Wall clock time and date at job start Tue Mar 31 2020 05:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47170 * 2 1 4 4 C 1.52993 * 109.47092 * 239.99483 * 2 1 3 5 5 C 1.50699 * 109.47433 * 60.00323 * 4 2 1 6 6 O 1.21217 * 119.99686 * 359.97438 * 5 4 2 7 7 O 1.34313 * 120.00102 * 179.97438 * 5 4 2 8 8 C 1.34922 * 116.99544 * 180.02562 * 7 5 4 9 9 H 1.08000 * 120.00350 * 0.02562 * 8 7 5 10 10 C 1.38761 * 119.99582 * 179.97438 * 8 7 5 11 11 N 1.31442 * 120.00068 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99845 * 179.97438 * 10 8 7 13 13 H 1.48489 * 109.46965 * 90.00291 * 12 10 8 14 14 H 1.48499 * 109.46823 * 210.00249 * 12 10 8 15 15 H 1.48496 * 109.46880 * 330.00114 * 12 10 8 16 16 C 1.53002 * 109.46561 * 119.99649 * 2 1 3 17 17 C 1.50703 * 109.47361 * 299.99822 * 16 2 1 18 18 O 1.21250 * 119.99733 * 0.02562 * 17 16 2 19 19 C 1.47164 * 119.99851 * 180.02562 * 17 16 2 20 20 C 1.39855 * 120.16680 * 180.02562 * 19 17 16 21 21 C 1.37890 * 119.82316 * 179.97438 * 20 19 17 22 22 C 1.38404 * 120.17220 * 359.97438 * 21 20 19 23 23 C 1.38409 * 120.34828 * 0.04376 * 22 21 20 24 24 C 1.37888 * 120.17293 * 359.95823 * 23 22 21 25 25 H 1.08997 * 109.47359 * 300.00842 * 1 2 3 26 26 H 1.09006 * 109.46722 * 60.00609 * 1 2 3 27 27 H 1.09007 * 109.47088 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47091 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.46801 * 299.99342 * 3 2 1 30 30 H 1.08997 * 109.47667 * 59.99347 * 3 2 1 31 31 H 1.09001 * 109.47026 * 180.02562 * 4 2 1 32 32 H 1.08998 * 109.47744 * 299.99943 * 4 2 1 33 33 H 0.97000 * 119.99766 * 179.97438 * 11 10 8 34 34 H 1.09001 * 109.46706 * 179.97438 * 16 2 1 35 35 H 1.08995 * 109.47529 * 60.00219 * 16 2 1 36 36 H 1.07999 * 120.09085 * 359.69867 * 20 19 17 37 37 H 1.08000 * 119.91186 * 180.02562 * 21 20 19 38 38 H 1.07998 * 119.82754 * 180.02562 * 22 21 20 39 39 H 1.07996 * 119.91489 * 179.97438 * 23 22 21 40 40 H 1.07996 * 120.08508 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4797 6 8 0.8405 0.9743 -2.3685 7 8 1.8627 -0.4698 -3.6995 8 6 1.3807 0.2127 -4.7589 9 1 0.7640 1.0857 -4.6037 10 6 1.6783 -0.2063 -6.0478 11 7 2.4293 -1.2684 -6.2366 12 14 1.0105 0.7382 -7.5146 13 1 1.9761 1.7974 -7.9025 14 1 0.8127 -0.1929 -8.6544 15 1 -0.2883 1.3606 -7.1528 16 6 2.0399 -0.7212 1.2493 17 6 1.5375 -0.0107 2.4798 18 8 0.8401 0.9749 2.3684 19 6 1.8934 -0.5132 3.8164 20 6 1.4287 0.1431 4.9606 21 6 1.7661 -0.3341 6.2096 22 6 2.5620 -1.4597 6.3325 23 6 3.0261 -2.1146 5.2049 24 6 2.6975 -1.6497 3.9490 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 3.1300 -0.7217 -1.2489 32 1 1.6767 -1.7490 -1.2491 33 1 2.6370 -1.5616 -7.1376 34 1 3.1299 -0.7216 1.2491 35 1 1.6766 -1.7488 1.2494 36 1 0.8110 1.0240 4.8664 37 1 1.4077 0.1714 7.0941 38 1 2.8225 -1.8289 7.3134 39 1 3.6470 -2.9921 5.3089 40 1 3.0607 -2.1615 3.0701 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000799568214.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:33 Heat of formation + Delta-G solvation = -94.891325 kcal Electronic energy + Delta-G solvation = -22583.276481 eV Core-core repulsion = 19135.598541 eV Total energy + Delta-G solvation = -3447.677941 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.53725 -39.25182 -38.44975 -36.35556 -34.48945 -32.08620 -31.97527 -31.24909 -28.70801 -27.71433 -26.71681 -25.05106 -23.95103 -22.74410 -20.96405 -19.78016 -18.34208 -17.63444 -17.49250 -16.44460 -15.98815 -15.56261 -15.19052 -14.91033 -14.82805 -14.60384 -14.28310 -13.98659 -13.79417 -13.74687 -13.04218 -12.90562 -12.71626 -12.09268 -11.94624 -11.86704 -11.52608 -11.44146 -11.39685 -10.97871 -10.92493 -10.79048 -10.61063 -10.38512 -10.28240 -9.97108 -9.73645 -9.37331 -9.31364 -9.22783 -8.58829 -8.51073 -6.35662 -4.02861 0.45072 1.05968 2.30493 3.15129 3.22028 3.28127 3.54777 3.61917 3.80623 4.05109 4.50650 4.61247 4.62515 4.73859 4.94058 5.08935 5.09237 5.11918 5.18965 5.27848 5.42760 5.54521 5.68085 5.70290 5.71979 5.81188 6.01780 6.07959 6.11170 6.15618 6.17518 6.44138 6.49767 6.52330 6.56792 6.62305 6.91144 7.04501 7.08190 7.47710 7.59103 8.03554 8.83598 9.13922 9.95172 10.82782 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.045260 B = 0.002887 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.495322 B = 9696.861991 C =10119.001064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.033 4.033 3 C -0.163 4.163 4 C -0.097 4.097 5 C 0.401 3.599 6 O -0.544 6.544 7 O -0.219 6.219 8 C -0.379 4.379 9 H 0.095 0.905 10 C 0.040 3.960 11 N -0.869 5.869 12 Si 0.941 3.059 13 H -0.274 1.274 14 H -0.279 1.279 15 H -0.267 1.267 16 C -0.158 4.158 17 C 0.394 3.606 18 O -0.433 6.433 19 C -0.164 4.164 20 C -0.065 4.065 21 C -0.134 4.134 22 C -0.094 4.094 23 C -0.134 4.134 24 C -0.074 4.074 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.037 0.963 28 H 0.037 0.963 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.268 0.732 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.133 0.867 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.128 0.872 40 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.125 -3.014 22.803 23.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.033 4.033 3 C -0.220 4.220 4 C -0.135 4.135 5 C 0.248 3.752 6 O -0.442 6.442 7 O -0.126 6.126 8 C -0.456 4.456 9 H 0.113 0.887 10 C -0.163 4.163 11 N -0.506 5.506 12 Si 0.766 3.234 13 H -0.200 1.200 14 H -0.204 1.204 15 H -0.192 1.192 16 C -0.195 4.195 17 C 0.271 3.729 18 O -0.307 6.307 19 C -0.165 4.165 20 C -0.083 4.083 21 C -0.152 4.152 22 C -0.113 4.113 23 C -0.152 4.152 24 C -0.092 4.092 25 H 0.086 0.914 26 H 0.107 0.893 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.117 0.883 35 H 0.117 0.883 36 H 0.151 0.849 37 H 0.145 0.855 38 H 0.143 0.857 39 H 0.146 0.854 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.664 -2.372 22.561 22.747 hybrid contribution -0.082 0.134 -0.646 0.665 sum 1.583 -2.238 21.915 22.086 Atomic orbital electron populations 1.22303 0.93773 1.00963 1.04972 1.20057 0.96970 0.95693 0.90574 1.22300 0.99048 0.95687 1.04967 1.21203 1.01930 0.99814 0.90578 1.23097 0.81482 0.84745 0.85863 1.90432 1.39052 1.27732 1.86962 1.83888 1.63873 1.51904 1.12975 1.21199 1.31480 1.10877 0.82004 0.88749 1.25314 0.96494 0.96554 0.97958 1.69993 1.35125 1.23027 1.22458 0.85707 0.79365 0.78748 0.79578 1.19970 1.20414 1.19160 1.22143 1.02689 1.01027 0.93641 1.22457 0.77555 0.83503 0.89340 1.90444 1.28853 1.22897 1.88552 1.20701 1.02165 0.98349 0.95281 1.21478 0.96644 0.98639 0.91569 1.21167 0.99369 0.97256 0.97453 1.21420 0.95997 0.94931 0.98908 1.21173 1.00999 1.00636 0.92382 1.21540 0.95060 0.94409 0.98223 0.91421 0.89298 0.94389 0.94390 0.89298 0.91431 0.89326 0.89326 0.92216 0.88337 0.88338 0.84915 0.85541 0.85729 0.85399 0.84788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.85 7.88 37.16 0.29 -2.56 16 2 C -0.03 -0.53 0.51 -154.51 -0.08 -0.60 16 3 C -0.16 -2.85 7.88 37.16 0.29 -2.55 16 4 C -0.10 -1.74 4.88 -27.89 -0.14 -1.87 16 5 C 0.40 9.77 7.32 36.00 0.26 10.03 16 6 O -0.54 -14.09 10.58 -19.06 -0.20 -14.29 16 7 O -0.22 -6.31 9.75 -20.71 -0.20 -6.51 16 8 C -0.38 -11.32 9.65 30.93 0.30 -11.02 16 9 H 0.09 2.83 6.86 -52.49 -0.36 2.47 16 10 C 0.04 1.15 5.49 -17.52 -0.10 1.05 16 11 N -0.87 -25.78 13.67 55.48 0.76 -25.02 16 12 Si 0.94 21.66 29.55 -169.99 -5.02 16.64 16 13 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 14 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 15 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 16 C -0.16 -1.85 3.38 -27.88 -0.09 -1.95 16 17 C 0.39 4.93 6.53 -30.69 -0.20 4.73 16 18 O -0.43 -6.66 11.34 5.58 0.06 -6.60 16 19 C -0.16 -1.73 5.87 -105.07 -0.62 -2.34 16 20 C -0.07 -0.65 9.60 -39.10 -0.38 -1.02 16 21 C -0.13 -1.06 10.03 -39.65 -0.40 -1.46 16 22 C -0.09 -0.66 10.04 -39.46 -0.40 -1.06 16 23 C -0.13 -0.96 10.03 -39.65 -0.40 -1.36 16 24 C -0.07 -0.62 9.47 -39.11 -0.37 -0.99 16 25 H 0.07 1.16 5.51 -51.93 -0.29 0.88 16 26 H 0.09 1.85 5.51 -51.93 -0.29 1.57 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.09 1.85 5.51 -51.93 -0.29 1.56 16 30 H 0.07 1.16 5.51 -51.93 -0.29 0.87 16 31 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 32 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.10 0.96 8.09 -51.93 -0.42 0.54 16 35 H 0.10 0.96 8.09 -51.93 -0.42 0.54 16 36 H 0.13 1.33 7.65 -52.49 -0.40 0.93 16 37 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 38 H 0.12 0.57 8.06 -52.49 -0.42 0.15 16 39 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 40 H 0.13 0.87 7.05 -52.49 -0.37 0.50 16 LS Contribution 329.60 15.07 4.97 4.97 Total: -1.00 -34.26 329.60 -6.86 -41.12 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -5.21 Total: 2.66 kcal Atomic # 6 Polarization: -10.96 SS G_CDS: -2.01 Total: -12.97 kcal Atomic # 7 Polarization: -25.78 SS G_CDS: 0.76 Total: -25.02 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.34 Total: -27.40 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -34.26 -6.86 -41.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799568214.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.774 kcal (2) G-P(sol) polarization free energy of solvation -34.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds