Wall clock time and date at job start Tue Mar 31 2020 06:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21285 * 120.00286 * 2 1 4 4 C 1.46910 * 119.99504 * 180.02562 * 2 1 3 5 5 C 1.40014 * 120.11397 * 180.02562 * 4 2 1 6 6 C 1.37626 * 119.88243 * 180.02562 * 5 4 2 7 7 C 1.39042 * 120.11864 * 359.97438 * 6 5 4 8 8 O 1.35724 * 119.88346 * 180.02562 * 7 6 5 9 9 C 1.34308 * 117.00101 * 77.10921 * 8 7 6 10 10 O 1.20832 * 119.99958 * 355.08649 * 9 8 7 11 11 C 1.50706 * 120.00349 * 175.08788 * 9 8 7 12 12 C 1.52995 * 109.47174 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47017 * 179.97438 * 12 11 9 14 14 C 1.53004 * 109.47124 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.46961 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99974 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99756 * 180.02562 * 15 14 13 18 18 N 1.31510 * 119.99883 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99724 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.46996 * 59.99846 * 19 17 15 21 21 H 1.48501 * 109.46875 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47175 * 299.99532 * 19 17 15 23 23 C 1.39044 * 120.22927 * 0.28168 * 7 6 5 24 24 C 1.37629 * 120.11313 * 359.44132 * 23 7 6 25 25 H 1.08995 * 109.47068 * 240.00199 * 1 2 3 26 26 H 1.09000 * 109.46809 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47335 * 119.99623 * 1 2 3 28 28 H 1.08003 * 120.05742 * 359.97438 * 5 4 2 29 29 H 1.08007 * 119.93601 * 179.97438 * 6 5 4 30 30 H 1.08991 * 109.46896 * 300.00000 * 11 9 8 31 31 H 1.09001 * 109.46584 * 59.99815 * 11 9 8 32 32 H 1.08996 * 109.47450 * 300.00433 * 12 11 9 33 33 H 1.09001 * 109.47302 * 60.00517 * 12 11 9 34 34 H 1.09004 * 109.47261 * 300.00221 * 13 12 11 35 35 H 1.08999 * 109.46979 * 60.00553 * 13 12 11 36 36 H 1.09004 * 109.46918 * 300.00047 * 14 13 12 37 37 H 1.08991 * 109.47193 * 59.99897 * 14 13 12 38 38 H 0.97006 * 119.99826 * 180.02562 * 18 17 15 39 39 H 1.07996 * 119.94108 * 179.72597 * 23 7 6 40 40 H 1.08005 * 120.05523 * 180.25591 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 6 2.2415 -1.2723 -0.0006 5 6 3.6416 -1.2752 0.0000 6 6 4.3248 -2.4700 -0.0011 7 6 3.6271 -3.6727 -0.0022 8 8 4.3057 -4.8481 -0.0027 9 6 4.8413 -5.2435 1.1638 10 8 4.7848 -4.5206 2.1304 11 6 5.5130 -6.5886 1.2671 12 6 6.0339 -6.7905 2.6914 13 6 6.7152 -8.1564 2.7965 14 6 7.2356 -8.3586 4.2210 15 6 7.9071 -9.7037 4.3243 16 1 7.9574 -10.3499 3.4605 17 6 8.4565 -10.1097 5.5220 18 7 8.3949 -9.3230 6.5740 19 14 9.2884 -11.7774 5.6501 20 1 10.4240 -11.8388 4.6953 21 1 9.7935 -11.9735 7.0327 22 1 8.3092 -12.8453 5.3243 23 6 2.2367 -3.6754 -0.0081 24 6 1.5439 -2.4862 -0.0013 25 1 -0.3633 -0.5138 0.8900 26 1 -0.3633 1.0277 0.0005 27 1 -0.3634 -0.5138 -0.8900 28 1 4.1845 -0.3416 0.0004 29 1 5.4049 -2.4732 -0.0011 30 1 4.7946 -7.3726 1.0281 31 1 6.3464 -6.6333 0.5660 32 1 6.7523 -6.0063 2.9301 33 1 5.2007 -6.7456 3.3928 34 1 5.9963 -8.9403 2.5580 35 1 7.5483 -8.2018 2.0951 36 1 7.9543 -7.5747 4.4599 37 1 6.4023 -8.3133 4.9221 38 1 8.7818 -9.6085 7.4165 39 1 1.6995 -4.6122 -0.0134 40 1 0.4638 -2.4894 -0.0017 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805846454.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:30 Heat of formation + Delta-G solvation = -131.709238 kcal Electronic energy + Delta-G solvation = -21230.093886 eV Core-core repulsion = 17780.819400 eV Total energy + Delta-G solvation = -3449.274485 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 290.135 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.51589 -40.88537 -39.35511 -37.91730 -36.67463 -34.67941 -32.91822 -32.18835 -31.61706 -30.02471 -27.85177 -25.62452 -24.10154 -23.85516 -22.29739 -21.59699 -20.93383 -19.40122 -18.39752 -18.18932 -17.96636 -17.73885 -16.69972 -16.50568 -16.05407 -15.94959 -15.73203 -15.27888 -15.09584 -14.68910 -14.56658 -14.07318 -13.95666 -13.67836 -13.47955 -13.31755 -13.13843 -13.02123 -12.94983 -12.79847 -12.39818 -12.22573 -12.20124 -11.87500 -11.81226 -11.38704 -11.31607 -11.09791 -10.89815 -10.53523 -10.22714 -9.96223 -8.18185 -6.29889 -0.69142 0.18399 0.97271 1.08470 1.41430 1.44900 1.52695 1.72488 2.42557 2.63089 3.01486 3.14846 3.50169 3.62899 3.76139 3.91633 4.06407 4.07846 4.14537 4.23120 4.38512 4.55917 4.62726 4.65279 4.69262 4.76250 4.80227 4.85298 4.92900 5.09800 5.10902 5.13491 5.20886 5.30212 5.32064 5.36465 5.56716 5.67148 5.78326 5.88970 6.25848 6.45123 6.66361 6.88725 7.39697 8.93634 Molecular weight = 290.14amu Principal moments of inertia in cm(-1) A = 0.044228 B = 0.002083 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.931593 B =13437.826006 C =13615.592373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.397 3.603 3 O -0.504 6.504 4 C -0.186 4.186 5 C -0.061 4.061 6 C -0.150 4.150 7 C 0.092 3.908 8 O -0.294 6.294 9 C 0.465 3.535 10 O -0.524 6.524 11 C -0.098 4.098 12 C -0.102 4.102 13 C -0.096 4.096 14 C 0.018 3.982 15 C -0.542 4.542 16 H 0.067 0.933 17 C -0.007 4.007 18 N -0.937 5.937 19 Si 0.968 3.032 20 H -0.265 1.265 21 H -0.287 1.287 22 H -0.264 1.264 23 C -0.136 4.136 24 C -0.040 4.040 25 H 0.118 0.882 26 H 0.084 0.916 27 H 0.124 0.876 28 H 0.135 0.865 29 H 0.130 0.870 30 H 0.139 0.861 31 H 0.134 0.866 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.064 0.936 36 H -0.015 1.015 37 H -0.013 1.013 38 H 0.262 0.738 39 H 0.163 0.837 40 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.271 13.015 -19.035 29.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.278 3.722 3 O -0.383 6.383 4 C -0.187 4.187 5 C -0.079 4.079 6 C -0.168 4.168 7 C 0.051 3.949 8 O -0.210 6.210 9 C 0.311 3.689 10 O -0.410 6.410 11 C -0.134 4.134 12 C -0.139 4.139 13 C -0.134 4.134 14 C -0.019 4.019 15 C -0.580 4.580 16 H 0.085 0.915 17 C -0.204 4.204 18 N -0.578 5.578 19 Si 0.792 3.208 20 H -0.190 1.190 21 H -0.212 1.212 22 H -0.189 1.189 23 C -0.154 4.154 24 C -0.058 4.058 25 H 0.137 0.863 26 H 0.103 0.897 27 H 0.142 0.858 28 H 0.153 0.847 29 H 0.148 0.852 30 H 0.157 0.843 31 H 0.152 0.848 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.004 0.996 37 H 0.005 0.995 38 H 0.071 0.929 39 H 0.181 0.819 40 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -17.927 13.813 -18.565 29.272 hybrid contribution 1.041 -0.422 0.761 1.357 sum -16.886 13.391 -17.804 27.954 Atomic orbital electron populations 1.22319 0.89635 1.06199 1.06999 1.23081 0.93763 0.86316 0.69021 1.90553 1.73476 1.35581 1.38679 1.20901 0.94163 0.96373 1.07256 1.21377 0.94284 0.97834 0.94452 1.21392 1.01168 0.91955 1.02295 1.19270 0.91871 0.83993 0.99775 1.84611 1.63794 1.36527 1.36020 1.24933 0.74969 0.89723 0.79302 1.90722 1.55784 1.55897 1.38611 1.21568 1.02696 0.89420 0.99763 1.21381 0.99934 0.97885 0.94740 1.21440 0.99502 0.95150 0.97257 1.19060 0.94361 0.95155 0.93362 1.21734 1.36351 1.03324 0.96542 0.91481 1.26078 0.97106 1.01678 0.95579 1.70119 1.46830 1.38987 1.01834 0.85457 0.79013 0.79196 0.77112 1.19022 1.21230 1.18879 1.21529 0.91367 1.01301 1.01183 1.21742 1.02303 0.88914 0.92809 0.86346 0.89693 0.85792 0.84707 0.85181 0.84343 0.84808 0.93210 0.92927 0.91528 0.91756 0.99633 0.99462 0.92900 0.81903 0.79559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.12 8.92 71.24 0.64 -0.48 16 2 C 0.40 6.34 7.22 27.96 0.20 6.54 16 3 O -0.50 -12.44 17.07 -3.05 -0.05 -12.49 16 4 C -0.19 -3.13 5.87 -20.15 -0.12 -3.24 16 5 C -0.06 -1.29 9.59 22.56 0.22 -1.08 16 6 C -0.15 -3.41 9.54 22.32 0.21 -3.19 16 7 C 0.09 2.04 5.14 22.66 0.12 2.15 16 8 O -0.29 -6.71 10.01 6.35 0.06 -6.64 16 9 C 0.46 12.14 7.83 71.24 0.56 12.70 16 10 O -0.52 -17.80 15.47 21.94 0.34 -17.46 16 11 C -0.10 -2.17 5.81 29.85 0.17 -2.00 16 12 C -0.10 -3.31 4.50 30.59 0.14 -3.17 16 13 C -0.10 -3.65 5.15 30.60 0.16 -3.49 16 14 C 0.02 0.94 4.97 29.85 0.15 1.09 16 15 C -0.54 -30.62 9.11 25.60 0.23 -30.39 16 16 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 17 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 18 N -0.94 -58.14 13.29 21.45 0.28 -57.85 16 19 Si 0.97 44.13 29.54 68.60 2.03 46.16 16 20 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 21 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 22 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 23 C -0.14 -2.12 9.97 22.32 0.22 -1.90 16 24 C -0.04 -0.46 9.46 22.55 0.21 -0.25 16 25 H 0.12 0.21 8.08 -2.39 -0.02 0.19 16 26 H 0.08 0.57 8.12 -2.39 -0.02 0.55 16 27 H 0.12 0.05 8.08 -2.39 -0.02 0.03 16 28 H 0.14 2.86 7.64 -2.91 -0.02 2.83 16 29 H 0.13 2.91 8.06 -2.91 -0.02 2.89 16 30 H 0.14 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.05 1.78 8.10 -2.39 -0.02 1.76 16 33 H 0.05 1.85 8.10 -2.39 -0.02 1.83 16 34 H 0.07 2.33 8.14 -2.38 -0.02 2.31 16 35 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 36 H -0.01 -0.86 8.14 -2.38 -0.02 -0.88 16 37 H -0.01 -0.75 8.14 -2.39 -0.02 -0.77 16 38 H 0.26 15.32 8.31 -92.70 -0.77 14.55 16 39 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 40 H 0.19 0.39 7.04 -2.91 -0.02 0.37 16 Total: -1.00 -78.22 351.43 7.26 -70.96 By element: Atomic # 1 Polarization: 2.98 SS G_CDS: 1.02 Total: 4.00 kcal Atomic # 6 Polarization: -30.25 SS G_CDS: 3.57 Total: -26.68 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: 0.28 Total: -57.85 kcal Atomic # 8 Polarization: -36.95 SS G_CDS: 0.35 Total: -36.59 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.16 kcal Total: -78.22 7.26 -70.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805846454.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.747 kcal (2) G-P(sol) polarization free energy of solvation -78.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds