Wall clock time and date at job start Tue Mar 31 2020 05:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.47268 * 2 1 4 4 C 1.50702 * 109.46618 * 240.00363 * 2 1 3 5 5 O 1.20825 * 119.99646 * 264.00810 * 4 2 1 6 6 O 1.34222 * 120.00305 * 84.01493 * 4 2 1 7 7 C 1.45200 * 117.00290 * 179.97438 * 6 4 2 8 8 C 1.50698 * 109.47539 * 179.97438 * 7 6 4 9 9 C 1.38628 * 119.75430 * 269.73061 * 8 7 6 10 10 C 1.37620 * 120.24998 * 179.71703 * 9 8 7 11 11 C 1.40711 * 119.74342 * 0.57371 * 10 9 8 12 12 C 1.41392 * 120.24248 * 179.68282 * 11 10 9 13 13 H 1.08001 * 119.99847 * 206.78070 * 12 11 10 14 14 C 1.39946 * 120.00639 * 26.77899 * 12 11 10 15 15 N 1.30827 * 119.99669 * 17.17769 * 14 12 11 16 16 Si 1.86798 * 120.00289 * 197.18253 * 14 12 11 17 17 H 1.48497 * 109.47220 * 89.99766 * 16 14 12 18 18 H 1.48503 * 109.46998 * 209.99630 * 16 14 12 19 19 H 1.48500 * 109.47119 * 329.99644 * 16 14 12 20 20 C 1.40715 * 119.51225 * 359.70112 * 11 10 9 21 21 C 1.37612 * 119.74688 * 359.97438 * 20 11 10 22 22 C 1.52996 * 109.47372 * 120.00311 * 2 1 3 23 23 C 1.53000 * 117.51962 * 226.01607 * 22 2 1 24 24 C 1.53001 * 117.49966 * 294.64708 * 22 2 1 25 25 H 1.09003 * 109.46941 * 299.99995 * 1 2 3 26 26 H 1.09002 * 109.47221 * 59.99679 * 1 2 3 27 27 H 1.08998 * 109.47469 * 179.97438 * 1 2 3 28 28 H 0.96700 * 114.00008 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.47214 * 299.99926 * 7 6 4 30 30 H 1.08998 * 109.46995 * 59.99711 * 7 6 4 31 31 H 1.08002 * 119.87217 * 359.97438 * 9 8 7 32 32 H 1.08000 * 120.12632 * 180.27856 * 10 9 8 33 33 H 0.96992 * 119.99933 * 180.02562 * 15 14 12 34 34 H 1.08002 * 120.12920 * 179.97438 * 20 11 10 35 35 H 1.07998 * 119.88356 * 179.97438 * 21 20 11 36 36 H 1.08995 * 115.54986 * 80.31151 * 22 2 1 37 37 H 1.08995 * 117.50171 * 214.96837 * 23 22 2 38 38 H 1.09002 * 117.49718 * 359.97438 * 23 22 2 39 39 H 1.09003 * 117.49487 * 359.97438 * 24 22 2 40 40 H 1.08996 * 117.50029 * 144.99328 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0322 -0.7104 -1.2306 5 8 2.3365 -1.8782 -1.1720 6 8 2.1416 -0.0457 -2.3915 7 6 2.6328 -0.7932 -3.5353 8 6 2.6873 0.1103 -4.7402 9 6 1.5858 0.2095 -5.5761 10 6 1.6222 1.0359 -6.6759 11 6 2.7877 1.7725 -6.9573 12 6 2.8390 2.6195 -8.0882 13 1 3.7873 2.8377 -8.5568 14 6 1.6612 3.1752 -8.6005 15 7 0.5772 3.1996 -7.8685 16 14 1.6368 3.8821 -10.3294 17 1 1.2602 2.8178 -11.2940 18 1 0.6461 4.9862 -10.3988 19 1 2.9847 4.4043 -10.6697 20 6 3.9017 1.6595 -6.1051 21 6 3.8404 0.8322 -5.0072 22 6 2.0401 -0.7213 1.2492 23 6 3.1641 -0.0520 2.0425 24 6 1.7420 -0.0805 2.6062 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 2.9703 1.4235 -0.0004 29 1 3.6317 -1.1724 -3.3198 30 1 1.9630 -1.6288 -3.7382 31 1 0.6941 -0.3608 -5.3609 32 1 0.7614 1.1150 -7.3232 33 1 -0.2393 3.5844 -8.2236 34 1 4.8014 2.2200 -6.3119 35 1 4.6943 0.7435 -4.3519 36 1 2.0407 -1.8099 1.1960 37 1 3.9043 -0.7003 2.5113 38 1 3.5408 0.9023 1.6743 39 1 1.1829 0.8552 2.6089 40 1 1.5466 -0.7476 3.4457 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805579618.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:01 Heat of formation + Delta-G solvation = -113.491438 kcal Electronic energy + Delta-G solvation = -22481.134844 eV Core-core repulsion = 19032.650341 eV Total energy + Delta-G solvation = -3448.484502 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.92400 -39.85646 -39.26181 -37.54729 -36.14040 -35.65478 -32.71517 -32.18354 -31.26319 -29.03168 -26.47507 -25.43577 -23.36580 -23.12542 -22.96268 -21.86042 -20.89969 -19.41192 -19.26920 -18.17910 -17.85690 -17.43930 -17.16407 -16.26381 -15.81137 -15.66420 -15.48551 -14.92406 -14.71010 -14.28580 -13.92235 -13.87751 -13.79761 -13.56230 -13.52366 -13.27983 -12.94809 -12.83946 -12.68213 -12.59014 -12.37437 -12.11317 -11.95436 -11.73912 -11.54640 -11.43650 -11.31009 -11.19724 -11.10204 -10.91170 -9.45407 -9.33672 -8.69144 -6.41260 0.69866 0.99016 1.08646 1.37856 1.42332 1.52078 1.79488 2.19352 2.67559 2.78898 3.01684 3.46246 3.51992 3.74812 3.82567 4.02258 4.04839 4.06872 4.23461 4.30932 4.43470 4.45892 4.51969 4.67350 4.70412 4.78416 4.96136 4.98111 5.09069 5.11329 5.16415 5.25869 5.26801 5.36315 5.42287 5.63565 5.85303 6.03887 6.10936 6.30326 6.35320 6.62543 6.70929 6.87369 6.95183 8.28667 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.031278 B = 0.003073 C = 0.003007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 894.987147 B = 9108.010898 C = 9307.939932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.183 3.817 3 O -0.542 6.542 4 C 0.432 3.568 5 O -0.530 6.530 6 O -0.352 6.352 7 C 0.137 3.863 8 C -0.229 4.229 9 C -0.082 4.082 10 C -0.190 4.190 11 C 0.089 3.911 12 C -0.495 4.495 13 H 0.080 0.920 14 C 0.035 3.965 15 N -0.821 5.821 16 Si 0.985 3.015 17 H -0.262 1.262 18 H -0.268 1.268 19 H -0.257 1.257 20 C -0.242 4.242 21 C -0.065 4.065 22 C -0.197 4.197 23 C -0.176 4.176 24 C -0.143 4.143 25 H 0.101 0.899 26 H 0.061 0.939 27 H 0.086 0.914 28 H 0.391 0.609 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.105 0.895 32 H 0.101 0.899 33 H 0.290 0.710 34 H 0.104 0.896 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.104 0.896 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.422 -4.450 15.666 16.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.140 3.860 3 O -0.350 6.350 4 C 0.276 3.724 5 O -0.420 6.420 6 O -0.268 6.268 7 C 0.064 3.936 8 C -0.230 4.230 9 C -0.100 4.100 10 C -0.209 4.209 11 C 0.087 3.913 12 C -0.524 4.524 13 H 0.098 0.902 14 C -0.181 4.181 15 N -0.446 5.446 16 Si 0.806 3.194 17 H -0.186 1.186 18 H -0.192 1.192 19 H -0.180 1.180 20 C -0.261 4.261 21 C -0.083 4.083 22 C -0.215 4.215 23 C -0.213 4.213 24 C -0.180 4.180 25 H 0.120 0.880 26 H 0.080 0.920 27 H 0.104 0.896 28 H 0.242 0.758 29 H 0.093 0.907 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.122 0.878 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.126 0.874 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.346 -4.573 15.645 16.303 hybrid contribution 0.513 -0.021 -1.099 1.213 sum 0.167 -4.594 14.545 15.255 Atomic orbital electron populations 1.21809 0.88774 1.04092 1.04825 1.20604 0.97215 0.81710 0.86468 1.86627 1.28507 1.23618 1.96290 1.25344 0.74301 0.86506 0.86288 1.90599 1.46705 1.18537 1.86133 1.86774 1.76106 1.45218 1.18689 1.21620 0.98965 0.92115 0.80860 1.18988 0.96394 1.08903 0.98733 1.20768 0.96561 0.97723 0.94976 1.21201 0.99782 0.99915 1.00038 1.18040 0.91780 0.89844 0.91680 1.19917 0.95002 1.25938 1.11515 0.90153 1.26825 0.94036 0.94422 1.02835 1.69876 1.02690 1.34240 1.37815 0.85151 0.79503 0.78332 0.76433 1.18630 1.19221 1.18030 1.21199 1.00110 1.06314 0.98525 1.20710 0.96730 0.94681 0.96203 1.22728 1.07291 0.99960 0.91547 1.23164 0.92449 1.02787 1.02865 1.23030 0.98122 1.02781 0.94017 0.87985 0.92027 0.89555 0.75811 0.90737 0.91456 0.87705 0.88095 0.89910 0.87779 0.86315 0.86723 0.87404 0.87606 0.87751 0.86739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.96 8.72 71.98 0.63 -2.34 16 2 C 0.18 4.41 1.16 -11.54 -0.01 4.39 16 3 O -0.54 -13.11 12.03 -136.03 -1.64 -14.75 16 4 C 0.43 13.63 6.80 71.24 0.48 14.12 16 5 O -0.53 -18.31 15.61 21.97 0.34 -17.97 16 6 O -0.35 -12.93 9.97 -46.47 -0.46 -13.40 16 7 C 0.14 5.09 5.58 71.24 0.40 5.49 16 8 C -0.23 -10.05 5.54 -19.67 -0.11 -10.16 16 9 C -0.08 -3.88 9.67 22.22 0.21 -3.67 16 10 C -0.19 -10.10 8.68 22.73 0.20 -9.90 16 11 C 0.09 4.83 5.55 -21.29 -0.12 4.71 16 12 C -0.49 -26.51 9.05 23.46 0.21 -26.30 16 13 H 0.08 4.12 7.90 -2.91 -0.02 4.10 16 14 C 0.03 1.73 5.13 85.26 0.44 2.17 16 15 N -0.82 -42.93 11.08 21.83 0.24 -42.68 16 16 Si 0.99 37.69 29.59 68.60 2.03 39.72 16 17 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 18 H -0.27 -9.73 7.11 99.48 0.71 -9.02 16 19 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 20 C -0.24 -11.89 9.80 22.73 0.22 -11.66 16 21 C -0.07 -2.87 9.67 22.22 0.21 -2.66 16 22 C -0.20 -3.80 4.81 -10.79 -0.05 -3.85 16 23 C -0.18 -2.65 9.78 30.60 0.30 -2.35 16 24 C -0.14 -1.98 9.68 30.60 0.30 -1.68 16 25 H 0.10 1.73 7.66 -2.39 -0.02 1.71 16 26 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 27 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.39 7.44 7.36 -74.06 -0.54 6.90 16 29 H 0.07 2.56 8.07 -2.39 -0.02 2.54 16 30 H 0.07 2.41 8.07 -2.39 -0.02 2.39 16 31 H 0.10 4.50 8.06 -2.91 -0.02 4.47 16 32 H 0.10 5.58 6.31 -2.91 -0.02 5.56 16 33 H 0.29 13.66 8.30 -92.71 -0.77 12.89 16 34 H 0.10 4.77 8.06 -2.91 -0.02 4.75 16 35 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 36 H 0.11 2.46 7.48 -2.39 -0.02 2.44 16 37 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.11 1.45 6.32 -2.39 -0.02 1.44 16 39 H 0.10 1.43 7.95 -2.39 -0.02 1.41 16 40 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -63.17 341.36 4.34 -58.84 By element: Atomic # 1 Polarization: 33.42 SS G_CDS: 0.51 Total: 33.93 kcal Atomic # 6 Polarization: -46.99 SS G_CDS: 3.31 Total: -43.68 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: 0.24 Total: -42.68 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: -1.76 Total: -46.11 kcal Atomic # 14 Polarization: 37.69 SS G_CDS: 2.03 Total: 39.72 kcal Total: -63.17 4.34 -58.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805579618.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.654 kcal (2) G-P(sol) polarization free energy of solvation -63.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.838 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds