:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20761 * 119.99844 * 2 1 4 4 C 1.50696 * 119.99966 * 180.02562 * 2 1 3 5 5 H 1.08992 * 109.47169 * 320.00064 * 4 2 1 6 6 C 1.53005 * 109.47233 * 80.00249 * 4 2 1 7 7 O 1.45204 * 109.46885 * 199.99814 * 4 2 1 8 8 C 1.34231 * 116.99758 * 150.00231 * 7 4 2 9 9 O 1.20831 * 119.99884 * 359.97438 * 8 7 4 10 10 C 1.50696 * 119.99779 * 180.02562 * 8 7 4 11 11 C 1.53007 * 109.46824 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46733 * 304.99386 * 11 10 8 13 13 C 1.50695 * 109.47223 * 64.99923 * 11 10 8 14 14 H 1.08001 * 119.99818 * 234.67474 * 13 11 10 15 15 C 1.37879 * 120.00157 * 54.67719 * 13 11 10 16 16 N 1.31516 * 119.99844 * 4.87811 * 15 13 11 17 17 Si 1.86794 * 119.99878 * 184.87120 * 15 13 11 18 18 H 1.48503 * 109.47273 * 90.00366 * 17 15 13 19 19 H 1.48501 * 109.47006 * 209.99977 * 17 15 13 20 20 H 1.48500 * 109.47521 * 330.00143 * 17 15 13 21 21 C 1.50705 * 109.46701 * 184.99989 * 11 10 8 22 22 C 1.38237 * 119.99743 * 151.48352 * 21 11 10 23 23 C 1.38232 * 119.99813 * 179.78387 * 22 21 11 24 24 C 1.38232 * 120.00310 * 0.44404 * 23 22 21 25 25 C 1.38237 * 119.99689 * 359.81033 * 24 23 22 26 26 C 1.38229 * 120.00079 * 331.75553 * 21 11 10 27 27 H 1.08997 * 109.47063 * 239.99624 * 1 2 3 28 28 H 1.09005 * 109.47474 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47228 * 119.99594 * 1 2 3 30 30 H 1.08999 * 109.46615 * 299.99965 * 6 4 2 31 31 H 1.08997 * 109.47093 * 59.99351 * 6 4 2 32 32 H 1.08995 * 109.47136 * 179.97438 * 6 4 2 33 33 H 1.08996 * 109.47651 * 60.00070 * 10 8 7 34 34 H 1.08998 * 109.47278 * 299.99811 * 10 8 7 35 35 H 0.96996 * 119.99719 * 180.02562 * 16 15 13 36 36 H 1.08000 * 119.99643 * 359.97438 * 22 21 11 37 37 H 1.08001 * 119.99692 * 180.27172 * 23 22 21 38 38 H 1.07998 * 120.00424 * 179.83510 * 24 23 22 39 39 H 1.08005 * 120.00205 * 179.97438 * 25 24 23 40 40 H 1.07997 * 120.00143 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.7604 -2.0136 0.6596 6 6 2.2986 -1.8714 -1.4215 7 8 3.6166 -1.0812 0.4677 8 6 4.2159 -2.0976 1.1076 9 8 3.6267 -3.1397 1.2714 10 6 5.6231 -1.9386 1.6227 11 6 6.0656 -3.2343 2.3058 12 1 5.3466 -3.5002 3.0807 13 6 6.1371 -4.3410 1.2855 14 1 5.5901 -5.2585 1.4449 15 6 6.9009 -4.1823 0.1487 16 7 7.6424 -3.1064 -0.0005 17 14 6.8827 -5.4956 -1.1796 18 1 5.8084 -5.1938 -2.1595 19 1 8.1950 -5.5152 -1.8743 20 1 6.6301 -6.8218 -0.5611 21 6 7.4239 -3.0356 2.9277 22 6 7.7868 -3.7667 4.0433 23 6 9.0344 -3.5878 4.6111 24 6 9.9156 -2.6712 4.0687 25 6 9.5507 -1.9363 2.9562 26 6 8.3047 -2.1184 2.3858 27 1 -0.3633 -0.5139 0.8899 28 1 -0.3634 1.0277 0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 1.2806 -2.0394 -1.7730 31 1 2.7986 -1.1628 -2.0817 32 1 2.8440 -2.8151 -1.4219 33 1 5.6570 -1.1191 2.3405 34 1 6.2922 -1.7204 0.7903 35 1 8.1795 -2.9946 -0.8004 36 1 7.0968 -4.4799 4.4695 37 1 9.3196 -4.1622 5.4801 38 1 10.8893 -2.5295 4.5139 39 1 10.2390 -1.2199 2.5327 40 1 8.0196 -1.5444 1.5166 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795993081.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:15 Heat of formation + Delta-G solvation = -100.764316 kcal Electronic energy + Delta-G solvation = -23285.928563 eV Core-core repulsion = 19837.995950 eV Total energy + Delta-G solvation = -3447.932613 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.18297 -38.98605 -38.19270 -35.88961 -34.26900 -32.36952 -31.15573 -29.86983 -29.58951 -28.54827 -26.16653 -24.44890 -22.77655 -21.53588 -20.54655 -19.52935 -19.27549 -17.13972 -16.66705 -16.18204 -15.82733 -15.50404 -15.04840 -14.93128 -14.64703 -14.16409 -13.87238 -13.63575 -13.27431 -12.96335 -12.72650 -12.49514 -12.25710 -12.19158 -12.14719 -11.77028 -11.60568 -11.50707 -11.21098 -10.97230 -10.88801 -10.52515 -10.32657 -10.23627 -10.00987 -9.65752 -9.41520 -9.33935 -9.14638 -8.54280 -7.82407 -7.48065 -6.04760 -4.16811 1.85603 2.47334 2.56037 3.11863 3.20922 3.25820 3.32872 3.37100 4.13182 4.36618 4.84502 4.94667 4.99883 5.10639 5.17306 5.19513 5.24453 5.45359 5.69729 5.80098 5.81082 5.87726 5.96467 6.00434 6.19924 6.30187 6.41105 6.47973 6.67616 6.74063 6.91811 7.10172 7.18949 7.24045 7.40531 7.44225 7.50741 7.67115 7.86750 8.04333 8.13344 8.25225 8.70091 8.83661 9.47483 10.89298 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016044 B = 0.005193 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.793698 B = 5390.978390 C = 6405.061429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.355 3.645 3 O -0.435 6.435 4 C 0.035 3.965 5 H 0.107 0.893 6 C -0.161 4.161 7 O -0.349 6.349 8 C 0.469 3.531 9 O -0.497 6.497 10 C -0.112 4.112 11 C 0.085 3.915 12 H 0.040 0.960 13 C -0.480 4.480 14 H 0.061 0.939 15 C 0.060 3.940 16 N -0.886 5.886 17 Si 0.893 3.107 18 H -0.282 1.282 19 H -0.287 1.287 20 H -0.274 1.274 21 C -0.028 4.028 22 C -0.130 4.130 23 C -0.141 4.141 24 C -0.152 4.152 25 C -0.141 4.141 26 C -0.069 4.069 27 H 0.095 0.905 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.067 0.933 34 H 0.143 0.857 35 H 0.264 0.736 36 H 0.106 0.894 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.239 4.450 0.813 9.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C 0.228 3.772 3 O -0.306 6.306 4 C -0.022 4.022 5 H 0.124 0.876 6 C -0.219 4.219 7 O -0.268 6.268 8 C 0.312 3.688 9 O -0.383 6.383 10 C -0.150 4.150 11 C 0.066 3.934 12 H 0.058 0.942 13 C -0.518 4.518 14 H 0.080 0.920 15 C -0.141 4.141 16 N -0.525 5.525 17 Si 0.721 3.279 18 H -0.208 1.208 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.029 4.029 22 C -0.148 4.148 23 C -0.160 4.160 24 C -0.171 4.171 25 C -0.160 4.160 26 C -0.087 4.087 27 H 0.113 0.887 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.160 0.840 35 H 0.074 0.926 36 H 0.124 0.876 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -7.992 4.756 0.706 9.327 hybrid contribution 0.090 -1.115 -0.938 1.460 sum -7.902 3.640 -0.232 8.703 Atomic orbital electron populations 1.22283 0.93123 1.05242 1.04883 1.24649 0.91859 0.89457 0.71239 1.90427 1.71946 1.34557 1.33639 1.22953 0.83792 0.97199 0.98246 0.87556 1.22061 1.03066 1.02842 0.93897 1.86745 1.27195 1.44001 1.68811 1.24436 0.89670 0.80797 0.73868 1.90561 1.65165 1.27928 1.54605 1.21820 0.88226 1.01019 1.03899 1.17705 0.89282 0.92041 0.94334 0.94167 1.20995 1.26895 1.01523 1.02364 0.92027 1.24936 0.94758 0.96029 0.98331 1.69660 1.27875 1.27201 1.27758 0.86551 0.77174 0.82281 0.81867 1.20801 1.21246 1.19908 1.20213 0.98443 0.92602 0.91594 1.20869 0.96328 1.00326 0.97308 1.20797 0.94849 0.99852 1.00459 1.20783 0.98778 0.99168 0.98331 1.21056 0.97500 1.00581 0.96839 1.21382 0.92438 0.97667 0.97260 0.88658 0.89531 0.88682 0.90765 0.91345 0.90175 0.91458 0.83999 0.92604 0.87603 0.88017 0.88215 0.87954 0.84202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.62 10.26 36.01 0.37 -1.25 16 2 C 0.35 4.78 6.53 -29.04 -0.19 4.59 16 3 O -0.43 -7.53 17.35 -12.82 -0.22 -7.76 16 4 C 0.03 0.53 2.91 -27.88 -0.08 0.45 16 5 H 0.11 1.54 7.16 -51.93 -0.37 1.17 16 6 C -0.16 -2.21 9.53 37.16 0.35 -1.86 16 7 O -0.35 -6.92 9.50 -45.68 -0.43 -7.35 16 8 C 0.47 10.21 7.68 36.00 0.28 10.48 16 9 O -0.50 -11.55 14.21 -18.75 -0.27 -11.81 16 10 C -0.11 -2.48 4.19 -27.88 -0.12 -2.59 16 11 C 0.09 2.02 1.97 -92.92 -0.18 1.83 16 12 H 0.04 0.95 7.91 -51.93 -0.41 0.54 16 13 C -0.48 -12.55 7.28 -34.44 -0.25 -12.80 16 14 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 15 C 0.06 1.55 5.12 -17.82 -0.09 1.46 16 16 N -0.89 -22.54 7.99 55.43 0.44 -22.10 16 17 Si 0.89 21.00 29.54 -169.99 -5.02 15.98 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 21 C -0.03 -0.63 4.69 -104.62 -0.49 -1.12 16 22 C -0.13 -2.74 9.71 -39.58 -0.38 -3.12 16 23 C -0.14 -2.69 10.05 -39.59 -0.40 -3.09 16 24 C -0.15 -2.85 10.05 -39.58 -0.40 -3.25 16 25 C -0.14 -2.81 10.05 -39.58 -0.40 -3.21 16 26 C -0.07 -1.52 7.45 -39.58 -0.30 -1.82 16 27 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.09 0.67 8.12 -51.93 -0.42 0.24 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 33 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 34 H 0.14 3.37 4.70 -51.93 -0.24 3.13 16 35 H 0.26 6.56 8.31 -40.82 -0.34 6.22 16 36 H 0.11 2.09 8.06 -52.49 -0.42 1.67 16 37 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 38 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 39 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 40 H 0.14 3.18 5.18 -52.49 -0.27 2.91 16 LS Contribution 337.61 15.07 5.09 5.09 Total: -1.00 -29.83 337.61 -8.18 -38.02 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.49 Total: 5.24 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -2.27 Total: -15.30 kcal Atomic # 7 Polarization: -22.54 SS G_CDS: 0.44 Total: -22.10 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.92 Total: -26.92 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.83 -8.18 -38.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795993081.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.749 kcal (2) G-P(sol) polarization free energy of solvation -29.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds