Wall clock time and date at job start Tue Mar 31 2020 06:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21285 * 120.00286 * 2 1 4 4 C 1.46910 * 119.99504 * 180.02562 * 2 1 3 5 5 C 1.40014 * 120.11397 * 180.02562 * 4 2 1 6 6 C 1.37626 * 119.88243 * 180.02562 * 5 4 2 7 7 C 1.39042 * 120.11864 * 359.97438 * 6 5 4 8 8 O 1.35724 * 119.88346 * 180.02562 * 7 6 5 9 9 C 1.34308 * 117.00101 * 77.10921 * 8 7 6 10 10 O 1.20832 * 119.99958 * 355.08649 * 9 8 7 11 11 C 1.50706 * 120.00349 * 175.08788 * 9 8 7 12 12 C 1.52995 * 109.47174 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47017 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.47124 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46961 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99974 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99756 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99883 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99724 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.46996 * 59.99846 * 19 17 15 21 21 H 1.48501 * 109.46875 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47175 * 299.99532 * 19 17 15 23 23 C 1.39044 * 120.22927 * 0.28168 * 7 6 5 24 24 C 1.37629 * 120.11313 * 359.44132 * 23 7 6 25 25 H 1.08995 * 109.47068 * 240.00199 * 1 2 3 26 26 H 1.09000 * 109.46809 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47335 * 119.99623 * 1 2 3 28 28 H 1.08003 * 120.05742 * 359.97438 * 5 4 2 29 29 H 1.08007 * 119.93601 * 179.97438 * 6 5 4 30 30 H 1.08991 * 109.46896 * 300.00000 * 11 9 8 31 31 H 1.09001 * 109.46584 * 59.99815 * 11 9 8 32 32 H 1.08996 * 109.47450 * 300.00433 * 12 11 9 33 33 H 1.09001 * 109.47302 * 60.00517 * 12 11 9 34 34 H 1.09004 * 109.47261 * 300.00221 * 13 12 11 35 35 H 1.08999 * 109.46979 * 60.00553 * 13 12 11 36 36 H 1.09004 * 109.46918 * 300.00047 * 14 13 12 37 37 H 1.08991 * 109.47193 * 59.99897 * 14 13 12 38 38 H 0.97006 * 119.99826 * 180.02562 * 18 17 15 39 39 H 1.07996 * 119.94108 * 179.72597 * 23 7 6 40 40 H 1.08005 * 120.05523 * 180.25591 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 6 2.2415 -1.2723 -0.0006 5 6 3.6416 -1.2752 0.0000 6 6 4.3248 -2.4700 -0.0011 7 6 3.6271 -3.6727 -0.0022 8 8 4.3057 -4.8481 -0.0027 9 6 4.8413 -5.2435 1.1638 10 8 4.7848 -4.5206 2.1304 11 6 5.5130 -6.5886 1.2671 12 6 6.0339 -6.7905 2.6914 13 6 6.7152 -8.1564 2.7965 14 6 7.2356 -8.3586 4.2210 15 6 7.9071 -9.7037 4.3243 16 1 7.9574 -10.3499 3.4605 17 6 8.4565 -10.1097 5.5220 18 7 8.3949 -9.3230 6.5740 19 14 9.2884 -11.7774 5.6501 20 1 10.4240 -11.8388 4.6953 21 1 9.7935 -11.9735 7.0327 22 1 8.3092 -12.8453 5.3243 23 6 2.2367 -3.6754 -0.0081 24 6 1.5439 -2.4862 -0.0013 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0277 0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 4.1845 -0.3416 0.0004 29 1 5.4049 -2.4732 -0.0011 30 1 4.7946 -7.3726 1.0281 31 1 6.3464 -6.6333 0.5660 32 1 6.7523 -6.0063 2.9301 33 1 5.2007 -6.7456 3.3928 34 1 5.9963 -8.9403 2.5580 35 1 7.5483 -8.2018 2.0951 36 1 7.9543 -7.5747 4.4599 37 1 6.4023 -8.3133 4.9221 38 1 8.7818 -9.6085 7.4165 39 1 1.6995 -4.6122 -0.0134 40 1 0.4638 -2.4894 -0.0017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805846454.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:31 Heat of formation + Delta-G solvation = -113.100307 kcal Electronic energy + Delta-G solvation = -21229.286942 eV Core-core repulsion = 17780.819400 eV Total energy + Delta-G solvation = -3448.467542 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.57915 -40.12906 -38.47573 -36.97071 -35.08493 -32.76699 -32.21097 -31.39288 -30.15729 -29.33180 -26.24508 -24.45754 -23.16477 -22.70653 -21.04514 -20.20714 -20.11376 -18.46037 -17.30043 -17.05773 -16.89338 -16.20935 -15.75270 -15.40585 -15.10755 -14.81422 -14.52284 -14.24218 -14.11728 -13.97886 -13.32042 -12.86995 -12.73050 -12.64903 -12.61955 -12.44379 -12.06354 -11.83967 -11.72961 -11.06205 -11.03883 -10.76200 -10.65353 -10.56615 -10.51620 -10.21290 -9.70536 -9.51935 -9.37313 -9.17552 -9.05208 -8.34356 -5.99135 -4.02027 0.05889 0.89262 1.81267 2.00895 2.58809 3.33115 3.36451 3.37776 3.39823 3.60941 4.27491 4.34340 4.45781 4.54298 4.63151 4.80100 4.83306 4.92985 5.03780 5.04419 5.14689 5.28857 5.36308 5.42190 5.49355 5.61475 5.71241 5.86623 5.89624 5.96620 6.06078 6.13572 6.36159 6.48426 6.69139 6.87173 7.08047 7.10475 7.66002 7.68313 7.82458 8.00966 8.42444 9.05214 9.61896 11.12083 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.044228 B = 0.002083 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.931593 B =13437.826006 C =13615.592373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.396 3.604 3 O -0.458 6.458 4 C -0.178 4.178 5 C -0.044 4.044 6 C -0.134 4.134 7 C 0.123 3.877 8 O -0.302 6.302 9 C 0.459 3.541 10 O -0.483 6.483 11 C -0.108 4.108 12 C -0.110 4.110 13 C -0.110 4.110 14 C 0.020 3.980 15 C -0.522 4.522 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 C -0.135 4.135 24 C -0.057 4.057 25 H 0.095 0.905 26 H 0.085 0.915 27 H 0.095 0.905 28 H 0.141 0.859 29 H 0.136 0.864 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.050 0.950 35 H 0.050 0.950 36 H 0.016 0.984 37 H 0.016 0.984 38 H 0.261 0.739 39 H 0.140 0.860 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.312 14.619 -17.140 27.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.275 3.725 3 O -0.333 6.333 4 C -0.179 4.179 5 C -0.063 4.063 6 C -0.152 4.152 7 C 0.081 3.919 8 O -0.219 6.219 9 C 0.303 3.697 10 O -0.366 6.366 11 C -0.145 4.145 12 C -0.147 4.147 13 C -0.147 4.147 14 C -0.017 4.017 15 C -0.561 4.561 16 H 0.073 0.927 17 C -0.146 4.146 18 N -0.534 5.534 19 Si 0.720 3.280 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.153 4.153 24 C -0.075 4.075 25 H 0.114 0.886 26 H 0.104 0.896 27 H 0.113 0.887 28 H 0.159 0.841 29 H 0.154 0.846 30 H 0.126 0.874 31 H 0.126 0.874 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.071 0.929 39 H 0.158 0.842 40 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.952 15.432 -16.628 27.733 hybrid contribution 0.479 -0.993 0.177 1.117 sum -15.473 14.438 -16.451 26.805 Atomic orbital electron populations 1.22259 0.93467 1.05355 1.04687 1.22435 0.91793 0.87404 0.70890 1.90560 1.72216 1.34259 1.36301 1.20600 0.94592 0.95017 1.07724 1.21290 0.93102 0.98275 0.93594 1.21351 1.01145 0.91396 1.01339 1.18914 0.90623 0.84418 0.97903 1.84629 1.63949 1.36233 1.37068 1.24779 0.75665 0.89798 0.79487 1.90729 1.54090 1.54642 1.37126 1.21678 1.01146 0.89216 1.02484 1.21619 1.01061 1.00205 0.91837 1.21655 0.98624 0.93020 1.01443 1.19093 0.96100 0.96717 0.89786 1.21223 1.36480 1.02335 0.96027 0.92719 1.25045 0.96319 0.97271 0.95934 1.69959 1.45618 1.36669 1.01165 0.86653 0.79853 0.84427 0.77019 1.20263 1.21311 1.20258 1.21165 0.92365 0.99567 1.02213 1.21286 1.00268 0.90564 0.95426 0.88620 0.89567 0.88684 0.84140 0.84612 0.87409 0.87429 0.91394 0.91419 0.93104 0.93094 0.96535 0.96535 0.92938 0.84235 0.84089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -0.91 8.92 36.01 0.32 -0.58 16 2 C 0.40 3.41 7.22 -30.80 -0.22 3.19 16 3 O -0.46 -5.55 17.07 5.55 0.09 -5.45 16 4 C -0.18 -1.60 5.87 -105.06 -0.62 -2.22 16 5 C -0.04 -0.45 9.59 -39.14 -0.38 -0.83 16 6 C -0.13 -1.47 9.54 -39.51 -0.38 -1.85 16 7 C 0.12 1.40 5.14 -38.98 -0.20 1.20 16 8 O -0.30 -3.63 10.01 -23.11 -0.23 -3.86 16 9 C 0.46 6.18 7.83 36.01 0.28 6.46 16 10 O -0.48 -8.06 15.47 -18.75 -0.29 -8.35 16 11 C -0.11 -1.31 5.81 -27.88 -0.16 -1.48 16 12 C -0.11 -1.79 4.50 -26.73 -0.12 -1.91 16 13 C -0.11 -2.13 5.15 -26.73 -0.14 -2.27 16 14 C 0.02 0.51 4.97 -27.88 -0.14 0.38 16 15 C -0.52 -14.72 9.11 -34.44 -0.31 -15.03 16 16 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 18 N -0.89 -27.10 13.29 55.43 0.74 -26.36 16 19 Si 0.89 21.60 29.54 -169.99 -5.02 16.58 16 20 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 21 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C -0.13 -1.22 9.97 -39.51 -0.39 -1.61 16 24 C -0.06 -0.42 9.46 -39.14 -0.37 -0.79 16 25 H 0.10 0.29 8.08 -51.93 -0.42 -0.13 16 26 H 0.09 0.40 8.12 -51.93 -0.42 -0.03 16 27 H 0.09 0.24 8.08 -51.93 -0.42 -0.18 16 28 H 0.14 1.34 7.64 -52.48 -0.40 0.94 16 29 H 0.14 1.39 8.06 -52.48 -0.42 0.96 16 30 H 0.11 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 33 H 0.07 1.17 8.10 -51.93 -0.42 0.75 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 39 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.14 0.53 7.04 -52.48 -0.37 0.16 16 LS Contribution 351.43 15.07 5.30 5.30 Total: -1.00 -34.22 351.43 -8.13 -42.36 By element: Atomic # 1 Polarization: 1.43 SS G_CDS: -5.80 Total: -4.37 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -2.92 Total: -15.84 kcal Atomic # 7 Polarization: -27.10 SS G_CDS: 0.74 Total: -26.36 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.43 Total: -17.66 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.22 -8.13 -42.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805846454.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.745 kcal (2) G-P(sol) polarization free energy of solvation -34.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds