Wall clock time and date at job start Tue Mar 31 2020 06:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 117.00024 * 2 1 4 4 C 1.38751 * 120.05484 * 0.02562 * 3 2 1 5 5 C 1.38122 * 119.94677 * 179.97438 * 4 3 2 6 6 C 1.38291 * 120.05183 * 359.97438 * 5 4 3 7 7 C 1.38241 * 120.11180 * 0.30261 * 6 5 4 8 8 C 1.50696 * 119.97256 * 179.72502 * 7 6 5 9 9 C 1.50706 * 115.55259 * 214.41400 * 8 7 6 10 10 O 1.20818 * 119.99989 * 145.57819 * 9 8 7 11 11 O 1.34224 * 119.99653 * 325.57829 * 9 8 7 12 12 C 1.45192 * 117.00081 * 179.97438 * 11 9 8 13 13 C 1.53008 * 109.47344 * 180.02562 * 12 11 9 14 14 C 1.50701 * 109.46880 * 180.02562 * 13 12 11 15 15 H 1.07998 * 120.00299 * 359.97438 * 14 13 12 16 16 C 1.37883 * 119.99690 * 180.02562 * 14 13 12 17 17 N 1.31513 * 119.99667 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00067 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47097 * 59.99913 * 18 16 14 20 20 H 1.48501 * 109.47354 * 179.97438 * 18 16 14 21 21 H 1.48501 * 109.47406 * 300.00105 * 18 16 14 22 22 C 1.53002 * 117.50252 * 68.73853 * 8 7 6 23 23 C 1.53005 * 117.49908 * 0.07867 * 8 7 6 24 24 C 1.38173 * 120.05599 * 359.44059 * 7 6 5 25 25 H 1.08999 * 109.46865 * 299.99376 * 1 2 3 26 26 H 1.08999 * 109.47045 * 59.99888 * 1 2 3 27 27 H 1.08997 * 109.46735 * 180.02562 * 1 2 3 28 28 H 1.08007 * 120.02525 * 359.95530 * 4 3 2 29 29 H 1.07998 * 119.97614 * 180.02562 * 5 4 3 30 30 H 1.08002 * 119.93997 * 180.02562 * 6 5 4 31 31 H 1.08999 * 109.47321 * 299.99829 * 12 11 9 32 32 H 1.09000 * 109.47596 * 60.00133 * 12 11 9 33 33 H 1.08999 * 109.46676 * 300.00106 * 13 12 11 34 34 H 1.08995 * 109.46812 * 60.00246 * 13 12 11 35 35 H 0.97003 * 119.99791 * 180.02562 * 17 16 14 36 36 H 1.09002 * 117.49551 * 0.02562 * 22 8 7 37 37 H 1.08994 * 117.49789 * 145.02156 * 22 8 7 38 38 H 1.08998 * 117.50112 * 214.98206 * 23 8 7 39 39 H 1.09001 * 117.49775 * 359.97438 * 23 8 7 40 40 H 1.08001 * 120.02655 * 180.30261 * 24 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3753 0.0005 5 6 1.9208 3.6048 0.0011 6 6 3.3019 3.6758 0.0016 7 6 4.0559 2.5172 -0.0047 8 6 5.5607 2.5982 -0.0104 9 6 6.2671 1.5154 -0.7847 10 8 7.2923 1.7645 -1.3736 11 8 5.7574 0.2742 -0.8201 12 6 6.4905 -0.7179 -1.5858 13 6 5.7617 -2.0611 -1.5104 14 6 6.5231 -3.0910 -2.3047 15 1 7.4353 -2.8150 -2.8127 16 6 6.0545 -4.3854 -2.3835 17 7 4.9429 -4.7210 -1.7661 18 14 6.9978 -5.6617 -3.3685 19 1 8.3649 -5.8087 -2.8076 20 1 6.2905 -6.9654 -3.2953 21 1 7.0883 -5.2261 -4.7853 22 6 6.2447 3.1240 1.2532 23 6 6.1932 3.9914 -0.0069 24 6 3.4311 1.2848 0.0001 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 0.2128 2.3203 0.0002 29 1 1.3340 4.5114 0.0019 30 1 3.7922 4.6381 0.0024 31 1 6.5561 -0.3985 -2.6259 32 1 7.4943 -0.8253 -1.1747 33 1 5.6957 -2.3808 -0.4704 34 1 4.7582 -1.9535 -1.9219 35 1 4.6134 -5.6317 -1.8212 36 1 5.6063 3.4108 2.0888 37 1 7.2057 2.6869 1.5243 38 1 7.1203 4.1247 -0.5644 39 1 5.5208 4.8494 -0.0010 40 1 4.0207 0.3799 0.0001 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000797206484.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:36:04 Heat of formation + Delta-G solvation = -93.981104 kcal Electronic energy + Delta-G solvation = -22823.558182 eV Core-core repulsion = 19375.919711 eV Total energy + Delta-G solvation = -3447.638471 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.01661 -40.90445 -39.25225 -37.99233 -36.77426 -35.48723 -32.50531 -31.92518 -30.80215 -28.29647 -27.51770 -25.85650 -24.01877 -23.47975 -22.91274 -22.67757 -20.94804 -19.47244 -18.55640 -17.85843 -17.76947 -17.54402 -17.01204 -16.80067 -16.61711 -16.51789 -15.81877 -15.10068 -15.03738 -14.62753 -14.40036 -14.18910 -14.03043 -13.71393 -13.25376 -13.20831 -12.81555 -12.76843 -12.62166 -12.60579 -12.36002 -12.19253 -11.93850 -11.86264 -11.64441 -11.56526 -11.50202 -11.46651 -11.32632 -10.63739 -9.69904 -9.13009 -8.28446 -6.43228 0.26751 0.51378 1.00993 1.38009 1.42867 1.50247 1.64411 2.37883 2.39989 2.60496 2.91854 3.05050 3.39414 3.55346 3.63282 3.89941 3.97263 4.15484 4.17252 4.19402 4.27462 4.31918 4.38917 4.60183 4.60781 4.66631 4.70509 4.71246 4.75924 4.89693 5.10796 5.13481 5.22134 5.40571 5.40910 5.45983 5.50413 5.65519 5.70031 5.86181 6.02777 6.54009 6.64804 6.70628 7.26592 8.84001 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.013884 B = 0.004673 C = 0.003598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2016.203724 B = 5990.918956 C = 7780.246517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.350 6.350 3 C 0.108 3.892 4 C -0.209 4.209 5 C -0.073 4.073 6 C -0.149 4.149 7 C -0.018 4.018 8 C -0.133 4.133 9 C 0.489 3.511 10 O -0.538 6.538 11 O -0.353 6.353 12 C 0.086 3.914 13 C 0.036 3.964 14 C -0.554 4.554 15 H 0.065 0.935 16 C 0.007 3.993 17 N -0.926 5.926 18 Si 0.976 3.024 19 H -0.264 1.264 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.121 4.121 23 C -0.114 4.114 24 C -0.175 4.175 25 H 0.075 0.925 26 H 0.067 0.933 27 H 0.105 0.895 28 H 0.153 0.847 29 H 0.167 0.833 30 H 0.161 0.839 31 H 0.056 0.944 32 H 0.061 0.939 33 H 0.003 0.997 34 H 0.000 1.000 35 H 0.268 0.732 36 H 0.138 0.862 37 H 0.102 0.898 38 H 0.107 0.893 39 H 0.150 0.850 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.101 20.620 6.907 23.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.265 6.265 3 C 0.063 3.937 4 C -0.227 4.227 5 C -0.091 4.091 6 C -0.166 4.166 7 C -0.018 4.018 8 C -0.134 4.134 9 C 0.334 3.666 10 O -0.428 6.428 11 O -0.269 6.269 12 C 0.013 3.987 13 C -0.001 4.001 14 C -0.591 4.591 15 H 0.084 0.916 16 C -0.192 4.192 17 N -0.565 5.565 18 Si 0.799 3.201 19 H -0.189 1.189 20 H -0.203 1.203 21 H -0.190 1.190 22 C -0.157 4.157 23 C -0.150 4.150 24 C -0.193 4.193 25 H 0.093 0.907 26 H 0.086 0.914 27 H 0.124 0.876 28 H 0.170 0.830 29 H 0.184 0.816 30 H 0.179 0.821 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.021 0.979 34 H 0.018 0.982 35 H 0.077 0.923 36 H 0.156 0.844 37 H 0.121 0.879 38 H 0.125 0.875 39 H 0.167 0.833 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.847 20.296 6.754 22.784 hybrid contribution 0.281 -1.541 -0.685 1.710 sum -7.566 18.755 6.069 21.115 Atomic orbital electron populations 1.23321 0.76397 1.05140 1.02559 1.86149 1.23735 1.27842 1.88728 1.19262 0.92136 0.85238 0.97047 1.21577 1.01142 0.91787 1.08208 1.21317 0.94247 0.97705 0.95815 1.21233 0.94122 0.97735 1.03536 1.18536 0.90892 0.93012 0.99389 1.19816 0.91704 0.95288 1.06575 1.23085 0.82495 0.83037 0.77999 1.90585 1.25448 1.82866 1.43943 1.86606 1.53285 1.20028 1.67014 1.23206 0.94974 0.86689 0.93798 1.18918 0.95344 0.89178 0.96630 1.21332 1.09983 0.95126 1.32672 0.91650 1.26005 0.95932 1.00772 0.96533 1.70116 1.22512 1.20057 1.43777 0.85345 0.78605 0.77177 0.78984 1.18903 1.20276 1.19023 1.23397 1.01571 0.99779 0.90981 1.23467 1.02666 0.89904 0.98963 1.20807 0.92699 0.99246 1.06557 0.90690 0.91430 0.87618 0.82992 0.81561 0.82128 0.92520 0.92048 0.97864 0.98154 0.92306 0.84359 0.87940 0.87497 0.83263 0.86490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.42 9.81 113.37 1.11 1.54 16 2 O -0.35 -11.93 10.50 -92.48 -0.97 -12.91 16 3 C 0.11 3.43 6.69 22.50 0.15 3.58 16 4 C -0.21 -4.61 9.04 22.36 0.20 -4.41 16 5 C -0.07 -1.28 10.04 22.25 0.22 -1.05 16 6 C -0.15 -2.88 9.39 22.28 0.21 -2.67 16 7 C -0.02 -0.50 5.44 -19.88 -0.11 -0.61 16 8 C -0.13 -3.69 2.50 -53.67 -0.13 -3.83 16 9 C 0.49 18.91 7.46 71.24 0.53 19.44 16 10 O -0.54 -22.57 16.01 21.99 0.35 -22.22 16 11 O -0.35 -15.85 6.91 -51.36 -0.35 -16.21 16 12 C 0.09 4.23 5.40 71.98 0.39 4.62 16 13 C 0.04 2.10 5.35 29.85 0.16 2.26 16 14 C -0.55 -32.87 9.11 25.60 0.23 -32.64 16 15 H 0.07 3.70 7.74 -2.91 -0.02 3.67 16 16 C 0.01 0.40 5.46 84.66 0.46 0.86 16 17 N -0.93 -57.51 13.29 21.45 0.28 -57.23 16 18 Si 0.98 44.92 29.54 68.60 2.03 46.94 16 19 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 21 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 22 C -0.12 -2.36 9.94 30.62 0.30 -2.06 16 23 C -0.11 -2.09 9.38 30.62 0.29 -1.80 16 24 C -0.17 -6.19 9.01 22.37 0.20 -5.98 16 25 H 0.07 1.21 7.66 -2.39 -0.02 1.19 16 26 H 0.07 1.20 7.66 -2.39 -0.02 1.19 16 27 H 0.11 2.05 8.14 -2.39 -0.02 2.03 16 28 H 0.15 2.43 6.30 -2.91 -0.02 2.41 16 29 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 30 H 0.16 1.88 5.92 -2.91 -0.02 1.86 16 31 H 0.06 2.76 8.13 -2.39 -0.02 2.74 16 32 H 0.06 2.93 8.13 -2.39 -0.02 2.91 16 33 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 34 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 35 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 36 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 37 H 0.10 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.11 2.18 7.67 -2.39 -0.02 2.16 16 39 H 0.15 1.58 6.07 -2.39 -0.01 1.56 16 40 H 0.12 5.08 5.32 -2.91 -0.02 5.06 16 Total: -1.00 -77.40 339.27 6.61 -70.79 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: 1.05 Total: 13.60 kcal Atomic # 6 Polarization: -26.99 SS G_CDS: 4.22 Total: -22.76 kcal Atomic # 7 Polarization: -57.51 SS G_CDS: 0.28 Total: -57.23 kcal Atomic # 8 Polarization: -50.36 SS G_CDS: -0.97 Total: -51.33 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.94 kcal Total: -77.40 6.61 -70.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000797206484.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.195 kcal (2) G-P(sol) polarization free energy of solvation -77.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.610 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds