Wall clock time and date at job start Tue Mar 31 2020 05:47:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42897 * 109.47316 * 2 1 4 4 C 1.50700 * 109.46927 * 120.00485 * 2 1 3 5 5 O 1.20820 * 120.00195 * 95.00232 * 4 2 1 6 6 O 1.34234 * 119.99755 * 274.99444 * 4 2 1 7 7 C 1.45200 * 116.99915 * 180.02562 * 6 4 2 8 8 C 1.50696 * 109.47133 * 180.02562 * 7 6 4 9 9 C 1.38634 * 119.74997 * 269.72977 * 8 7 6 10 10 C 1.37612 * 120.25103 * 179.72242 * 9 8 7 11 11 C 1.40719 * 119.74046 * 0.56674 * 10 9 8 12 12 C 1.41405 * 120.24207 * 179.68069 * 11 10 9 13 13 H 1.07997 * 119.99593 * 155.31204 * 12 11 10 14 14 C 1.39946 * 120.00201 * 335.31428 * 12 11 10 15 15 N 1.30826 * 119.99602 * 342.23116 * 14 12 11 16 16 Si 1.86800 * 119.99914 * 162.22833 * 14 12 11 17 17 H 1.48501 * 109.46609 * 94.66727 * 16 14 12 18 18 H 1.48498 * 109.47037 * 214.66215 * 16 14 12 19 19 H 1.48499 * 109.47183 * 334.66983 * 16 14 12 20 20 C 1.40709 * 119.51471 * 359.70650 * 11 10 9 21 21 C 1.37621 * 119.74411 * 359.97438 * 20 11 10 22 22 C 1.53003 * 109.47280 * 240.00094 * 2 1 3 23 23 C 1.53004 * 117.51594 * 111.28271 * 22 2 1 24 24 C 1.52997 * 117.50003 * 179.91339 * 22 2 1 25 25 H 1.09001 * 109.46917 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46775 * 299.99605 * 1 2 3 27 27 H 1.09000 * 109.46934 * 59.99699 * 1 2 3 28 28 H 0.96702 * 114.00482 * 179.97438 * 3 2 1 29 29 H 1.09003 * 109.47006 * 300.00606 * 7 6 4 30 30 H 1.08999 * 109.47231 * 59.99842 * 7 6 4 31 31 H 1.07998 * 119.87238 * 359.97438 * 9 8 7 32 32 H 1.07999 * 120.13094 * 180.27467 * 10 9 8 33 33 H 0.96998 * 119.99219 * 179.97438 * 15 14 12 34 34 H 1.08005 * 120.13274 * 179.97438 * 20 11 10 35 35 H 1.07998 * 119.87728 * 179.97438 * 21 20 11 36 36 H 1.09002 * 115.54773 * 325.59025 * 22 2 1 37 37 H 1.09001 * 117.49992 * 214.97155 * 23 22 2 38 38 H 1.09000 * 117.49730 * 359.97438 * 23 22 2 39 39 H 1.08999 * 117.49897 * 359.97438 * 24 22 2 40 40 H 1.09002 * 117.49639 * 144.98065 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.3197 -1.8828 1.1761 6 8 2.1606 -0.0409 2.3867 7 6 2.6507 -0.7888 3.5307 8 6 2.7277 0.1206 4.7299 9 6 3.8950 0.8229 4.9868 10 6 3.9747 1.6606 6.0757 11 6 2.8694 1.7936 6.9365 12 6 2.9421 2.6462 8.0622 13 1 2.0389 3.0629 8.4830 14 6 4.1841 2.9500 8.6310 15 7 5.2247 2.2022 8.3674 16 14 4.3561 4.4232 9.7665 17 1 4.2085 3.9811 11.1765 18 1 5.6940 5.0396 9.5785 19 1 3.3025 5.4198 9.4474 20 6 1.6917 1.0715 6.6691 21 6 1.6323 0.2446 5.5706 22 6 2.0401 -0.7212 -1.2493 23 6 2.7401 0.1227 -2.3164 24 6 3.5551 -0.8263 -1.4353 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 2.9704 1.4236 0.0004 29 1 1.9708 -1.6138 3.7437 30 1 3.6423 -1.1833 3.3092 31 1 4.7436 0.7153 4.3276 32 1 4.8835 2.2102 6.2715 33 1 6.0856 2.4130 8.7613 34 1 0.8376 1.1657 7.3234 35 1 0.7296 -0.3109 5.3636 36 1 1.4319 -1.5594 -1.5895 37 1 2.5925 -0.1603 -3.3587 38 1 2.8370 1.1920 -2.1288 39 1 4.1884 -0.3812 -0.6680 40 1 3.9436 -1.7337 -1.8976 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805579616.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:47:59 Heat of formation + Delta-G solvation = -112.714769 kcal Electronic energy + Delta-G solvation = -22535.094432 eV Core-core repulsion = 19086.643609 eV Total energy + Delta-G solvation = -3448.450823 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.93335 -39.83749 -39.21605 -37.50773 -36.13222 -35.66433 -32.72765 -32.27023 -31.25340 -29.04033 -26.33860 -25.32394 -23.54342 -23.07867 -22.96525 -21.85441 -20.91745 -19.45975 -19.28271 -18.06318 -17.90960 -17.36463 -17.05040 -16.31256 -16.01771 -15.68797 -15.50409 -14.86519 -14.57983 -14.29072 -13.97200 -13.87800 -13.68217 -13.52252 -13.40340 -13.15878 -13.08536 -12.96471 -12.78791 -12.43080 -12.40674 -12.20756 -12.01414 -11.70977 -11.55113 -11.44442 -11.31974 -11.14632 -11.07021 -10.93383 -9.45494 -9.35024 -8.70387 -6.40798 0.70278 1.02913 1.09115 1.37815 1.41555 1.53716 1.78539 2.19139 2.65777 2.84041 3.06075 3.41726 3.58035 3.70262 3.78236 4.03871 4.04742 4.07162 4.08186 4.35263 4.45023 4.46424 4.51961 4.71372 4.72925 4.74995 4.95333 4.98193 5.06652 5.10582 5.12706 5.22603 5.27919 5.37173 5.44548 5.63228 5.86071 6.03940 6.11775 6.30131 6.33788 6.62425 6.72971 6.87123 6.95339 8.26778 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.029831 B = 0.003098 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 938.383018 B = 9037.198966 C = 9190.435512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.181 3.819 3 O -0.540 6.540 4 C 0.429 3.571 5 O -0.525 6.525 6 O -0.352 6.352 7 C 0.138 3.862 8 C -0.231 4.231 9 C -0.080 4.080 10 C -0.192 4.192 11 C 0.088 3.912 12 C -0.493 4.493 13 H 0.080 0.920 14 C 0.036 3.964 15 N -0.818 5.818 16 Si 0.985 3.015 17 H -0.261 1.261 18 H -0.265 1.265 19 H -0.258 1.258 20 C -0.245 4.245 21 C -0.066 4.066 22 C -0.184 4.184 23 C -0.143 4.143 24 C -0.186 4.186 25 H 0.087 0.913 26 H 0.064 0.936 27 H 0.102 0.898 28 H 0.389 0.611 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.105 0.895 33 H 0.291 0.709 34 H 0.103 0.897 35 H 0.116 0.884 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.082 0.918 40 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.682 -2.472 -16.715 17.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.138 3.862 3 O -0.348 6.348 4 C 0.272 3.728 5 O -0.414 6.414 6 O -0.268 6.268 7 C 0.066 3.934 8 C -0.232 4.232 9 C -0.098 4.098 10 C -0.212 4.212 11 C 0.086 3.914 12 C -0.522 4.522 13 H 0.098 0.902 14 C -0.180 4.180 15 N -0.444 5.444 16 Si 0.805 3.195 17 H -0.186 1.186 18 H -0.189 1.189 19 H -0.182 1.182 20 C -0.265 4.265 21 C -0.084 4.084 22 C -0.203 4.203 23 C -0.179 4.179 24 C -0.223 4.223 25 H 0.106 0.894 26 H 0.083 0.917 27 H 0.121 0.879 28 H 0.239 0.761 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.124 0.876 32 H 0.123 0.877 33 H 0.102 0.898 34 H 0.121 0.879 35 H 0.134 0.866 36 H 0.145 0.855 37 H 0.137 0.863 38 H 0.128 0.872 39 H 0.100 0.900 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.963 -2.737 -16.620 17.304 hybrid contribution 1.008 0.008 1.020 1.434 sum -2.955 -2.729 -15.600 16.110 Atomic orbital electron populations 1.21813 0.88412 1.04189 1.05032 1.20698 0.97542 0.81683 0.86281 1.86622 1.28214 1.23658 1.96256 1.25431 0.74464 0.86721 0.86200 1.90612 1.46663 1.18243 1.85911 1.86765 1.76156 1.44929 1.18971 1.21556 0.98706 0.92096 0.81043 1.18967 0.96144 1.09080 0.99005 1.20755 0.96555 0.95932 0.96597 1.21260 1.00188 1.03577 0.96141 1.18043 0.91780 0.89707 0.91881 1.19928 0.94427 1.26140 1.11708 0.90228 1.26830 0.94410 0.98900 0.97907 1.69871 1.02224 1.34775 1.37488 0.85156 0.78993 0.77486 0.77892 1.18602 1.18908 1.18165 1.21167 0.99660 1.03962 1.01669 1.20696 0.96640 0.97033 0.94055 1.22794 0.96916 1.03770 0.96807 1.23159 1.00241 0.98170 0.96349 1.23020 0.92631 1.03093 1.03542 0.89414 0.91731 0.87912 0.76123 0.91182 0.91538 0.87578 0.87748 0.89844 0.87891 0.86584 0.85459 0.86309 0.87221 0.89954 0.87620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 8.81 71.98 0.63 -2.07 16 2 C 0.18 4.18 1.19 -11.54 -0.01 4.16 16 3 O -0.54 -12.63 11.51 -135.71 -1.56 -14.20 16 4 C 0.43 13.18 6.49 71.24 0.46 13.64 16 5 O -0.52 -17.89 15.81 21.98 0.35 -17.54 16 6 O -0.35 -12.65 9.96 -46.51 -0.46 -13.11 16 7 C 0.14 5.18 5.58 71.23 0.40 5.58 16 8 C -0.23 -10.18 5.54 -19.68 -0.11 -10.29 16 9 C -0.08 -3.77 9.67 22.22 0.21 -3.56 16 10 C -0.19 -10.19 8.70 22.73 0.20 -9.99 16 11 C 0.09 4.80 5.57 -21.29 -0.12 4.68 16 12 C -0.49 -26.44 9.05 23.46 0.21 -26.23 16 13 H 0.08 4.09 7.91 -2.91 -0.02 4.07 16 14 C 0.04 1.77 5.14 85.26 0.44 2.21 16 15 N -0.82 -42.23 10.97 21.83 0.24 -41.99 16 16 Si 0.98 37.42 29.60 68.60 2.03 39.45 16 17 H -0.26 -9.53 7.11 99.48 0.71 -8.82 16 18 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 19 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 20 C -0.25 -12.15 9.80 22.73 0.22 -11.93 16 21 C -0.07 -2.96 9.67 22.22 0.21 -2.74 16 22 C -0.18 -3.42 4.60 -10.79 -0.05 -3.47 16 23 C -0.14 -1.98 9.77 30.60 0.30 -1.68 16 24 C -0.19 -3.31 9.34 30.59 0.29 -3.03 16 25 H 0.09 1.51 8.14 -2.39 -0.02 1.50 16 26 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 27 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.39 7.38 7.81 -74.06 -0.58 6.80 16 29 H 0.07 2.48 8.07 -2.39 -0.02 2.46 16 30 H 0.07 2.40 8.07 -2.39 -0.02 2.38 16 31 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 32 H 0.10 5.74 6.18 -2.91 -0.02 5.72 16 33 H 0.29 13.46 8.30 -92.71 -0.77 12.69 16 34 H 0.10 4.78 8.06 -2.91 -0.02 4.75 16 35 H 0.12 4.47 8.06 -2.91 -0.02 4.45 16 36 H 0.13 2.15 8.11 -2.39 -0.02 2.14 16 37 H 0.12 1.21 8.14 -2.39 -0.02 1.19 16 38 H 0.11 1.47 6.86 -2.39 -0.02 1.46 16 39 H 0.08 1.61 7.81 -2.39 -0.02 1.59 16 40 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -62.72 342.07 4.35 -58.37 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: 0.47 Total: 33.73 kcal Atomic # 6 Polarization: -48.00 SS G_CDS: 3.29 Total: -44.71 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: 0.24 Total: -41.99 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -1.68 Total: -44.85 kcal Atomic # 14 Polarization: 37.42 SS G_CDS: 2.03 Total: 39.45 kcal Total: -62.72 4.35 -58.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805579616.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.348 kcal (2) G-P(sol) polarization free energy of solvation -62.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds