Wall clock time and date at job start Tue Mar 31 2020 05:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47170 * 2 1 4 4 C 1.52993 * 109.47092 * 239.99483 * 2 1 3 5 5 C 1.50699 * 109.47433 * 60.00323 * 4 2 1 6 6 O 1.21217 * 119.99686 * 359.97438 * 5 4 2 7 7 O 1.34313 * 120.00102 * 179.97438 * 5 4 2 8 8 C 1.34922 * 116.99544 * 180.02562 * 7 5 4 9 9 H 1.08000 * 120.00350 * 0.02562 * 8 7 5 10 10 C 1.38761 * 119.99582 * 179.97438 * 8 7 5 11 11 N 1.31442 * 120.00068 * 0.02562 * 10 8 7 12 12 Si 1.86805 * 119.99845 * 179.97438 * 10 8 7 13 13 H 1.48489 * 109.46965 * 90.00291 * 12 10 8 14 14 H 1.48499 * 109.46823 * 210.00249 * 12 10 8 15 15 H 1.48496 * 109.46880 * 330.00114 * 12 10 8 16 16 C 1.53002 * 109.46561 * 119.99649 * 2 1 3 17 17 C 1.50703 * 109.47361 * 299.99822 * 16 2 1 18 18 O 1.21250 * 119.99733 * 0.02562 * 17 16 2 19 19 C 1.47164 * 119.99851 * 180.02562 * 17 16 2 20 20 C 1.39855 * 120.16680 * 180.02562 * 19 17 16 21 21 C 1.37890 * 119.82316 * 179.97438 * 20 19 17 22 22 C 1.38404 * 120.17220 * 359.97438 * 21 20 19 23 23 C 1.38409 * 120.34828 * 0.04376 * 22 21 20 24 24 C 1.37888 * 120.17293 * 359.95823 * 23 22 21 25 25 H 1.08997 * 109.47359 * 300.00842 * 1 2 3 26 26 H 1.09006 * 109.46722 * 60.00609 * 1 2 3 27 27 H 1.09007 * 109.47088 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47091 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.46801 * 299.99342 * 3 2 1 30 30 H 1.08997 * 109.47667 * 59.99347 * 3 2 1 31 31 H 1.09001 * 109.47026 * 180.02562 * 4 2 1 32 32 H 1.08998 * 109.47744 * 299.99943 * 4 2 1 33 33 H 0.97000 * 119.99766 * 179.97438 * 11 10 8 34 34 H 1.09001 * 109.46706 * 179.97438 * 16 2 1 35 35 H 1.08995 * 109.47529 * 60.00219 * 16 2 1 36 36 H 1.07999 * 120.09085 * 359.69867 * 20 19 17 37 37 H 1.08000 * 119.91186 * 180.02562 * 21 20 19 38 38 H 1.07998 * 119.82754 * 180.02562 * 22 21 20 39 39 H 1.07996 * 119.91489 * 179.97438 * 23 22 21 40 40 H 1.07996 * 120.08508 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4797 6 8 0.8405 0.9743 -2.3685 7 8 1.8627 -0.4698 -3.6995 8 6 1.3807 0.2127 -4.7589 9 1 0.7640 1.0857 -4.6037 10 6 1.6783 -0.2063 -6.0478 11 7 2.4293 -1.2684 -6.2366 12 14 1.0105 0.7382 -7.5146 13 1 1.9761 1.7974 -7.9025 14 1 0.8127 -0.1929 -8.6544 15 1 -0.2883 1.3606 -7.1528 16 6 2.0399 -0.7212 1.2493 17 6 1.5375 -0.0107 2.4798 18 8 0.8401 0.9749 2.3684 19 6 1.8934 -0.5132 3.8164 20 6 1.4287 0.1431 4.9606 21 6 1.7661 -0.3341 6.2096 22 6 2.5620 -1.4597 6.3325 23 6 3.0261 -2.1146 5.2049 24 6 2.6975 -1.6497 3.9490 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6766 1.9564 0.8899 31 1 3.1300 -0.7217 -1.2489 32 1 1.6767 -1.7490 -1.2491 33 1 2.6370 -1.5616 -7.1376 34 1 3.1299 -0.7216 1.2491 35 1 1.6766 -1.7488 1.2494 36 1 0.8110 1.0240 4.8664 37 1 1.4077 0.1714 7.0941 38 1 2.8225 -1.8289 7.3134 39 1 3.6470 -2.9921 5.3089 40 1 3.0607 -2.1615 3.0701 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000799568214.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:32 Heat of formation + Delta-G solvation = -114.504757 kcal Electronic energy + Delta-G solvation = -22584.126984 eV Core-core repulsion = 19135.598541 eV Total energy + Delta-G solvation = -3448.528443 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.65888 -40.85237 -39.35972 -37.95861 -36.26137 -34.26379 -32.70556 -31.84380 -30.05674 -28.95260 -28.14790 -27.15170 -24.73746 -23.39565 -22.52773 -20.89599 -19.88430 -19.53321 -18.38994 -18.21602 -16.77459 -16.77259 -16.60364 -16.30036 -16.18822 -16.11523 -15.52717 -15.14499 -14.97252 -14.61912 -14.32018 -14.05365 -13.81641 -13.69174 -13.43382 -13.36283 -12.85736 -12.69989 -12.58448 -12.23170 -12.19171 -12.16205 -12.04164 -11.88490 -11.85571 -11.84160 -11.57366 -10.67844 -10.65076 -10.23754 -9.89991 -9.87553 -8.51216 -6.29648 -0.25159 0.47559 1.33096 1.33688 1.50297 1.51282 1.72743 2.13406 2.74576 2.91623 2.99954 3.14642 3.75693 3.90643 3.94962 3.98416 4.09167 4.24487 4.32013 4.43522 4.53485 4.58936 4.66129 4.69002 4.75543 4.83923 4.88040 4.96712 4.99599 5.11624 5.11648 5.12985 5.20224 5.38482 5.43931 5.54559 5.55148 5.55176 5.62228 5.90203 6.01034 6.66099 6.82292 6.95207 7.86532 8.69881 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.045260 B = 0.002887 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.495322 B = 9696.861991 C =10119.001064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.030 4.030 3 C -0.159 4.159 4 C -0.089 4.089 5 C 0.396 3.604 6 O -0.564 6.564 7 O -0.252 6.252 8 C -0.416 4.416 9 H 0.078 0.922 10 C -0.006 4.006 11 N -0.905 5.905 12 Si 1.013 2.987 13 H -0.261 1.261 14 H -0.259 1.259 15 H -0.267 1.267 16 C -0.151 4.151 17 C 0.396 3.604 18 O -0.477 6.477 19 C -0.187 4.187 20 C -0.086 4.086 21 C -0.141 4.141 22 C -0.090 4.090 23 C -0.136 4.136 24 C -0.074 4.074 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.046 0.954 30 H 0.066 0.934 31 H 0.115 0.885 32 H 0.115 0.885 33 H 0.277 0.723 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.118 0.882 37 H 0.144 0.856 38 H 0.153 0.847 39 H 0.156 0.844 40 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.486 -4.900 24.312 25.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.030 4.030 3 C -0.215 4.215 4 C -0.127 4.127 5 C 0.244 3.756 6 O -0.462 6.462 7 O -0.161 6.161 8 C -0.492 4.492 9 H 0.095 0.905 10 C -0.205 4.205 11 N -0.543 5.543 12 Si 0.833 3.167 13 H -0.186 1.186 14 H -0.183 1.183 15 H -0.191 1.191 16 C -0.188 4.188 17 C 0.277 3.723 18 O -0.354 6.354 19 C -0.187 4.187 20 C -0.104 4.104 21 C -0.159 4.159 22 C -0.108 4.108 23 C -0.153 4.153 24 C -0.092 4.092 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.133 0.867 32 H 0.133 0.867 33 H 0.087 0.913 34 H 0.147 0.853 35 H 0.147 0.853 36 H 0.136 0.864 37 H 0.161 0.839 38 H 0.171 0.829 39 H 0.174 0.826 40 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 3.036 -4.271 24.100 24.664 hybrid contribution -0.504 0.719 -0.918 1.271 sum 2.532 -3.551 23.182 23.589 Atomic orbital electron populations 1.22207 0.95284 1.01320 1.02746 1.20033 0.95777 0.95115 0.92055 1.22204 0.99974 0.96626 1.02744 1.21405 1.03398 1.00334 0.87520 1.24509 0.80230 0.84496 0.86397 1.90448 1.39620 1.28808 1.87288 1.83909 1.65117 1.52826 1.14218 1.21331 1.32971 1.11459 0.83451 0.90455 1.26457 0.96233 0.97417 1.00443 1.70068 1.36012 1.24359 1.23848 0.84686 0.78682 0.77762 0.75618 1.18587 1.18349 1.19132 1.22148 1.04471 1.01636 0.90541 1.22777 0.76338 0.82635 0.90562 1.90437 1.31080 1.24842 1.89088 1.20601 1.04152 0.99924 0.94067 1.21544 0.97358 0.98784 0.92722 1.21415 0.99467 0.97821 0.97157 1.21831 0.94561 0.93966 1.00427 1.21572 1.00696 1.01248 0.91827 1.21823 0.94097 0.93436 0.99807 0.91491 0.93523 0.92718 0.92711 0.93513 0.91502 0.86713 0.86720 0.91341 0.85293 0.85301 0.86410 0.83853 0.82927 0.82605 0.82597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.61 7.88 71.98 0.57 -5.04 16 2 C -0.03 -0.92 0.51 -52.18 -0.03 -0.95 16 3 C -0.16 -5.60 7.88 71.98 0.57 -5.04 16 4 C -0.09 -3.05 4.88 29.85 0.15 -2.91 16 5 C 0.40 19.75 7.32 71.24 0.52 20.27 16 6 O -0.56 -30.72 10.58 20.75 0.22 -30.50 16 7 O -0.25 -14.95 9.75 14.83 0.14 -14.80 16 8 C -0.42 -25.73 9.65 67.95 0.66 -25.08 16 9 H 0.08 4.89 6.86 -2.91 -0.02 4.87 16 10 C -0.01 -0.34 5.49 84.88 0.47 0.13 16 11 N -0.90 -54.18 13.67 21.63 0.30 -53.88 16 12 Si 1.01 44.61 29.55 68.60 2.03 46.64 16 13 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 14 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 15 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 16 C -0.15 -3.09 3.38 29.85 0.10 -2.99 16 17 C 0.40 9.45 6.53 28.03 0.18 9.63 16 18 O -0.48 -14.97 11.34 -2.94 -0.03 -15.01 16 19 C -0.19 -3.62 5.87 -20.15 -0.12 -3.74 16 20 C -0.09 -1.66 9.60 22.58 0.22 -1.44 16 21 C -0.14 -1.95 10.03 22.23 0.22 -1.73 16 22 C -0.09 -0.94 10.04 22.35 0.22 -0.72 16 23 C -0.14 -1.40 10.03 22.23 0.22 -1.18 16 24 C -0.07 -0.98 9.47 22.58 0.21 -0.76 16 25 H 0.07 2.37 5.51 -2.39 -0.01 2.36 16 26 H 0.05 2.03 5.51 -2.38 -0.01 2.02 16 27 H 0.05 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 29 H 0.05 2.04 5.51 -2.38 -0.01 2.02 16 30 H 0.07 2.37 5.51 -2.39 -0.01 2.36 16 31 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 32 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 33 H 0.28 15.05 8.31 -92.71 -0.77 14.28 16 34 H 0.13 1.92 8.09 -2.39 -0.02 1.90 16 35 H 0.13 1.92 8.09 -2.39 -0.02 1.90 16 36 H 0.12 2.51 7.65 -2.91 -0.02 2.49 16 37 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 38 H 0.15 0.71 8.06 -2.91 -0.02 0.69 16 39 H 0.16 0.73 8.06 -2.91 -0.02 0.71 16 40 H 0.16 1.28 7.05 -2.91 -0.02 1.26 16 Total: -1.00 -79.59 329.60 7.86 -71.72 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: 1.05 Total: 17.37 kcal Atomic # 6 Polarization: -25.70 SS G_CDS: 4.16 Total: -21.54 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: 0.30 Total: -53.88 kcal Atomic # 8 Polarization: -60.64 SS G_CDS: 0.33 Total: -60.31 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Total: -79.59 7.86 -71.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000799568214.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.780 kcal (2) G-P(sol) polarization free energy of solvation -79.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds