Wall clock time and date at job start Tue Mar 31 2020 06:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 117.00024 * 2 1 4 4 C 1.38751 * 120.05484 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94677 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05183 * 359.97438 * 5 4 3 7 7 C 1.38241 * 120.11180 * 0.30261 * 6 5 4 8 8 C 1.50696 * 119.97256 * 179.72502 * 7 6 5 9 9 C 1.50706 * 115.55259 * 214.41400 * 8 7 6 10 10 O 1.20818 * 119.99989 * 145.57819 * 9 8 7 11 11 O 1.34224 * 119.99653 * 325.57829 * 9 8 7 12 12 C 1.45192 * 117.00081 * 179.97438 * 11 9 8 13 13 C 1.53008 * 109.47344 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.46880 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00299 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99690 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99667 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00067 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47097 * 59.99913 * 18 16 14 20 20 H 1.48501 * 109.47354 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47406 * 300.00105 * 18 16 14 22 22 C 1.53002 * 117.50252 * 68.73853 * 8 7 6 23 23 C 1.53005 * 117.49908 * 0.07867 * 8 7 6 24 24 C 1.38173 * 120.05599 * 359.44059 * 7 6 5 25 25 H 1.08999 * 109.46865 * 299.99376 * 1 2 3 26 26 H 1.08999 * 109.47045 * 59.99888 * 1 2 3 27 27 H 1.08997 * 109.46735 * 180.02562 * 1 2 3 28 28 H 1.08007 * 120.02525 * 359.95530 * 4 3 2 29 29 H 1.07998 * 119.97614 * 180.02562 * 5 4 3 30 30 H 1.08002 * 119.93997 * 180.02562 * 6 5 4 31 31 H 1.08999 * 109.47321 * 299.99829 * 12 11 9 32 32 H 1.09000 * 109.47596 * 60.00133 * 12 11 9 33 33 H 1.08999 * 109.46676 * 300.00106 * 13 12 11 34 34 H 1.08995 * 109.46812 * 60.00246 * 13 12 11 35 35 H 0.97003 * 119.99791 * 180.02562 * 17 16 14 36 36 H 1.09002 * 117.49551 * 0.02562 * 22 8 7 37 37 H 1.08994 * 117.49789 * 145.02156 * 22 8 7 38 38 H 1.08998 * 117.50112 * 214.98206 * 23 8 7 39 39 H 1.09001 * 117.49775 * 359.97438 * 23 8 7 40 40 H 1.08001 * 120.02655 * 180.30261 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3019 3.6758 0.0016 7 6 4.0559 2.5172 -0.0047 8 6 5.5607 2.5982 -0.0104 9 6 6.2671 1.5154 -0.7847 10 8 7.2923 1.7645 -1.3736 11 8 5.7574 0.2742 -0.8201 12 6 6.4905 -0.7179 -1.5858 13 6 5.7617 -2.0611 -1.5104 14 6 6.5231 -3.0910 -2.3047 15 1 7.4353 -2.8150 -2.8127 16 6 6.0545 -4.3854 -2.3835 17 7 4.9429 -4.7210 -1.7661 18 14 6.9978 -5.6617 -3.3685 19 1 8.3649 -5.8087 -2.8076 20 1 6.2905 -6.9654 -3.2953 21 1 7.0883 -5.2261 -4.7853 22 6 6.2447 3.1240 1.2532 23 6 6.1932 3.9914 -0.0069 24 6 3.4311 1.2848 0.0001 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2128 2.3203 0.0002 29 1 1.3340 4.5114 0.0019 30 1 3.7922 4.6381 0.0024 31 1 6.5561 -0.3985 -2.6259 32 1 7.4943 -0.8253 -1.1747 33 1 5.6957 -2.3808 -0.4704 34 1 4.7582 -1.9535 -1.9219 35 1 4.6134 -5.6317 -1.8212 36 1 5.6063 3.4108 2.0888 37 1 7.2057 2.6869 1.5243 38 1 7.1203 4.1247 -0.5644 39 1 5.5208 4.8494 -0.0010 40 1 4.0207 0.3799 0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000797206484.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:04 Heat of formation + Delta-G solvation = -75.153454 kcal Electronic energy + Delta-G solvation = -22822.741753 eV Core-core repulsion = 19375.919711 eV Total energy + Delta-G solvation = -3446.822043 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.72870 -39.72958 -38.09013 -36.61393 -35.53611 -33.31240 -31.12501 -30.21757 -29.84071 -27.35267 -25.81429 -24.26464 -23.04139 -22.43137 -21.68459 -20.84755 -19.66618 -18.22608 -16.85183 -16.55798 -16.18466 -15.94305 -15.87333 -15.66777 -15.59565 -14.82045 -14.51506 -13.91611 -13.61523 -13.26408 -13.07735 -12.83492 -12.74850 -12.32818 -11.98109 -11.87355 -11.48510 -11.32621 -11.19449 -11.12159 -10.84633 -10.74700 -10.72860 -10.57352 -10.49043 -10.23077 -9.61722 -9.58282 -9.26552 -8.69136 -8.40255 -8.12990 -6.06135 -4.10647 1.25069 1.50038 2.42770 3.05090 3.32306 3.34508 3.36146 3.39714 3.59376 3.90463 4.38493 4.41531 4.57307 4.77846 4.82115 4.92613 5.05193 5.13949 5.15931 5.18138 5.30001 5.46805 5.50960 5.55509 5.67104 5.69012 5.71873 5.94968 6.10686 6.12767 6.14838 6.36910 6.45302 6.62978 6.69983 6.77510 7.02237 7.53063 7.59967 7.67649 7.90345 8.20844 8.29469 8.94504 9.53264 11.05066 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.004673 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.203724 B = 5990.918956 C = 7780.246517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.307 6.307 3 C 0.132 3.868 4 C -0.212 4.212 5 C -0.085 4.085 6 C -0.156 4.156 7 C -0.013 4.013 8 C -0.102 4.102 9 C 0.496 3.504 10 O -0.513 6.513 11 O -0.345 6.345 12 C 0.072 3.928 13 C 0.026 3.974 14 C -0.527 4.527 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.888 5.888 18 Si 0.899 3.101 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.276 1.276 22 C -0.135 4.135 23 C -0.140 4.140 24 C -0.132 4.132 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.101 0.899 28 H 0.126 0.874 29 H 0.123 0.877 30 H 0.124 0.876 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.028 0.972 34 H 0.029 0.971 35 H 0.263 0.737 36 H 0.111 0.889 37 H 0.106 0.894 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.637 17.802 6.805 20.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.220 6.220 3 C 0.086 3.914 4 C -0.231 4.231 5 C -0.103 4.103 6 C -0.174 4.174 7 C -0.014 4.014 8 C -0.104 4.104 9 C 0.339 3.661 10 O -0.403 6.403 11 O -0.261 6.261 12 C -0.001 4.001 13 C -0.011 4.011 14 C -0.565 4.565 15 H 0.076 0.924 16 C -0.140 4.140 17 N -0.526 5.526 18 Si 0.726 3.274 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.172 4.172 23 C -0.176 4.176 24 C -0.150 4.150 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.119 0.881 28 H 0.143 0.857 29 H 0.141 0.859 30 H 0.142 0.858 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.047 0.953 34 H 0.048 0.952 35 H 0.073 0.927 36 H 0.129 0.871 37 H 0.125 0.875 38 H 0.132 0.868 39 H 0.130 0.870 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -7.379 17.455 6.643 20.081 hybrid contribution 0.202 -0.733 -0.706 1.038 sum -7.178 16.722 5.936 19.141 Atomic orbital electron populations 1.23050 0.78726 1.04093 1.00826 1.86215 1.21016 1.26467 1.88259 1.19032 0.92266 0.84279 0.95791 1.21252 0.99911 0.92506 1.09402 1.20778 0.94173 0.96855 0.98474 1.20850 0.93723 0.97604 1.05211 1.18455 0.90884 0.92916 0.99106 1.19685 0.91579 0.94982 1.04105 1.22060 0.82544 0.83294 0.78186 1.90618 1.24249 1.82708 1.42720 1.86519 1.53367 1.18931 1.67314 1.23712 0.95491 0.87375 0.93481 1.19163 0.96440 0.86891 0.98640 1.20936 1.09409 0.94153 1.32034 0.92381 1.24969 0.95040 0.98418 0.95619 1.69973 1.20863 1.19230 1.42569 0.86553 0.79918 0.80388 0.80548 1.20097 1.21134 1.20102 1.23187 1.01902 1.01231 0.90903 1.23247 1.02952 0.91094 1.00341 1.20916 0.91792 0.99526 1.02726 0.92959 0.92839 0.88103 0.85652 0.85874 0.85782 0.92310 0.92290 0.95330 0.95221 0.92705 0.87061 0.87519 0.86793 0.87046 0.82195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 9.81 101.05 0.99 1.29 16 2 O -0.31 -4.88 10.50 -19.44 -0.20 -5.08 16 3 C 0.13 2.02 6.69 -39.22 -0.26 1.75 16 4 C -0.21 -2.57 9.04 -39.43 -0.36 -2.92 16 5 C -0.08 -0.92 10.04 -39.60 -0.40 -1.31 16 6 C -0.16 -1.80 9.39 -39.56 -0.37 -2.17 16 7 C -0.01 -0.19 5.44 -104.65 -0.57 -0.76 16 8 C -0.10 -1.46 2.50 -156.81 -0.39 -1.85 16 9 C 0.50 9.22 7.46 36.01 0.27 9.48 16 10 O -0.51 -10.48 16.01 -18.74 -0.30 -10.78 16 11 O -0.35 -7.15 6.91 -39.24 -0.27 -7.43 16 12 C 0.07 1.64 5.40 37.16 0.20 1.84 16 13 C 0.03 0.69 5.35 -27.88 -0.15 0.54 16 14 C -0.53 -15.06 9.11 -34.44 -0.31 -15.37 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 17 N -0.89 -26.62 13.29 55.43 0.74 -25.88 16 18 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 19 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C -0.14 -1.47 9.94 -26.69 -0.27 -1.74 16 23 C -0.14 -1.50 9.38 -26.69 -0.25 -1.75 16 24 C -0.13 -2.19 9.01 -39.43 -0.36 -2.54 16 25 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 26 H 0.05 0.49 7.66 -51.93 -0.40 0.10 16 27 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.13 1.20 6.30 -52.48 -0.33 0.87 16 29 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 30 H 0.12 1.11 5.92 -52.49 -0.31 0.80 16 31 H 0.06 1.34 8.13 -51.93 -0.42 0.92 16 32 H 0.06 1.33 8.13 -51.93 -0.42 0.91 16 33 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.11 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.11 1.30 7.67 -51.93 -0.40 0.90 16 39 H 0.11 0.90 6.07 -51.93 -0.32 0.59 16 40 H 0.16 3.07 5.32 -52.49 -0.28 2.79 16 LS Contribution 339.27 15.07 5.11 5.11 Total: -1.00 -32.92 339.27 -7.62 -40.54 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -5.35 Total: 0.72 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: -2.32 Total: -13.83 kcal Atomic # 7 Polarization: -26.62 SS G_CDS: 0.74 Total: -25.88 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.78 Total: -23.29 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.92 -7.62 -40.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797206484.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.615 kcal (2) G-P(sol) polarization free energy of solvation -32.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds