Wall clock time and date at job start Tue Mar 31 2020 06:26:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.20761 * 119.99844 * 2 1 4 4 C 1.50696 * 119.99966 * 180.02562 * 2 1 3 5 5 H 1.08992 * 109.47169 * 320.00064 * 4 2 1 6 6 C 1.53005 * 109.47233 * 80.00249 * 4 2 1 7 7 O 1.45204 * 109.46885 * 199.99814 * 4 2 1 8 8 C 1.34231 * 116.99758 * 150.00231 * 7 4 2 9 9 O 1.20831 * 119.99884 * 359.97438 * 8 7 4 10 10 C 1.50696 * 119.99779 * 180.02562 * 8 7 4 11 11 C 1.53007 * 109.46824 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.46733 * 304.99386 * 11 10 8 13 13 C 1.50695 * 109.47223 * 64.99923 * 11 10 8 14 14 H 1.08001 * 119.99818 * 234.67474 * 13 11 10 15 15 C 1.37879 * 120.00157 * 54.67719 * 13 11 10 16 16 N 1.31516 * 119.99844 * 4.87811 * 15 13 11 17 17 Si 1.86794 * 119.99878 * 184.87120 * 15 13 11 18 18 H 1.48503 * 109.47273 * 90.00366 * 17 15 13 19 19 H 1.48501 * 109.47006 * 209.99977 * 17 15 13 20 20 H 1.48500 * 109.47521 * 330.00143 * 17 15 13 21 21 C 1.50705 * 109.46701 * 184.99989 * 11 10 8 22 22 C 1.38237 * 119.99743 * 151.48352 * 21 11 10 23 23 C 1.38232 * 119.99813 * 179.78387 * 22 21 11 24 24 C 1.38232 * 120.00310 * 0.44404 * 23 22 21 25 25 C 1.38237 * 119.99689 * 359.81033 * 24 23 22 26 26 C 1.38229 * 120.00079 * 331.75553 * 21 11 10 27 27 H 1.08997 * 109.47063 * 239.99624 * 1 2 3 28 28 H 1.09005 * 109.47474 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47228 * 119.99594 * 1 2 3 30 30 H 1.08999 * 109.46615 * 299.99965 * 6 4 2 31 31 H 1.08997 * 109.47093 * 59.99351 * 6 4 2 32 32 H 1.08995 * 109.47136 * 179.97438 * 6 4 2 33 33 H 1.08996 * 109.47651 * 60.00070 * 10 8 7 34 34 H 1.08998 * 109.47278 * 299.99811 * 10 8 7 35 35 H 0.96996 * 119.99719 * 180.02562 * 16 15 13 36 36 H 1.08000 * 119.99643 * 359.97438 * 22 21 11 37 37 H 1.08001 * 119.99692 * 180.27172 * 23 22 21 38 38 H 1.07998 * 120.00424 * 179.83510 * 24 23 22 39 39 H 1.08005 * 120.00205 * 179.97438 * 25 24 23 40 40 H 1.07997 * 120.00143 * 359.97438 * 26 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 -0.0006 5 1 1.7604 -2.0136 0.6596 6 6 2.2986 -1.8714 -1.4215 7 8 3.6166 -1.0812 0.4677 8 6 4.2159 -2.0976 1.1076 9 8 3.6267 -3.1397 1.2714 10 6 5.6231 -1.9386 1.6227 11 6 6.0656 -3.2343 2.3058 12 1 5.3466 -3.5002 3.0807 13 6 6.1371 -4.3410 1.2855 14 1 5.5901 -5.2585 1.4449 15 6 6.9009 -4.1823 0.1487 16 7 7.6424 -3.1064 -0.0005 17 14 6.8827 -5.4956 -1.1796 18 1 5.8084 -5.1938 -2.1595 19 1 8.1950 -5.5152 -1.8743 20 1 6.6301 -6.8218 -0.5611 21 6 7.4239 -3.0356 2.9277 22 6 7.7868 -3.7667 4.0433 23 6 9.0344 -3.5878 4.6111 24 6 9.9156 -2.6712 4.0687 25 6 9.5507 -1.9363 2.9562 26 6 8.3047 -2.1184 2.3858 27 1 -0.3633 -0.5139 0.8899 28 1 -0.3634 1.0277 0.0005 29 1 -0.3633 -0.5138 -0.8900 30 1 1.2806 -2.0394 -1.7730 31 1 2.7986 -1.1628 -2.0817 32 1 2.8440 -2.8151 -1.4219 33 1 5.6570 -1.1191 2.3405 34 1 6.2922 -1.7204 0.7903 35 1 8.1795 -2.9946 -0.8004 36 1 7.0968 -4.4799 4.4695 37 1 9.3196 -4.1622 5.4801 38 1 10.8893 -2.5295 4.5139 39 1 10.2390 -1.2199 2.5327 40 1 8.0196 -1.5444 1.5166 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795993081.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:26:15 Heat of formation + Delta-G solvation = -114.682376 kcal Electronic energy + Delta-G solvation = -23286.532095 eV Core-core repulsion = 19837.995950 eV Total energy + Delta-G solvation = -3448.536145 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.67400 -40.36561 -39.76161 -37.48498 -36.06493 -33.60536 -33.00308 -31.44218 -30.57191 -30.08360 -28.01008 -25.74746 -24.45269 -23.11510 -22.10472 -20.99338 -20.70947 -18.77433 -18.30314 -17.78843 -17.28349 -17.05104 -16.73497 -16.24121 -15.95595 -15.68456 -15.45419 -15.13551 -14.85459 -14.35596 -14.03141 -13.79990 -13.59581 -13.49478 -13.33874 -13.21459 -13.10209 -13.01267 -12.85178 -12.73088 -12.54377 -12.33197 -11.92602 -11.81736 -11.73300 -11.30938 -11.13584 -11.01562 -10.63644 -10.47649 -9.41375 -9.14640 -7.98865 -6.17687 0.78448 0.87339 0.98313 1.35710 1.39131 1.46640 1.48379 1.75448 2.41936 2.98282 3.15299 3.35652 3.82100 3.90803 4.02211 4.12639 4.29912 4.40648 4.47687 4.54564 4.58351 4.59378 4.64383 4.67041 4.76953 4.80662 5.00169 5.03102 5.11435 5.15064 5.22992 5.46291 5.52796 5.58658 5.65984 5.84086 5.92750 6.07173 6.27793 6.37835 6.38533 6.55704 6.78923 7.04668 7.46527 8.90291 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.016044 B = 0.005193 C = 0.004370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.793698 B = 5390.978390 C = 6405.061429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.363 3.637 3 O -0.482 6.482 4 C 0.016 3.984 5 H 0.116 0.884 6 C -0.158 4.158 7 O -0.363 6.363 8 C 0.471 3.529 9 O -0.518 6.518 10 C -0.108 4.108 11 C 0.087 3.913 12 H 0.027 0.973 13 C -0.497 4.497 14 H 0.039 0.961 15 C 0.030 3.970 16 N -0.887 5.887 17 Si 0.933 3.067 18 H -0.282 1.282 19 H -0.281 1.281 20 H -0.279 1.279 21 C -0.052 4.052 22 C -0.147 4.147 23 C -0.139 4.139 24 C -0.147 4.147 25 C -0.147 4.147 26 C -0.085 4.085 27 H 0.117 0.883 28 H 0.094 0.906 29 H 0.126 0.874 30 H 0.122 0.878 31 H 0.062 0.938 32 H 0.051 0.949 33 H 0.082 0.918 34 H 0.128 0.872 35 H 0.263 0.737 36 H 0.109 0.891 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.124 0.876 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.531 4.653 1.041 9.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C 0.240 3.760 3 O -0.356 6.356 4 C -0.039 4.039 5 H 0.134 0.866 6 C -0.215 4.215 7 O -0.281 6.281 8 C 0.316 3.684 9 O -0.406 6.406 10 C -0.146 4.146 11 C 0.068 3.932 12 H 0.046 0.954 13 C -0.535 4.535 14 H 0.057 0.943 15 C -0.170 4.170 16 N -0.526 5.526 17 Si 0.761 3.239 18 H -0.208 1.208 19 H -0.207 1.207 20 H -0.204 1.204 21 C -0.052 4.052 22 C -0.165 4.165 23 C -0.156 4.156 24 C -0.165 4.165 25 C -0.165 4.165 26 C -0.103 4.103 27 H 0.136 0.864 28 H 0.113 0.887 29 H 0.145 0.855 30 H 0.140 0.860 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.100 0.900 34 H 0.145 0.855 35 H 0.073 0.927 36 H 0.127 0.873 37 H 0.153 0.847 38 H 0.154 0.846 39 H 0.142 0.858 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -8.294 4.968 0.931 9.713 hybrid contribution 0.155 -1.163 -0.976 1.526 sum -8.139 3.805 -0.044 8.985 Atomic orbital electron populations 1.22326 0.88003 1.06692 1.07325 1.25234 0.94117 0.87495 0.69195 1.90425 1.73320 1.35607 1.36292 1.23570 0.81712 0.99410 0.99225 0.86643 1.22073 1.05575 1.00935 0.92883 1.86695 1.29811 1.43198 1.68370 1.24278 0.89620 0.80783 0.73755 1.90533 1.65773 1.28711 1.55574 1.21671 0.88471 1.00859 1.03570 1.17607 0.90028 0.91945 0.93578 0.95410 1.20999 1.27207 1.01474 1.03816 0.94296 1.25357 0.94783 0.97447 0.99365 1.69779 1.27647 1.27452 1.27714 0.85929 0.77189 0.80560 0.80245 1.20770 1.20676 1.20371 1.20196 0.98034 0.94069 0.92907 1.21070 0.97696 1.00464 0.97282 1.21178 0.93752 0.99714 1.01004 1.21210 1.00083 0.97816 0.97389 1.21350 0.96880 1.01102 0.97216 1.21314 0.93607 0.98008 0.97404 0.86446 0.88685 0.85545 0.85998 0.91918 0.93023 0.89957 0.85501 0.92736 0.87310 0.84722 0.84556 0.85793 0.85687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.41 10.26 71.24 0.73 -1.68 16 2 C 0.36 9.31 6.53 29.10 0.19 9.50 16 3 O -0.48 -16.68 17.35 16.54 0.29 -16.39 16 4 C 0.02 0.50 2.91 29.85 0.09 0.59 16 5 H 0.12 3.28 7.16 -2.39 -0.02 3.26 16 6 C -0.16 -4.20 9.53 71.98 0.69 -3.51 16 7 O -0.36 -14.76 9.50 -45.29 -0.43 -15.19 16 8 C 0.47 21.26 7.68 71.23 0.55 21.80 16 9 O -0.52 -24.91 14.21 21.95 0.31 -24.60 16 10 C -0.11 -4.97 4.19 29.85 0.12 -4.84 16 11 C 0.09 4.28 1.97 -12.28 -0.02 4.26 16 12 H 0.03 1.37 7.91 -2.39 -0.02 1.35 16 13 C -0.50 -26.90 7.28 25.60 0.19 -26.72 16 14 H 0.04 2.22 7.82 -2.91 -0.02 2.19 16 15 C 0.03 1.60 5.12 84.65 0.43 2.04 16 16 N -0.89 -46.00 7.99 21.45 0.17 -45.83 16 17 Si 0.93 43.57 29.54 68.60 2.03 45.59 16 18 H -0.28 -13.03 7.11 99.48 0.71 -12.33 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 20 H -0.28 -13.10 7.11 99.48 0.71 -12.40 16 21 C -0.05 -2.38 4.69 -19.87 -0.09 -2.47 16 22 C -0.15 -6.13 9.71 22.27 0.22 -5.92 16 23 C -0.14 -4.93 10.05 22.27 0.22 -4.71 16 24 C -0.15 -5.05 10.05 22.27 0.22 -4.83 16 25 C -0.15 -5.62 10.05 22.27 0.22 -5.39 16 26 C -0.08 -3.75 7.45 22.27 0.17 -3.59 16 27 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.09 1.15 8.12 -2.38 -0.02 1.13 16 29 H 0.13 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.12 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.05 1.67 8.14 -2.39 -0.02 1.66 16 33 H 0.08 3.43 8.14 -2.39 -0.02 3.41 16 34 H 0.13 6.29 4.70 -2.39 -0.01 6.28 16 35 H 0.26 13.23 8.31 -92.71 -0.77 12.46 16 36 H 0.11 4.34 8.06 -2.91 -0.02 4.32 16 37 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 38 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 39 H 0.12 4.09 8.06 -2.91 -0.02 4.07 16 40 H 0.13 5.84 5.18 -2.91 -0.02 5.82 16 Total: -1.00 -66.92 337.61 7.32 -59.60 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 1.04 Total: 22.29 kcal Atomic # 6 Polarization: -29.39 SS G_CDS: 3.92 Total: -25.47 kcal Atomic # 7 Polarization: -46.00 SS G_CDS: 0.17 Total: -45.83 kcal Atomic # 8 Polarization: -56.35 SS G_CDS: 0.17 Total: -56.19 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Total: -66.92 7.32 -59.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795993081.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.082 kcal (2) G-P(sol) polarization free energy of solvation -66.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds